Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

12848232 .. 12849778

Gene Structure 1547 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGACAGGAGGGAAGTTGAACACCCAGCTGAACAAAAACTCCGCACCCAACAATTCTTCCCTCTCTCTCTCTTACATTAAAAAAAGGGAAATCTTAAAGTCAAGTGCGTGCTTCTCTGACTTGAAGAAACGTTTTCTTCTTCACCCGATACATATAAAATCCACAAGCAGCACAAAAGGAGACGTTTCGATTCTTCAACCCATTCCTTCCTCTCTGCTCCAACTCTTCCTTCAATCACAAACCCAGAATCTCTCTCTCTCTCTCTCCAAGTTTGCTGCAATGTCAGAGAAGAGGGAAGAGAGAGAGATGAACGTGTACCTGGACGGGATGATAGAGTCCATGCCTGTGTTCGCAAAGGAGCTGATCGCCGGTGGCGTCGCCGGCGGGGTTGCAAAAACAGTGGTTGCGCCACTCGAGCGCATCAAGATTTTGTTTCAGACCAGAAGAGCAGAATACCAGAGCATCGGGCTTTTTGGATCCGTTAAGAAAATTGCAAGGACAGAAGGGCCCATGGTTCTCGTACAGGGGAAATGGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006732 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009058 GO:0009108 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015228 GO:0015291 GO:0015297 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015880 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035349 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051186 GO:0051188 GO:0051234 GO:0051503 GO:0055085 GO:0071077 GO:0071106 GO:0071702 GO:0071705 GO:0072530 GO:0098656 GO:1901264 GO:1901505 GO:1901679 GO:1990542 GO:1990559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

180

Amino Acids

19.7

Weight (kDa)

10.0

Isoelectric Point (pI)

