pycom15g18770

Lycopene epsilon cyclase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
13308362 .. 13308766
405 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 405 bp
ATGAGCACTGTAACTTCCACACACCCTGACCCACCCGCGCCGAATGAAGCAGCAAATAAAACCCATCAACCATTAATCAACTCCCCCTTCCTTGTCTCCAAGCGGTCCGTGCCTCAGCGTGGTGATGAAGGTTTTGCGGACAAGGAGGATTTCATGAAGGGCGGTGGGCCGGAGCTGCTTTTAGTTCAAATGCAGCAGAACAAGGCCATGGAGAAGCAATCCAAGCTCGCTGACAAGGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGGTTGGCTCTGGTTTTTTATTGTATTTGTATTTAGTGAAATATGGGCGAATGGTTACAAAAATTTTAACGGAAAATAAAAACGCTAAACATACTAAAAGACACTAA

Protein Analysis

135

Amino Acids

14.7

Weight (kDa)

9.66

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 38
AciI CCGC 4 cut(s) 36, 103, 137, 162
AcsI RAATTY 1 cut(s) 360
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 1 cut(s) 188
AluBI AGCT 2 cut(s) 175, 226
AluI AGCT 2 cut(s) 175, 226
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 100
AoxI GGCC 2 cut(s) 167, 204
ApeKI GCWGC 3 cut(s) 50, 175, 193
ApoI RAATTY 1 cut(s) 360
AseI ATTAAT 1 cut(s) 74
AspLEI GCGC 1 cut(s) 40
AspS9I GGNCC 2 cut(s) 105, 167
AsuHPI GGTGA 1 cut(s) 134
AvaII GGWCC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 8
BbvCI CCTCAGC 1 cut(s) 114
BbvI GCAGC 3 cut(s) 62, 162, 205
BccI CCATC 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 100
BisI GCNGC 3 cut(s) 51, 176, 194
BlsI GCNGC 3 cut(s) 52, 177, 195
Bme18I GGWCC 1 cut(s) 105
BmgT120I GGNCC 2 cut(s) 105, 167
Bpu10I CCTNAGC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 207
Bsc4I CCNNNNNNNGG 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMII CTCAG 1 cut(s) 128
BseXI GCAGC 3 cut(s) 62, 162, 205
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 2 cut(s) 169, 206
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 100
BsnI GGCC 2 cut(s) 169, 206
Bsp1286I GDGCHC 1 cut(s) 8
Bsp19I CCATGG 1 cut(s) 207
BspACI CCGC 4 cut(s) 36, 103, 137, 162
BspANI GGCC 2 cut(s) 169, 206
BspCNI CTCAG 1 cut(s) 127
BspFNI CGCG 1 cut(s) 38
BspHI TCATGA 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 114
BstDSI CCRYGG 1 cut(s) 207
BstFNI CGCG 1 cut(s) 38
BstHHI GCGC 1 cut(s) 40
BstMAI GTCTC 1 cut(s) 100
BstMWI GCNNNNNNNGC 3 cut(s) 109, 175, 223
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 3 cut(s) 62, 162, 205
BsuRI GGCC 2 cut(s) 169, 206
BtgI CCRYGG 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 6
Cac8I GCNNGC 1 cut(s) 228
CciI TCATGA 1 cut(s) 153
CfoI GCGC 1 cut(s) 40
Cfr13I GGNCC 2 cut(s) 105, 167
CpoI CGGWCCG 1 cut(s) 105
CspI CGGWCCG 1 cut(s) 105
CviAII CATG 2 cut(s) 154, 208
CviJI RGCY 5 cut(s) 169, 175, 206, 226, 306
CviKI_1 RGCY 5 cut(s) 169, 175, 206, 226, 306
DdeI CTNAG 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 2 cut(s) 157, 211
FaiI YATR 4 cut(s) 155, 209, 342, 390
FatI CATG 2 cut(s) 153, 207
FauI CCCGC 1 cut(s) 43
Fnu4HI GCNGC 3 cut(s) 51, 176, 194
Fsp4HI GCNGC 3 cut(s) 51, 176, 194
GlaI GCGC 1 cut(s) 39
GluI GCNGC 3 cut(s) 51, 176, 194
HaeIII GGCC 2 cut(s) 169, 206
HapII CCGG 1 cut(s) 170
HhaI GCGC 1 cut(s) 40
Hin1II CATG 2 cut(s) 157, 211
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HpaII CCGG 1 cut(s) 170
HphI GGTGA 1 cut(s) 134
Hpy188III TCNNGA 1 cut(s) 154
HpyAV CCTTC 3 cut(s) 97, 122, 151
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4V TGCA 1 cut(s) 193
HpyF10VI GCNNNNNNNGC 3 cut(s) 109, 175, 223
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 2 cut(s) 157, 211
HspAI GCGC 1 cut(s) 38
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 3 cut(s) 39, 183, 294
Lsp1109I GCAGC 3 cut(s) 62, 162, 205
MaeIII GTNAC 2 cut(s) 10, 352
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 360
MnlI CCTC 2 cut(s) 123, 139
MseI TTAA 2 cut(s) 74, 365
MspI CCGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 3 cut(s) 109, 175, 223
NcoI CCATGG 1 cut(s) 207
NlaIII CATG 2 cut(s) 157, 211
PagI TCATGA 1 cut(s) 153
PkrI GCNGC 3 cut(s) 52, 177, 195
PshBI ATTAAT 1 cut(s) 74
PspPI GGNCC 2 cut(s) 105, 167
Rsr2I CGGWCCG 1 cut(s) 105
RsrII CGGWCCG 1 cut(s) 105
SaqAI TTAA 2 cut(s) 74, 365
SatI GCNGC 3 cut(s) 51, 176, 194
Sau96I GGNCC 2 cut(s) 105, 167
SduI GDGCHC 1 cut(s) 8
SetI ASST 4 cut(s) 133, 177, 228, 240
SinI GGWCC 1 cut(s) 105
Sse9I AATT 1 cut(s) 360
SsiI CCGC 4 cut(s) 36, 103, 137, 162
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 1 cut(s) 10
TasI AATT 1 cut(s) 360
Tru1I TTAA 2 cut(s) 74, 365
Tru9I TTAA 2 cut(s) 74, 365
TscAI CASTG 1 cut(s) 13
TseI GCWGC 3 cut(s) 50, 175, 193
TspDTI ATGAA 4 cut(s) 60, 141, 142, 170
TspGWI ACGGA 2 cut(s) 97, 383
TspRI CASTG 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 105
VspI ATTAAT 1 cut(s) 74
XapI RAATTY 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.