Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

13717497 .. 13717958

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGCAGAGAGAACTGCAGTGGTTCAACTCTCATCAATTTACTCAGAAAATTTCTGAATTGTTAGAGGTGGAGAAACTAGTTCACCCCTATTATAAGGAGATCCAGAACAAAAACGGAGAATCTGCTAGAGAATTATTCACCAAGGAACACAAATTATTGGCCGAGAGCGGAGAGAAATGGCTAAAGGATACGTCAAATTTTTGCATGCTCGTATCAACTCTCGTTGCCACAGTTGTGTTTGCGGCTGCTTTTACAGTACCTGGAGGTAACGACAACGAAGGAGCTCCAATGTTGTTACAGAAGAAGTCAAGTCACATTCTTGGTATTTGTTGTTTCGGATACAGTAGCTCTATTTTCTTCGGTAACTTCCCTTTTGGTGTTTCTATCAATCCTAACCGGGCGTTATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006810 GO:0006887 GO:0006888 GO:0006996 GO:0007010 GO:0007163 GO:0008092 GO:0008093 GO:0008104 GO:0008150 GO:0009987 GO:0014731 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0019899 GO:0030011 GO:0030016 GO:0030017 GO:0030507 GO:0030674 GO:0031430 GO:0031672 GO:0032940 GO:0033036 GO:0034613 GO:0035088 GO:0035090 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043292 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044459 GO:0044464 GO:0045197 GO:0045199 GO:0046903 GO:0046907 GO:0048193 GO:0051117 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060090 GO:0061245 GO:0070727 GO:0071840 GO:0071944 GO:0072657 GO:0072659 GO:0098590 GO:0099080 GO:0099081 GO:0099512 GO:1990778

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

137

Amino Acids

15.33

Weight (kDa)

6.89

Isoelectric Point (pI)