56.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	117 - 176	2.6e-12	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	42, 384
AclI	AACGTT	1 cut(s)	130
AclWI	GGATC	2 cut(s)	471, 484
AcyI	GRCGYC	1 cut(s)	375
AfaI	GTAC	2 cut(s)	317, 522
AflIII	ACRYGT	1 cut(s)	312
AgsI	TTSAA	4 cut(s)	19, 124, 197, 233
AjnI	CCWGG	1 cut(s)	318
AjuI	GAANNNNNNNTTGG	2 cut(s)	213, 245
AloI	GAACNNNNNNTCC	2 cut(s)	23, 55
AluBI	AGCT	3 cut(s)	28, 361, 537
AluI	AGCT	3 cut(s)	28, 361, 537
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	2 cut(s)	471, 484
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	1 cut(s)	506
ApaI	GGGCCC	1 cut(s)	510
ApeKI	GCWGC	2 cut(s)	168, 275
AspLEI	GCGC	2 cut(s)	409, 420
AspS9I	GGNCC	2 cut(s)	506, 507
AsuHPI	GGTGA	1 cut(s)	134
AvaI	CYCGRG	1 cut(s)	413
BaeGI	GKGCMC	1 cut(s)	510
BamHI	GGATCC	1 cut(s)	476
BanII	GRGCYC	1 cut(s)	510
BbvI	GCAGC	2 cut(s)	180, 262
BciT130I	CCWGG	1 cut(s)	320
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	1 cut(s)	538
BisI	GCNGC	2 cut(s)	169, 276
BlsI	GCNGC	2 cut(s)	170, 277
Bme1390I	CCNGG	1 cut(s)	320
BmeT110I	CYCGRG	1 cut(s)	413
BmgT120I	GGNCC	2 cut(s)	506, 507
BmiI	GGNNCC	2 cut(s)	478, 508
BmrFI	CCNGG	1 cut(s)	320
BmsI	GCATC	2 cut(s)	429, 471
BsaHI	GRCGYC	1 cut(s)	375
BsaJI	CCNNGG	1 cut(s)	510
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bse118I	RCCGGY	2 cut(s)	368, 380
Bse3DI	GCAATG	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	320
BseDI	CCNNGG	1 cut(s)	510
BseGI	GGATG	1 cut(s)	333
BseMI	GCAATG	1 cut(s)	285
BseSI	GKGCMC	1 cut(s)	510
BseXI	GCAGC	2 cut(s)	180, 262
BseYI	CCCAGC	1 cut(s)	24
BshFI	GGCC	1 cut(s)	508
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	2 cut(s)	369, 381
BsmAI	GTCTC	1 cut(s)	174
BsmBI	CGTCTC	1 cut(s)	174
BsnI	GGCC	1 cut(s)	508
BsoBI	CYCGRG	1 cut(s)	413
Bsp120I	GGGCCC	1 cut(s)	506
Bsp1286I	GDGCHC	1 cut(s)	510
Bsp143I	GATC	2 cut(s)	363, 476
Bsp19I	CCATGG	1 cut(s)	510
BspACI	CCGC	2 cut(s)	42, 384
BspANI	GGCC	1 cut(s)	508
BspLI	GGNNCC	2 cut(s)	478, 508
BspPI	GGATC	2 cut(s)	471, 484
BspQI	GCTCTTC	1 cut(s)	439
BsrDI	GCAATG	1 cut(s)	285
BsrFI	RCCGGY	2 cut(s)	368, 380
BssAI	RCCGGY	2 cut(s)	368, 380
BssECI	CCNNGG	1 cut(s)	510
BssMI	GATC	2 cut(s)	363, 476
BssNI	GRCGYC	1 cut(s)	375
BssT1I	CCWWGG	1 cut(s)	510
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	1 cut(s)	400
Bst6I	CTCTTC	4 cut(s)	230, 284, 291, 439
BstACI	GRCGYC	1 cut(s)	375
BstC8I	GCNNGC	2 cut(s)	109, 382
BstDSI	CCRYGG	1 cut(s)	510
BstF5I	GGATG	1 cut(s)	333
BstHHI	GCGC	2 cut(s)	409, 420
BstKTI	GATC	2 cut(s)	366, 479
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	2 cut(s)	363, 476
BstMWI	GCNNNNNNNGC	2 cut(s)	381, 415
BstNI	CCWGG	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	318
BstSLI	GKGCMC	1 cut(s)	510
BstV1I	GCAGC	2 cut(s)	180, 262
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
BsuRI	GGCC	1 cut(s)	508
BtgI	CCRYGG	1 cut(s)	510
BtsCI	GGATG	1 cut(s)	333
BtsIMutI	CAGTG	1 cut(s)	405
Cac8I	GCNNGC	2 cut(s)	109, 382
CfoI	GCGC	2 cut(s)	409, 420
Cfr10I	RCCGGY	2 cut(s)	368, 380
Cfr13I	GGNCC	2 cut(s)	506, 507
CseI	GACGC	1 cut(s)	364
Csp6I	GTAC	2 cut(s)	316, 521
CspCI	CAANNNNNGTGG	2 cut(s)	381, 416
CviAII	CATG	2 cut(s)	340, 511
CviJI	RGCY	5 cut(s)	28, 361, 469, 508, 537
CviKI_1	RGCY	5 cut(s)	28, 361, 469, 508, 537
CviQI	GTAC	2 cut(s)	316, 521
DpnI	GATC	2 cut(s)	365, 478
DpnII	GATC	2 cut(s)	363, 476
Eam1104I	CTCTTC	4 cut(s)	230, 284, 291, 439
EarI	CTCTTC	4 cut(s)	230, 284, 291, 439
Eco130I	CCWWGG	1 cut(s)	510
Eco24I	GRGCYC	1 cut(s)	510
Eco88I	CYCGRG	1 cut(s)	413
EcoO109I	RGGNCCY	1 cut(s)	506
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	510
EcoT38I	GRGCYC	1 cut(s)	510
ErhI	CCWWGG	1 cut(s)	510
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	2 cut(s)	343, 514
FaiI	YATR	4 cut(s)	153, 155, 341, 512
