Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

12853952 .. 12855104

Gene Structure 1153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGCCCGCCGGCGACCTCAGGTGCACGGAGGCCTGGGTGTGGACCCAAATCAAAGCCGAGGCGCGTCGCGACACCGAATTGGAGCCGGCTCTGGCCAGCTACTCTACTCGACGATACTCTCGCACTCGTCGCTGGAGTGATCGCTGTCGTTTCACCTGGGAAACAAGCTCTGCTCCTCCACCCTCCTCTCCACGCTCCTCTACGACCCCTTCCTCTACACCTTCTCCTCAGACCCCTCCCTACGCGCTGCCACCATCGCCGATCTCTGCGCCGCCCACGAACGCGACCCCGCCTGCATCTCGTTTTCTCACTGCCTGCTCAATTACAAAGGCTTCTTGGCCTGTCAGCGTGAATCGAGCGCACAAGCTGTGGATCCAGAACCGCAGGCCGCTGGCGCTTGCGCTGCACTCGCGGATCGCGGATGTGTTCGCGGTGGACATTCACCCGGCGGTGAGGATCGAAAAGGGGATGCTGTTCGACCATGCGACAGGGGTGGTGGTGGGGGAGACGGCGGTGATCGGAACCAACGTGTCGATACTCCACCACGTGACGTTGGGAGGGACTGGGAATGCCGGCGGAGATAGGCACCCGAAAATTGGGGATGGAGTTTTGATTGGCGCGAGCGCGACGATTTTGGGAAATGTGAAGATTGGGGAGGGCGCGAAGATCGGGGCGAGGTCGGTGGTGCTGATTGATGTGCCGGCGAGGACGACGGAGGTGGGAAATCCGGCGAGGTTGGTTGGCGGGAAGGAAAGGCCGTCGAAGCACGAGGATGTGCCTGGGCAGTCCAAGGCTCACACCTCCTTTATCTCCGAGTGGTCCGACTATATCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

279

Amino Acids

29.84

Weight (kDa)

9.78

Isoelectric Point (pI)