29.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGG	PF13962	58 - 102	4.5e-13	Domain of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	93
AccBSI	CCGCTC	1 cut(s)	168
AciI	CCGC	2 cut(s)	168, 242
AclWI	GGATC	1 cut(s)	94
AcoI	YGGCCR	1 cut(s)	159
AcsI	RAATTY	2 cut(s)	48, 196
AfaI	GTAC	1 cut(s)	258
AgsI	TTSAA	1 cut(s)	25
AhlI	ACTAGT	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	259
AleI	CACNNNNGTG	1 cut(s)	233
AluBI	AGCT	2 cut(s)	284, 348
AluI	AGCT	2 cut(s)	284, 348
Alw21I	GWGCWC	1 cut(s)	286
AlwI	GGATC	1 cut(s)	94
AlwNI	CAGNNNCTG	1 cut(s)	260
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	245
ApoI	RAATTY	2 cut(s)	48, 196
AsuC2I	CCSGG	1 cut(s)	398
AsuHPI	GGTGA	2 cut(s)	74, 130
BanII	GRGCYC	1 cut(s)	286
Bbv12I	GWGCWC	1 cut(s)	286
BbvI	GCAGC	1 cut(s)	232
BciT130I	CCWGG	1 cut(s)	261
BciVI	GTATCC	2 cut(s)	181, 332
BcnI	CCSGG	1 cut(s)	398
BcuI	ACTAGT	1 cut(s)	76
BfaI	CTAG	2 cut(s)	77, 126
BfmI	CTRYAG	1 cut(s)	14
BfuI	GTATCC	2 cut(s)	181, 332
BisI	GCNGC	2 cut(s)	243, 246
BlsI	GCNGC	2 cut(s)	244, 247
Bme1390I	CCNGG	2 cut(s)	261, 398
BmrFI	CCNGG	2 cut(s)	261, 398
BpmI	CTGGAG	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	398
BsaJI	CCNNGG	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	56
BseXI	GCAGC	1 cut(s)	232
BshFI	GGCC	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	286
BsiSI	CCGG	1 cut(s)	397
BsnI	GGCC	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	1 cut(s)	99
BspACI	CCGC	2 cut(s)	168, 242
BspANI	GGCC	1 cut(s)	161
BspCNI	CTCAG	1 cut(s)	55
BspMAI	CTGCAG	1 cut(s)	18
BspPI	GGATC	1 cut(s)	94
BsrBI	CCGCTC	1 cut(s)	168
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	3 cut(s)	232, 256, 344
BstC8I	GCNNGC	1 cut(s)	206
BstDEI	CTNAG	1 cut(s)	42
BstKTI	GATC	1 cut(s)	102
BstMBI	GATC	1 cut(s)	99
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	1 cut(s)	208
BstSCI	CCNGG	2 cut(s)	259, 396
BstSFI	CTRYAG	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	232
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
BsuI	GTATCC	2 cut(s)	181, 332
BsuRI	GGCC	1 cut(s)	161
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	23
Cac8I	GCNNGC	1 cut(s)	206
CaiI	CAGNNNCTG	1 cut(s)	260
Csp6I	GTAC	1 cut(s)	257
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	5 cut(s)	161, 181, 245, 284, 348
CviKI_1	RGCY	5 cut(s)	161, 181, 245, 284, 348
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	1 cut(s)	101
DpnII	GATC	1 cut(s)	99
EaeI	YGGCCR	1 cut(s)	159
Ecl136II	GAGCTC	1 cut(s)	284
Eco130I	CCWWGG	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	1 cut(s)	208
FaiI	YATR	3 cut(s)	93, 206, 406
FatI	CATG	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	243, 246
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	2 cut(s)	243, 246
FspBI	CTAG	2 cut(s)	77, 126
GluI	GCNGC	2 cut(s)	243, 246
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	161
HapII	CCGG	1 cut(s)	397
Hin1II	CATG	1 cut(s)	208
HinfI	GANTC	1 cut(s)	119
HpaII	CCGG	1 cut(s)	397
HphI	GGTGA	2 cut(s)	74, 130
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	3 cut(s)	45, 55, 338
Hpy188III	TCNNGA	1 cut(s)	103
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	3 cut(s)	232, 256, 344
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	3 cut(s)	4, 16, 204
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	99
LmnI	GCTCC	2 cut(s)	281, 289
LpnPI	CCDG	3 cut(s)	116, 246, 273
Lsp1109I	GCAGC	1 cut(s)	232
MaeI	CTAG	2 cut(s)	77, 126
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	4 cut(s)	266, 294, 311, 362
MalI	GATC	1 cut(s)	101
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	1 cut(s)	99
MboII	GAAGA	2 cut(s)	313, 349
MflI	RGATCY	1 cut(s)	99
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	6 cut(s)	35, 48, 56, 131, 152, 196
MnlI	CCTC	2 cut(s)	58, 257
MslI	CAYNNNNRTG	1 cut(s)	233
MspI	CCGG	1 cut(s)	397
MspR9I	CCNGG	2 cut(s)	261, 398
MvaI	CCWGG	1 cut(s)	261
NciI	CCSGG	1 cut(s)	398
NdeII	GATC	1 cut(s)	99
NlaIII	CATG	1 cut(s)	208
NmeAIII	GCCGAG	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	311
NspI	RCATGY	1 cut(s)	208
OliI	CACNNNNGTG	1 cut(s)	233
PaeI	GCATGC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	2 cut(s)	244, 247
PsiI	TTATAA	1 cut(s)	93
Psp124BI	GAGCTC	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PstI	CTGCAG	1 cut(s)	18
PstNI	CAGNNNCTG	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	99
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
RseI	CAYNNNNRTG	1 cut(s)	233
SacI	GAGCTC	1 cut(s)	286
SatI	GCNGC	2 cut(s)	243, 246
Sau3AI	GATC	1 cut(s)	99
ScrFI	CCNGG	2 cut(s)	261, 398
SduI	GDGCHC	1 cut(s)	286
SetI	ASST	6 cut(s)	69, 194, 262, 268, 286, 350
SfcI	CTRYAG	1 cut(s)	14
SmiMI	CAYNNNNRTG	1 cut(s)	233
SpeI	ACTAGT	1 cut(s)	76
SphI	GCATGC	1 cut(s)	208
Sse9I	AATT	6 cut(s)	35, 48, 56, 131, 152, 196
SsiI	CCGC	2 cut(s)	168, 242
SspMI	CTAG	2 cut(s)	77, 126
SstI	GAGCTC	1 cut(s)	286
StyD4I	CCNGG	2 cut(s)	259, 396
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	3 cut(s)	232, 256, 344
TaiI	ACGT	1 cut(s)	194
TasI	AATT	6 cut(s)	35, 48, 56, 131, 152, 196
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	1 cut(s)	119
TscAI	CASTG	1 cut(s)	23
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	1 cut(s)	245
Tsp45I	GTSAC	1 cut(s)	311
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	23
XapI	RAATTY	2 cut(s)	48, 196
XceI	RCATGY	1 cut(s)	208
XspI	CTAG	2 cut(s)	77, 126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.