Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

13985599 .. 13987023

Gene Structure 1425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGCAGCAGCCGAATGTGACATGGGCCCAACAGCAGCAGCCGCAGCAATTGATGCATAATCCTATGAGCCAACAGCAGCAAAGTAACCCCCAACAGCAGCAGCTGCATCAATTATTGAATTCTTCAGCGAACCAACATCAGCAAAATCACCCCCAGCAGCAGCTGCAGCAATTATTGCAGATGCCGACGAACCAACAGCTCCAGAATTACTCCCATCAGCAGCAGCAGCGGGAGCCTCAACAACAGCAAGACCCTCAAAACCTGCTGCAGCATCAGCAGCTGCACCAACAGCAACCGCAACGTCAACAGCACCAGCAACAACAATTATCTCAGCCGAATCCGGTAAATAACGGCTCTGTTGCTCCTAACCAGGTCCTGGGCCAAAATTTGCAACAACCGGTTATGTTCTCCCAACATCAACAGCAGCAATTACTAACAGGGAATACCCAATCCCAGCAAGCTGTCCATTCTTCTAGTAAGAATTCATTTCAGGTGCCAACTGGACAACAAAACTCACAGCTCCAGCAGCAGCAACTGGAACCGCAACCAGGCCTTTTACAAAGGCAGCAGCAGGTGGCACAATTGCAACCGTCCCCACAGCAGTTCTTGCAACAGAACATGTCACAGAAAGTACAGCAGCAGCCGCAAGTACAGCAATCATCTCAGCAGGGCATCTCTGAGCAACAACTCCAATTACAGTTGCTGCAGAAATTTCATCAACAGCAGCAGCCACAGTTACTCTCCCCGTCAAGCTCACTTTTGCAGCCTCAACTCTTACAGCAGCAGCTGGCCCACCAACAAAACCAGCAGTTACAACAGTTGCCTATGACTCAGCATCATCAGCAACAGCTAAGTGGCAACAGCTTCTCAACCGACAGACTTCTGAACAACTTTGCAGCTCCTTTGGTGATGCAGTCTCATCATATGCCATCTATCCAGCCCCAGAACCAGCACAAGCCACTTACAGCAATCAGAAGCCATTCTGGTCTTACAGAAGGCGATGGTCCATCATGTTCAACTTCCCCTTCTACTAATAACTGCCAGATGTCCCCATCAAAATACTTGAACAGGAATCAGCAAGGAACGGCCATGTTGTTGGGGGATTCCGTGGCAGAACCTGCTCATAATTTGGTTCAGGAGCTTCAGGGCAAGTCTGATATTCGGATAAAAAATGAGCTGCCCAGCTCAAAGGGACCAGACCAGATAAAATATAAAGGTACAATCACGGATCAGTTAGAAGCTTCATCATCTGGAACATCATATTGTCTGGATGCTAGCACAATCCATCAGAACTATGCACTCCCCACCTTCTGTTTGGATGGTGATGTTCAATCGAATCCTCGGAGCAGTCTTCCATTTTCCGCTAATATTGATGGATTGGCACCGGACACTTTGTTGTCAAGGGGATATGACTCTCAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0046983 GO:0048364 GO:0048366 GO:0048367 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

475

Amino Acids

53.48

Weight (kDa)

6.85

Isoelectric Point (pI)

