Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

13857499 .. 13857865

Gene Structure 367 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGATGATGCCGATGTTGGGCTGGCTGTGCGTTCTATCTTCTTTGCAGCTGTTGGCACTGCTGGTCAGCGCTGCACAACGTGCTGTAGATTGTATCTCCACGAAAGTATATACCAAAATGTGTTGGATCCAAACCGACTAGTTGGACTTTACAAGCAAGTCAAAATTGGCGATCCTTTAGAGACGGGAACTTTAGTCGGACCAGTACATACTAAGGTGTCCAAGGGAGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009269 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016491 GO:0016620 GO:0016903 GO:0033993 GO:0042221 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0071704 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00260 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00260 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

79

Amino Acids

8.45

Weight (kDa)

6.7

Isoelectric Point (pI)

12.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	1 - 73	9.5e-16	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	122, 135, 167
AdeI	CACNNNGTG	1 cut(s)	81
AfaI	GTAC	1 cut(s)	207
AfeI	AGCGCT	1 cut(s)	71
AfiI	CCNNNNNNNGG	1 cut(s)	18
AhlI	ACTAGT	1 cut(s)	139
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	3 cut(s)	122, 135, 167
Aor51HI	AGCGCT	1 cut(s)	71
ApeKI	GCWGC	2 cut(s)	47, 72
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	200
BamHI	GGATCC	1 cut(s)	127
BbvI	GCAGC	2 cut(s)	59, 59
BcoDI	GTCTC	1 cut(s)	176
BcuI	ACTAGT	1 cut(s)	139
BfaI	CTAG	1 cut(s)	140
BfmI	CTRYAG	1 cut(s)	85
BfoI	RGCGCY	1 cut(s)	73
BisI	GCNGC	2 cut(s)	48, 73
BlsI	GCNGC	2 cut(s)	49, 74
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
Bse1I	ACTGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseNI	ACTGG	1 cut(s)	203
BseXI	GCAGC	2 cut(s)	59, 59
BsgI	GTGCAG	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	176
BsmBI	CGTCTC	1 cut(s)	176
Bsp143I	GATC	2 cut(s)	127, 172
BspLI	GGNNCC	1 cut(s)	129
BspPI	GGATC	3 cut(s)	122, 135, 167
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	2 cut(s)	127, 172
BssT1I	CCWWGG	1 cut(s)	222
BstAPI	GCANNNNNTGC	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	10
BstH2I	RGCGCY	1 cut(s)	73
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	2 cut(s)	130, 175
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	2 cut(s)	127, 172
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 81
BstSFI	CTRYAG	1 cut(s)	85
BstV1I	GCAGC	2 cut(s)	59, 59
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	24
CfoI	GCGC	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	206
CviJI	RGCY	3 cut(s)	22, 26, 50
CviKI_1	RGCY	3 cut(s)	22, 26, 50
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	2 cut(s)	129, 174
DpnII	GATC	2 cut(s)	127, 172
DraIII	CACNNNGTG	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	200
Eco47III	AGCGCT	1 cut(s)	71
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
Esp3I	CGTCTC	1 cut(s)	176
FaiI	YATR	3 cut(s)	110, 112, 210
Fnu4HI	GCNGC	2 cut(s)	48, 73
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	48, 73
FspBI	CTAG	1 cut(s)	140
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	2 cut(s)	48, 73
HaeII	RGCGCY	1 cut(s)	73
HhaI	GCGC	1 cut(s)	72
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
Hpy188I	TCNGA	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	2 cut(s)	47, 75
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 81
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	1 cut(s)	80
HspAI	GCGC	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	127, 172
LpnPI	CCDG	3 cut(s)	8, 48, 216
Lsp1109I	GCAGC	2 cut(s)	59, 59
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	1 cut(s)	80
MalI	GATC	2 cut(s)	129, 174
MboI	GATC	2 cut(s)	127, 172
MboII	GAAGA	1 cut(s)	31
MflI	RGATCY	1 cut(s)	127
MluCI	AATT	1 cut(s)	165
MmeI	TCCRAC	3 cut(s)	105, 124, 178
MspA1I	CMGCKG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	28, 81
NdeII	GATC	2 cut(s)	127, 172
NlaIV	GGNNCC	1 cut(s)	129
PkrI	GCNGC	2 cut(s)	49, 74
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	127
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
SatI	GCNGC	2 cut(s)	48, 73
Sau3AI	GATC	2 cut(s)	127, 172
Sau96I	GGNCC	1 cut(s)	200
SetI	ASST	3 cut(s)	52, 83, 219
SfcI	CTRYAG	1 cut(s)	85
SgeI	CNNG	9 cut(s)	35, 75, 93, 113, 152, 166, 170, 198, 215
SinI	GGWCC	1 cut(s)	200
SpeI	ACTAGT	1 cut(s)	139
Sse9I	AATT	1 cut(s)	165
SspMI	CTAG	1 cut(s)	140
StyI	CCWWGG	1 cut(s)	222
TaiI	ACGT	1 cut(s)	83
TasI	AATT	1 cut(s)	165
TatI	WGTACW	1 cut(s)	205
TscAI	CASTG	1 cut(s)	64
TseI	GCWGC	2 cut(s)	47, 72
TspRI	CASTG	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	200
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.