56.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hexapep	PF00132	196 - 229	1.8e-10	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	585
AclWI	GGATC	4 cut(s)	367, 380, 422, 464
AcoI	YGGCCR	1 cut(s)	93
AcvI	CACGTG	1 cut(s)	547
AdeI	CACNNNGTG	1 cut(s)	547
AfiI	CCNNNNNNNGG	2 cut(s)	39, 596
AflIII	ACRYGT	1 cut(s)	528
AjnI	CCWGG	3 cut(s)	32, 155, 778
AluBI	AGCT	3 cut(s)	99, 168, 367
AluI	AGCT	3 cut(s)	99, 168, 367
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	1 cut(s)	500
Alw44I	GTGCAC	1 cut(s)	22
AlwI	GGATC	4 cut(s)	367, 380, 422, 464
AoxI	GGCC	5 cut(s)	30, 93, 338, 386, 755
ApaLI	GTGCAC	1 cut(s)	22
ApeKI	GCWGC	2 cut(s)	247, 403
AspLEI	GCGC	9 cut(s)	64, 247, 271, 361, 397, 403, 620, 626, 662
AspS9I	GGNCC	2 cut(s)	42, 819
AsuC2I	CCSGG	1 cut(s)	446
AsuHPI	GGTGA	4 cut(s)	145, 434, 463, 526
AvaII	GGWCC	2 cut(s)	42, 819
AxyI	CCTNAGG	1 cut(s)	17
BaeGI	GKGCMC	1 cut(s)	26
BalI	TGGCCA	1 cut(s)	95
BamHI	GGATCC	1 cut(s)	372
BanI	GGYRCC	1 cut(s)	585
BauI	CACGAG	1 cut(s)	767
BbrPI	CACGTG	1 cut(s)	547
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	2 cut(s)	234, 390
BccI	CCATC	2 cut(s)	262, 596
BceAI	ACGGC	2 cut(s)	525, 742
BciT130I	CCWGG	3 cut(s)	34, 157, 780
BcnI	CCSGG	1 cut(s)	446
BcoDI	GTCTC	1 cut(s)	500
BfoI	RGCGCY	1 cut(s)	398
BisI	GCNGC	4 cut(s)	248, 272, 389, 404
BlsI	GCNGC	4 cut(s)	249, 273, 390, 405
Bme1390I	CCNGG	4 cut(s)	34, 157, 446, 780
Bme18I	GGWCC	2 cut(s)	42, 819
BmgT120I	GGNCC	2 cut(s)	42, 819
BmiI	GGNNCC	5 cut(s)	44, 84, 374, 523, 587
BmrFI	CCNGG	4 cut(s)	34, 157, 446, 780
BmrI	ACTGGG	1 cut(s)	573
BmsI	GCATC	2 cut(s)	305, 459
BmuI	ACTGGG	1 cut(s)	573
BpmI	CTGGAG	1 cut(s)	154
BpuMI	CCSGG	1 cut(s)	446
BsaAI	YACGTR	1 cut(s)	547
BsaJI	CCNNGG	5 cut(s)	33, 57, 156, 779, 789
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 596
Bse118I	RCCGGY	4 cut(s)	8, 85, 572, 700
Bse1I	ACTGG	1 cut(s)	568
Bse21I	CCTNAGG	1 cut(s)	17
BseBI	CCWGG	3 cut(s)	34, 157, 780
BseDI	CCNNGG	5 cut(s)	33, 57, 156, 779, 789
BseGI	GGATG	4 cut(s)	427, 474, 607, 778
BseLI	CCNNNNNNNGG	2 cut(s)	39, 596
BseMII	CTCAG	2 cut(s)	31, 242
BseNI	ACTGG	1 cut(s)	568
BseRI	GAGGAG	4 cut(s)	165, 175, 187, 216
BseSI	GKGCMC	1 cut(s)	26
BseXI	GCAGC	2 cut(s)	234, 390
BsgI	GTGCAG	1 cut(s)	389
BshFI	GGCC	5 cut(s)	32, 95, 340, 388, 757
BshNI	GGYRCC	1 cut(s)	585
BsiHKAI	GWGCWC	1 cut(s)	26
BsiSI	CCGG	6 cut(s)	9, 86, 446, 573, 701, 728
BslFI	GGGAC	1 cut(s)	574
BslI	CCNNNNNNNGG	2 cut(s)	39, 596
BsmAI	GTCTC	1 cut(s)	500
BsmBI	CGTCTC	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	574
BsmI	GAATGC	1 cut(s)	574
BsnI	GGCC	5 cut(s)	32, 95, 340, 388, 757
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	7 cut(s)	139, 261, 372, 414, 456, 516, 666
Bsp68I	TCGCGA	1 cut(s)	69
BspANI	GGCC	5 cut(s)	32, 95, 340, 388, 757
BspCNI	CTCAG	2 cut(s)	30, 241
BspLI	GGNNCC	5 cut(s)	44, 84, 374, 523, 587
BspPI	GGATC	4 cut(s)	367, 380, 422, 464
BspT107I	GGYRCC	1 cut(s)	585
BsrFI	RCCGGY	4 cut(s)	8, 85, 572, 700