87.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	562
Acc36I	ACCTGC	3 cut(s)	270, 562, 1126
AccB1I	GGYRCC	2 cut(s)	493, 1381
AccB7I	CCANNNNNTGG	1 cut(s)	376
AciI	CCGC	6 cut(s)	41, 229, 296, 542, 644, 1362
AclWI	GGATC	1 cut(s)	1236
AcoI	YGGCCR	1 cut(s)	1086
AcsI	RAATTY	4 cut(s)	118, 385, 481, 710
AcuI	CTGAAG	2 cut(s)	108, 1127
AfaI	GTAC	3 cut(s)	633, 651, 1219
AfiI	CCNNNNNNNGG	2 cut(s)	376, 548
AflIII	ACRYGT	1 cut(s)	618
AgeI	ACCGGT	1 cut(s)	397
AgsI	TTSAA	4 cut(s)	118, 1017, 1066, 1331
AjnI	CCWGG	3 cut(s)	369, 375, 547
Alw26I	GTCTC	1 cut(s)	921
AlwI	GGATC	1 cut(s)	1236
AlwNI	CAGNNNCTG	8 cut(s)	103, 163, 280, 376, 535, 703, 787, 1118
AoxI	GGCC	5 cut(s)	24, 379, 550, 789, 1086
ApaI	GGGCCC	1 cut(s)	28
ApoI	RAATTY	4 cut(s)	118, 385, 481, 710
AsiGI	ACCGGT	1 cut(s)	397
Asp700I	GAANNNNTTC	1 cut(s)	979
AspS9I	GGNCC	7 cut(s)	24, 25, 373, 379, 790, 1004, 1193
AsuHPI	GGTGA	3 cut(s)	140, 919, 1334
AsuNHI	GCTAGC	1 cut(s)	1274
AvaII	GGWCC	3 cut(s)	373, 1004, 1193
BaeGI	GKGCMC	1 cut(s)	28
BanI	GGYRCC	2 cut(s)	493, 1381
BanII	GRGCYC	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	1343
BccI	CCATC	8 cut(s)	222, 937, 995, 1015, 1060, 1293, 1313, 1367
BceAI	ACGGC	2 cut(s)	367, 1101
BciT130I	CCWGG	3 cut(s)	371, 377, 549
BcoDI	GTCTC	1 cut(s)	921
BfaI	CTAG	2 cut(s)	474, 1275
BfmI	CTRYAG	3 cut(s)	164, 266, 704
BfuAI	ACCTGC	3 cut(s)	270, 562, 1126
Bme1390I	CCNGG	3 cut(s)	371, 377, 549
Bme18I	GGWCC	3 cut(s)	373, 1004, 1193
BmgT120I	GGNCC	7 cut(s)	24, 25, 373, 379, 790, 1004, 1193
BmiI	GGNNCC	6 cut(s)	26, 234, 495, 540, 1194, 1383
BmrFI	CCNGG	3 cut(s)	371, 377, 549
BmsI	GCATC	8 cut(s)	42, 115, 171, 280, 681, 844, 900, 1261
BmtI	GCTAGC	1 cut(s)	1278
BpiI	GAAGAC	1 cut(s)	1343
BpmI	CTGGAG	2 cut(s)	185, 506
BsaJI	CCNNGG	3 cut(s)	376, 1107, 1340
BsaWI	WCCGGW	3 cut(s)	340, 397, 1384
Bsc4I	CCNNNNNNNGG	2 cut(s)	376, 548
Bse118I	RCCGGY	1 cut(s)	397
Bse1I	ACTGG	2 cut(s)	505, 540
BseBI	CCWGG	3 cut(s)	371, 377, 549
BseDI	CCNNGG	3 cut(s)	376, 1107, 1340
BseGI	GGATG	2 cut(s)	1276, 1324
BseLI	CCNNNNNNNGG	2 cut(s)	376, 548
BseMII	CTCAG	4 cut(s)	344, 669, 677, 845
BseNI	ACTGG	2 cut(s)	505, 540
BseSI	GKGCMC	1 cut(s)	28
BseYI	CCCAGC	3 cut(s)	153, 453, 1181