FatI	CATG	2 cut(s)	339, 510
FauI	CCCGC	1 cut(s)	377
Fnu4HI	GCNGC	2 cut(s)	169, 276
FokI	GGATG	1 cut(s)	340
FriOI	GRGCYC	1 cut(s)	510
Fsp4HI	GCNGC	2 cut(s)	169, 276
FspBI	CTAG	1 cut(s)	538
GlaI	GCGC	2 cut(s)	408, 419
GluI	GCNGC	2 cut(s)	169, 276
GsaI	CCCAGC	1 cut(s)	28
HaeIII	GGCC	1 cut(s)	508
HapII	CCGG	2 cut(s)	369, 381
HgaI	GACGC	1 cut(s)	364
HhaI	GCGC	2 cut(s)	409, 420
Hin1I	GRCGYC	1 cut(s)	375
Hin1II	CATG	2 cut(s)	343, 514
Hin6I	GCGC	2 cut(s)	407, 418
HinP1I	GCGC	2 cut(s)	407, 418
HinfI	GANTC	3 cut(s)	190, 247, 335
HpaII	CCGG	2 cut(s)	369, 381
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	3 cut(s)	118, 286, 438
Hpy188III	TCNNGA	1 cut(s)	424
Hpy8I	GTNNAC	1 cut(s)	316
Hpy99I	CGWCG	1 cut(s)	380
HpyAV	CCTTC	3 cut(s)	216, 239, 497
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	3 cut(s)	130, 183, 312
HpyCH4V	TGCA	3 cut(s)	278, 392, 494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	381, 415
HpySE526I	ACGT	3 cut(s)	130, 183, 312
Hsp92I	GRCGYC	1 cut(s)	375
Hsp92II	CATG	2 cut(s)	343, 514
HspAI	GCGC	2 cut(s)	407, 418
KroI	GCCGGC	1 cut(s)	380
KroNI	GCCGGC	1 cut(s)	382
Kzo9I	GATC	2 cut(s)	363, 476
LguI	GCTCTTC	1 cut(s)	439
LmnI	GCTCC	3 cut(s)	222, 358, 534
Lsp1109I	GCAGC	2 cut(s)	180, 262
LweI	GCATC	2 cut(s)	429, 471
MaeI	CTAG	1 cut(s)	538
MaeII	ACGT	3 cut(s)	130, 183, 312
MalI	GATC	2 cut(s)	365, 478
MboI	GATC	2 cut(s)	363, 476
MboII	GAAGA	9 cut(s)	48, 128, 131, 136, 185, 217, 301, 308, 456
MflI	RGATCY	1 cut(s)	476
MhlI	GDGCHC	1 cut(s)	510
MluCI	AATT	2 cut(s)	52, 489
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	3 cut(s)	71, 220, 285
MreI	CGCCGGCG	1 cut(s)	380
MroNI	GCCGGC	1 cut(s)	380
MseI	TTAA	3 cut(s)	78, 95, 483
MslI	CAYNNNNRTG	1 cut(s)	344
MspA1I	CMGCKG	1 cut(s)	28
MspI	CCGG	2 cut(s)	369, 381
MspR9I	CCNGG	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	2 cut(s)	381, 415
NaeI	GCCGGC	1 cut(s)	382
NcoI	CCATGG	1 cut(s)	510
NdeII	GATC	2 cut(s)	363, 476
NgoMIV	GCCGGC	1 cut(s)	380
NlaIII	CATG	2 cut(s)	343, 514
NlaIV	GGNNCC	2 cut(s)	478, 508
PaeR7I	CTCGAG	1 cut(s)	413
PciSI	GCTCTTC	1 cut(s)	439
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PdiI	GCCGGC	1 cut(s)	382
PfeI	GAWTC	2 cut(s)	190, 247
PkrI	GCNGC	2 cut(s)	170, 277
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
Psp1406I	AACGTT	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	318
PspFI	CCCAGC	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	2 cut(s)	478, 508
PspOMI	GGGCCC	1 cut(s)	506
PspPI	GGNCC	2 cut(s)	506, 507
PspXI	VCTCGAGB	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	476
PvuII	CAGCTG	1 cut(s)	28
RsaI	GTAC	2 cut(s)	317, 522
RsaNI	GTAC	2 cut(s)	316, 521
RseI	CAYNNNNRTG	1 cut(s)	344
SapI	GCTCTTC	1 cut(s)	439
SaqAI	TTAA	3 cut(s)	78, 95, 483
SatI	GCNGC	2 cut(s)	169, 276
Sau3AI	GATC	2 cut(s)	363, 476
Sau96I	GGNCC	2 cut(s)	506, 507
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	1 cut(s)	320
SduI	GDGCHC	1 cut(s)	510
SetI	ASST	7 cut(s)	30, 133, 186, 315, 321, 363, 539
SfaNI	GCATC	2 cut(s)	429, 471
Sfr274I	CTCGAG	1 cut(s)	413
SgrAI	CRCCGGYG	2 cut(s)	368, 380
SlaI	CTCGAG	1 cut(s)	413
SmiMI	CAYNNNNRTG	1 cut(s)	344
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	2 cut(s)	52, 489
SsiI	CCGC	2 cut(s)	42, 384
SspMI	CTAG	1 cut(s)	538
StyD4I	CCNGG	1 cut(s)	318
StyI	CCWWGG	1 cut(s)	510
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	3 cut(s)	133, 186, 315
TaqI	TCGA	2 cut(s)	188, 414
TasI	AATT	2 cut(s)	52, 489
TfiI	GAWTC	2 cut(s)	190, 247
Tru1I	TTAA	3 cut(s)	78, 95, 483
Tru9I	TTAA	3 cut(s)	78, 95, 483
TscAI	CASTG	1 cut(s)	405
TseI	GCWGC	2 cut(s)	168, 275
TspDTI	ATGAA	1 cut(s)	323
TspGWI	ACGGA	1 cut(s)	469
TspRI	CASTG	1 cut(s)	405
XhoI	CTCGAG	1 cut(s)	413
XspI	CTAG	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.