BsrI	ACTGG	1 cut(s)	568
BssAI	RCCGGY	4 cut(s)	8, 85, 572, 700
BssECI	CCNNGG	5 cut(s)	33, 57, 156, 779, 789
BssMI	GATC	7 cut(s)	139, 261, 372, 414, 456, 516, 666
BssSI	CACGAG	1 cut(s)	767
BssT1I	CCWWGG	1 cut(s)	789
Bst2BI	CACGAG	1 cut(s)	767
Bst2UI	CCWGG	3 cut(s)	34, 157, 780
BstBAI	YACGTR	1 cut(s)	547
BstDEI	CTNAG	2 cut(s)	17, 228
BstF5I	GGATG	4 cut(s)	427, 474, 607, 778
BstH2I	RGCGCY	1 cut(s)	398
BstHHI	GCGC	9 cut(s)	64, 247, 271, 361, 397, 403, 620, 626, 662
BstKTI	GATC	7 cut(s)	142, 264, 375, 417, 459, 519, 669
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	7 cut(s)	139, 261, 372, 414, 456, 516, 666
BstMWI	GCNNNNNNNGC	6 cut(s)	129, 256, 394, 403, 409, 763
BstNI	CCWGG	3 cut(s)	34, 157, 780
BstSCI	CCNGG	4 cut(s)	32, 155, 444, 778
BstSLI	GKGCMC	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	234, 390
BstX2I	RGATCY	1 cut(s)	372
BstYI	RGATCY	1 cut(s)	372
Bsu36I	CCTNAGG	1 cut(s)	17
BsuRI	GGCC	5 cut(s)	32, 95, 340, 388, 757
BtgZI	GCGATG	1 cut(s)	240
BtsCI	GGATG	4 cut(s)	427, 474, 607, 778
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	309
BtuMI	TCGCGA	1 cut(s)	69
CfoI	GCGC	9 cut(s)	64, 247, 271, 361, 397, 403, 620, 626, 662
Cfr10I	RCCGGY	4 cut(s)	8, 85, 572, 700
Cfr13I	GGNCC	2 cut(s)	42, 819
CseI	GACGC	1 cut(s)	53
CviAII	CATG	1 cut(s)	482
DdeI	CTNAG	2 cut(s)	17, 228
DpnI	GATC	7 cut(s)	141, 263, 374, 416, 458, 518, 668
DpnII	GATC	7 cut(s)	139, 261, 372, 414, 456, 516, 666
DraIII	CACNNNGTG	1 cut(s)	547
EaeI	YGGCCR	1 cut(s)	93
EciI	GGCGGA	1 cut(s)	591
Eco130I	CCWWGG	1 cut(s)	789
Eco147I	AGGCCT	1 cut(s)	32
Eco47I	GGWCC	2 cut(s)	42, 819
Eco72I	CACGTG	1 cut(s)	547
Eco81I	CCTNAGG	1 cut(s)	17
EcoRII	CCWGG	3 cut(s)	32, 155, 778
EcoT14I	CCWWGG	1 cut(s)	789
ErhI	CCWWGG	1 cut(s)	789
Esp3I	CGTCTC	1 cut(s)	500
FaeI	CATG	1 cut(s)	485
FaiI	YATR	4 cut(s)	483, 828, 833, 835
FaqI	GGGAC	1 cut(s)	574
FatI	CATG	1 cut(s)	481
FauI	CCCGC	3 cut(s)	13, 297, 737
Fnu4HI	GCNGC	4 cut(s)	248, 272, 389, 404
FokI	GGATG	4 cut(s)	434, 481, 614, 785
Fsp4HI	GCNGC	4 cut(s)	248, 272, 389, 404
GlaI	GCGC	9 cut(s)	63, 246, 270, 360, 396, 402, 619, 625, 661
GluI	GCNGC	4 cut(s)	248, 272, 389, 404
GsuI	CTGGAG	1 cut(s)	154
HaeII	RGCGCY	1 cut(s)	398
HaeIII	GGCC	5 cut(s)	32, 95, 340, 388, 757
HapII	CCGG	6 cut(s)	9, 86, 446, 573, 701, 728
HgaI	GACGC	1 cut(s)	53
HhaI	GCGC	9 cut(s)	64, 247, 271, 361, 397, 403, 620, 626, 662
Hin1II	CATG	1 cut(s)	485
Hin6I	GCGC	9 cut(s)	62, 245, 269, 359, 395, 401, 618, 624, 660
HinP1I	GCGC	9 cut(s)	62, 245, 269, 359, 395, 401, 618, 624, 660
HinfI	GANTC	1 cut(s)	352
HpaII	CCGG	6 cut(s)	9, 86, 446, 573, 701, 728
HphI	GGTGA	4 cut(s)	145, 434, 463, 526
Hpy166II	GTNNAC	3 cut(s)	24, 42, 436
Hpy188I	TCNGA	4 cut(s)	231, 521, 814, 823
Hpy188III	TCNNGA	2 cut(s)	68, 376
Hpy8I	GTNNAC	3 cut(s)	24, 42, 436
Hpy99I	CGWCG	6 cut(s)	69, 114, 132, 631, 715, 763
HpyAV	CCTTC	3 cut(s)	219, 231, 742
HpyCH4IV	ACGT	3 cut(s)	528, 546, 551
HpyCH4V	TGCA	3 cut(s)	24, 296, 406