BsgI	GTGCAG	1 cut(s)	266
BshFI	GGCC	5 cut(s)	26, 381, 552, 791, 1088
BshNI	GGYRCC	2 cut(s)	493, 1381
BshTI	ACCGGT	1 cut(s)	397
BsiSI	CCGG	3 cut(s)	341, 398, 1385
BslFI	GGGAC	3 cut(s)	577, 1033, 1206
BslI	CCNNNNNNNGG	2 cut(s)	376, 548
BsmAI	GTCTC	1 cut(s)	921
BsmFI	GGGAC	3 cut(s)	577, 1033, 1206
BsnI	GGCC	5 cut(s)	26, 381, 552, 791, 1088
Bsp120I	GGGCCC	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	28
Bsp143I	GATC	1 cut(s)	1228
BspACI	CCGC	6 cut(s)	41, 229, 296, 542, 644, 1362
BspANI	GGCC	5 cut(s)	26, 381, 552, 791, 1088
BspCNI	CTCAG	4 cut(s)	343, 670, 676, 844
BspLI	GGNNCC	6 cut(s)	26, 234, 495, 540, 1194, 1383
BspMAI	CTGCAG	3 cut(s)	168, 270, 708
BspMI	ACCTGC	3 cut(s)	270, 562, 1126
BspOI	GCTAGC	1 cut(s)	1278
BspPI	GGATC	1 cut(s)	1236
BspT107I	GGYRCC	2 cut(s)	493, 1381
BsrFI	RCCGGY	1 cut(s)	397
BsrI	ACTGG	2 cut(s)	505, 540
BssAI	RCCGGY	1 cut(s)	397
BssECI	CCNNGG	3 cut(s)	376, 1107, 1340
BssMI	GATC	1 cut(s)	1228
Bst2UI	CCWGG	3 cut(s)	371, 377, 549
Bst4CI	ACNGT	4 cut(s)	591, 699, 735, 819
BstAPI	GCANNNNNTGC	6 cut(s)	52, 103, 163, 175, 607, 1118
BstC8I	GCNNGC	3 cut(s)	459, 789, 1276
BstDEI	CTNAG	5 cut(s)	330, 663, 678, 831, 851
BstDSI	CCRYGG	1 cut(s)	1107
BstF5I	GGATG	2 cut(s)	1276, 1324
BstKTI	GATC	1 cut(s)	1231
BstMAI	GTCTC	1 cut(s)	921
BstMBI	GATC	1 cut(s)	1228
BstNI	CCWGG	3 cut(s)	371, 377, 549
BstNSI	RCATGY	1 cut(s)	622
BstSCI	CCNGG	3 cut(s)	369, 375, 547
BstSFI	CTRYAG	3 cut(s)	164, 266, 704
BstSLI	GKGCMC	1 cut(s)	28
BstV2I	GAAGAC	1 cut(s)	1343
BstXI	CCANNNNNNTGG	1 cut(s)	1096
BsuRI	GGCC	5 cut(s)	26, 381, 552, 791, 1088
BtgI	CCRYGG	1 cut(s)	1107
BtgZI	GCGATG	1 cut(s)	1014
BtsCI	GGATG	2 cut(s)	1276, 1324
BveI	ACCTGC	3 cut(s)	270, 562, 1126
Cac8I	GCNNGC	3 cut(s)	459, 789, 1276
CaiI	CAGNNNCTG	8 cut(s)	103, 163, 280, 376, 535, 703, 787, 1118
Cfr10I	RCCGGY	1 cut(s)	397
Cfr13I	GGNCC	7 cut(s)	24, 25, 373, 379, 790, 1004, 1193
CsiI	ACCWGGT	1 cut(s)	369
Csp6I	GTAC	3 cut(s)	632, 650, 1218
CspAI	ACCGGT	1 cut(s)	397
CviAII	CATG	4 cut(s)	21, 619, 1011, 1090
CviQI	GTAC	3 cut(s)	632, 650, 1218
DdeI	CTNAG	5 cut(s)	330, 663, 678, 831, 851
DpnI	GATC	1 cut(s)	1230
DpnII	GATC	1 cut(s)	1228
EaeI	YGGCCR	1 cut(s)	1086
Eco147I	AGGCCT	1 cut(s)	552
Eco24I	GRGCYC	1 cut(s)	28
Eco47I	GGWCC	3 cut(s)	373, 1004, 1193
Eco57I	CTGAAG	2 cut(s)	108, 1127
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRI	GAATTC	2 cut(s)	118, 481
EcoRII	CCWGG	3 cut(s)	369, 375, 547
EcoT22I	ATGCAT	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	28
FaeI	CATG	4 cut(s)	24, 622, 1014, 1093
FaqI	GGGAC	3 cut(s)	577, 1033, 1206
FatI	CATG	4 cut(s)	20, 618, 1010, 1089
FauI	CCCGC	1 cut(s)	222
FauNDI	CATATG	1 cut(s)	924
FokI	GGATG	2 cut(s)	1283, 1331
FriOI	GRGCYC	1 cut(s)	28
FspBI	CTAG	2 cut(s)	474, 1275
GsaI	CCCAGC	3 cut(s)	157, 457, 1185
GsuI	CTGGAG	2 cut(s)	185, 506
HaeIII	GGCC	5 cut(s)	26, 381, 552, 791, 1088
HapII	CCGG	3 cut(s)	341, 398, 1385
Hin1II	CATG	4 cut(s)	24, 622, 1014, 1093
HincII	GTYRAC	1 cut(s)	305
HindII	GTYRAC	1 cut(s)	305
HindIII	AAGCTT	1 cut(s)	1239
HinfI	GANTC	6 cut(s)	337, 829, 1072, 1103, 1336, 1412
HpaII	CCGG	3 cut(s)	341, 398, 1385
HphI	GGTGA	3 cut(s)	140, 919, 1334
Hpy166II	GTNNAC	1 cut(s)	305
Hpy188I	TCNGA	7 cut(s)	679, 885, 974, 1156, 1164, 1290, 1344
Hpy188III	TCNNGA	5 cut(s)	202, 1136, 1251, 1268, 1422
Hpy8I	GTNNAC	1 cut(s)	305
Hpy99I	CGWCG	1 cut(s)	190
HpyAV	CCTTC	3 cut(s)	989, 1035, 1318
HpyCH4III	ACNGT	4 cut(s)	591, 699, 735, 819
HpyCH4IV	ACGT	1 cut(s)	301
HpyF3I	CTNAG	5 cut(s)	330, 663, 678, 831, 851
HpySE526I	ACGT	1 cut(s)	301
Hsp92II	CATG	4 cut(s)	24, 622, 1014, 1093
Kzo9I	GATC	1 cut(s)	1228
LmnI	GCTCC	7 cut(s)	204, 232, 367, 525, 904, 1138, 1344
LweI	GCATC	8 cut(s)	42, 115, 171, 280, 681, 844, 900, 1261
MabI	ACCWGGT	1 cut(s)	369
MaeI	CTAG	2 cut(s)	474, 1275
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	5 cut(s)	16, 83, 621, 735, 810
MalI	GATC	1 cut(s)	1230
MboI	GATC	1 cut(s)	1228
MboII	GAAGA	3 cut(s)	114, 462, 1343
MfeI	CAATTG	2 cut(s)	47, 581
MhlI	GDGCHC	1 cut(s)	28
MlyI	GAGTC	2 cut(s)	823, 1406
MnlI	CCTC	4 cut(s)	246, 264, 777, 1350
Mph1103I	ATGCAT	1 cut(s)	57
MroXI	GAANNNNTTC	1 cut(s)	979
MspA1I	CMGCKG	5 cut(s)	103, 163, 229, 280, 787
MspI	CCGG	3 cut(s)	341, 398, 1385
MspR9I	CCNGG	3 cut(s)	371, 377, 549
MunI	CAATTG	2 cut(s)	47, 581
MvaI	CCWGG	3 cut(s)	371, 377, 549
NdeI	CATATG	1 cut(s)	924
NdeII	GATC	1 cut(s)	1228
NheI	GCTAGC	1 cut(s)	1274