HpyF10VI	GCNNNNNNNGC	6 cut(s)	129, 256, 394, 403, 409, 763
HpyF3I	CTNAG	2 cut(s)	17, 228
HpySE526I	ACGT	3 cut(s)	528, 546, 551
Hsp92II	CATG	1 cut(s)	485
HspAI	GCGC	9 cut(s)	62, 245, 269, 359, 395, 401, 618, 624, 660
KroI	GCCGGC	4 cut(s)	8, 85, 572, 700
KroNI	GCCGGC	4 cut(s)	10, 87, 574, 702
Kzo9I	GATC	7 cut(s)	139, 261, 372, 414, 456, 516, 666
LmnI	GCTCC	3 cut(s)	82, 178, 200
Lsp1109I	GCAGC	2 cut(s)	234, 390
LweI	GCATC	2 cut(s)	305, 459
MaeII	ACGT	3 cut(s)	528, 546, 551
MaeIII	GTNAC	1 cut(s)	547
MalI	GATC	7 cut(s)	141, 263, 374, 416, 458, 518, 668
MboI	GATC	7 cut(s)	139, 261, 372, 414, 456, 516, 666
MboII	GAAGA	2 cut(s)	658, 676
MflI	RGATCY	1 cut(s)	372
MhlI	GDGCHC	1 cut(s)	26
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	3 cut(s)	77, 321, 594
MluNI	TGGCCA	1 cut(s)	95
Mox20I	TGGCCA	1 cut(s)	95
MreI	CGCCGGCG	1 cut(s)	8
MroNI	GCCGGC	4 cut(s)	8, 85, 572, 700
MscI	TGGCCA	1 cut(s)	95
MslI	CAYNNNNRTG	1 cut(s)	771
Msp20I	TGGCCA	1 cut(s)	95
MspA1I	CMGCKG	1 cut(s)	391
MspI	CCGG	6 cut(s)	9, 86, 446, 573, 701, 728
MspR9I	CCNGG	4 cut(s)	34, 157, 446, 780
Mva1269I	GAATGC	1 cut(s)	574
MvaI	CCWGG	3 cut(s)	34, 157, 780
MwoI	GCNNNNNNNGC	6 cut(s)	129, 256, 394, 403, 409, 763
NaeI	GCCGGC	4 cut(s)	10, 87, 574, 702
NciI	CCSGG	1 cut(s)	446
NdeII	GATC	7 cut(s)	139, 261, 372, 414, 456, 516, 666
NgoMIV	GCCGGC	4 cut(s)	8, 85, 572, 700
NlaIII	CATG	1 cut(s)	485
NlaIV	GGNNCC	5 cut(s)	44, 84, 374, 523, 587
NmeAIII	GCCGAG	1 cut(s)	82
NmuCI	GTSAC	1 cut(s)	547
NruI	TCGCGA	1 cut(s)	69
PceI	AGGCCT	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	1 cut(s)	525
PctI	GAATGC	1 cut(s)	574
PdiI	GCCGGC	4 cut(s)	10, 87, 574, 702
PfeI	GAWTC	1 cut(s)	352
PkrI	GCNGC	4 cut(s)	249, 273, 390, 405
PmaCI	CACGTG	1 cut(s)	547
PmlI	CACGTG	1 cut(s)	547
Ppu21I	YACGTR	1 cut(s)	547
Psp6I	CCWGG	3 cut(s)	32, 155, 778
PspCI	CACGTG	1 cut(s)	547
PspGI	CCWGG	3 cut(s)	32, 155, 778
PspN4I	GGNNCC	5 cut(s)	44, 84, 374, 523, 587
PspPI	GGNCC	2 cut(s)	42, 819
PsuI	RGATCY	1 cut(s)	372
RruI	TCGCGA	1 cut(s)	69
RseI	CAYNNNNRTG	1 cut(s)	771
SatI	GCNGC	4 cut(s)	248, 272, 389, 404
Sau3AI	GATC	7 cut(s)	139, 261, 372, 414, 456, 516, 666
Sau96I	GGNCC	2 cut(s)	42, 819
ScrFI	CCNGG	4 cut(s)	34, 157, 446, 780
SduI	GDGCHC	1 cut(s)	26
SfaNI	GCATC	2 cut(s)	305, 459
SgrAI	CRCCGGYG	1 cut(s)	8
SinI	GGWCC	2 cut(s)	42, 819
SmiMI	CAYNNNNRTG	1 cut(s)	771
Sse9I	AATT	3 cut(s)	77, 321, 594
SseBI	AGGCCT	1 cut(s)	32
StuI	AGGCCT	1 cut(s)	32
StyD4I	CCNGG	4 cut(s)	32, 155, 444, 778
StyI	CCWWGG	1 cut(s)	789
TaiI	ACGT	3 cut(s)	531, 549, 554
TaqI	TCGA	6 cut(s)	109, 355, 459, 477, 533, 761
TasI	AATT	3 cut(s)	77, 321, 594
TauI	GCSGC	2 cut(s)	274, 391
TfiI	GAWTC	1 cut(s)	352
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	2 cut(s)	247, 403
Tsp45I	GTSAC	1 cut(s)	547
TspGWI	ACGGA	2 cut(s)	41, 728
TspRI	CASTG	1 cut(s)	316
VneI	GTGCAC	1 cut(s)	22
VpaK11BI	GGWCC	2 cut(s)	42, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.