NlaIII	CATG	4 cut(s)	24, 622, 1014, 1093
NlaIV	GGNNCC	6 cut(s)	26, 234, 495, 540, 1194, 1383
NmuCI	GTSAC	2 cut(s)	16, 621
NsiI	ATGCAT	1 cut(s)	57
NspI	RCATGY	1 cut(s)	622
PaqCI	CACCTGC	1 cut(s)	562
PceI	AGGCCT	1 cut(s)	552
PciI	ACATGT	1 cut(s)	618
PdmI	GAANNNNTTC	1 cut(s)	979
PfeI	GAWTC	4 cut(s)	337, 1072, 1103, 1336
PflMI	CCANNNNNTGG	1 cut(s)	376
PinAI	ACCGGT	1 cut(s)	397
PleI	GAGTC	2 cut(s)	823, 1406
PpsI	GAGTC	2 cut(s)	823, 1406
PpuMI	RGGWCCY	1 cut(s)	373
PscI	ACATGT	1 cut(s)	618
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	3 cut(s)	369, 375, 547
PspFI	CCCAGC	3 cut(s)	153, 453, 1181
PspGI	CCWGG	3 cut(s)	369, 375, 547
PspN4I	GGNNCC	6 cut(s)	26, 234, 495, 540, 1194, 1383
PspOMI	GGGCCC	1 cut(s)	24
PspPI	GGNCC	7 cut(s)	24, 25, 373, 379, 790, 1004, 1193
PspPPI	RGGWCCY	1 cut(s)	373
PstI	CTGCAG	3 cut(s)	168, 270, 708
PstNI	CAGNNNCTG	8 cut(s)	103, 163, 280, 376, 535, 703, 787, 1118
PvuII	CAGCTG	4 cut(s)	103, 163, 280, 787
RsaI	GTAC	3 cut(s)	633, 651, 1219
RsaNI	GTAC	3 cut(s)	632, 650, 1218
Sau3AI	GATC	1 cut(s)	1228
Sau96I	GGNCC	7 cut(s)	24, 25, 373, 379, 790, 1004, 1193
SchI	GAGTC	2 cut(s)	823, 1406
ScrFI	CCNGG	3 cut(s)	371, 377, 549
SduI	GDGCHC	1 cut(s)	28
SexAI	ACCWGGT	1 cut(s)	369
SfaNI	GCATC	8 cut(s)	42, 115, 171, 280, 681, 844, 900, 1261
SfcI	CTRYAG	3 cut(s)	164, 266, 704
SinI	GGWCC	3 cut(s)	373, 1004, 1193
SseBI	AGGCCT	1 cut(s)	552
SsiI	CCGC	6 cut(s)	41, 229, 296, 542, 644, 1362
SspI	AATATT	1 cut(s)	1369
SspMI	CTAG	2 cut(s)	474, 1275
StuI	AGGCCT	1 cut(s)	552
StyD4I	CCNGG	3 cut(s)	369, 375, 547
TaaI	ACNGT	4 cut(s)	591, 699, 735, 819
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	1 cut(s)	1334
TatI	WGTACW	2 cut(s)	631, 649
TauI	GCSGC	2 cut(s)	43, 646
TfiI	GAWTC	4 cut(s)	337, 1072, 1103, 1336
TseFI	GTSAC	2 cut(s)	16, 621
Tsp45I	GTSAC	2 cut(s)	16, 621
TspDTI	ATGAA	3 cut(s)	474, 704, 1233
TspGWI	ACGGA	2 cut(s)	1096, 1241
Van91I	CCANNNNNTGG	1 cut(s)	376
VpaK11BI	GGWCC	3 cut(s)	373, 1004, 1193
XapI	RAATTY	4 cut(s)	118, 385, 481, 710
XceI	RCATGY	1 cut(s)	622
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1312
XmnI	GAANNNNTTC	1 cut(s)	979
XspI	CTAG	2 cut(s)	474, 1275
Zsp2I	ATGCAT	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.