pycom15g19950
TCP Family

1-phosphatidylinositol-3-phosphate 5-kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
14273433 .. 14274116
684 bp
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UTR
Exon/CDS
Intron
pycom15g19950.2

Sequence Viewer

Length: 351 bp
ATGCCAACTTCTCCAATTTTTGTGGGGAACAAGGCAAAGCGGGTACTAGAGAGGGCTGTCTGGAATGATACTGCATTCCTTGCTTCGATAGATGTCATGGACTACTCGTTACTGGTCGGCGTGGACGAGGAAAAGGATGAGCTAGTTCTGGGGATCATAGATTTTATGAGGCAATACACATGGGACAAGCACCTTGAAACTTGGGTGAAGACCTCAGGAATTCTCGGCGGAGCCAAGAACACGTCTCCAACCGTGATTTCTCCCCAGCAATACAAGAAACGATTCAGGAAAGCTATGACAACTTATTTCCTCATGGTACCCGATCAGTCACATCTTCAAGGTCTCCCCTAA

Protein Analysis

117

Amino Acids

13.22

Weight (kDa)

7.97

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 316
AccB1I GGYRCC 1 cut(s) 316
AciI CCGC 2 cut(s) 40, 228
AclWI GGATC 1 cut(s) 161
AcsI RAATTY 1 cut(s) 219
AfaI GTAC 2 cut(s) 45, 318
AflIII ACRYGT 1 cut(s) 240
AgsI TTSAA 2 cut(s) 197, 338
AjiI CACGTC 1 cut(s) 243
AjuI GAANNNNNNNTTGG 2 cut(s) 241, 273
AluBI AGCT 2 cut(s) 142, 293
AluI AGCT 2 cut(s) 142, 293
Alw26I GTCTC 2 cut(s) 249, 347
AlwI GGATC 1 cut(s) 161
ApoI RAATTY 1 cut(s) 219
Asp700I GAANNNNTTC 1 cut(s) 281
Asp718I GGTACC 1 cut(s) 316
AsuHPI GGTGA 1 cut(s) 217
AxyI CCTNAGG 1 cut(s) 214
BanI GGYRCC 1 cut(s) 316
BbsI GAAGAC 1 cut(s) 215
BcoDI GTCTC 2 cut(s) 249, 347
BfaI CTAG 2 cut(s) 47, 143
BmgBI CACGTC 1 cut(s) 243
BmiI GGNNCC 2 cut(s) 232, 318
BpiI GAAGAC 1 cut(s) 215
BsaI GGTCTC 1 cut(s) 347
Bse1I ACTGG 1 cut(s) 117
Bse21I CCTNAGG 1 cut(s) 214
BseGI GGATG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 1 cut(s) 117
BseYI CCCAGC 1 cut(s) 264
BshNI GGYRCC 1 cut(s) 316
BslFI GGGAC 1 cut(s) 197
BsmAI GTCTC 2 cut(s) 249, 347
BsmBI CGTCTC 1 cut(s) 249
BsmFI GGGAC 1 cut(s) 197
BsmI GAATGC 1 cut(s) 74
Bso31I GGTCTC 1 cut(s) 347
Bsp143I GATC 2 cut(s) 153, 322
BspACI CCGC 2 cut(s) 40, 228
BspCNI CTCAG 1 cut(s) 227
BspLI GGNNCC 2 cut(s) 232, 318
BspPI GGATC 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 316
BspTNI GGTCTC 1 cut(s) 347
BsrI ACTGG 1 cut(s) 117
BssMI GATC 2 cut(s) 153, 322
Bst4CI ACNGT 1 cut(s) 253
BstAPI GCANNNNNTGC 1 cut(s) 80
BstDEI CTNAG 1 cut(s) 214
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 2 cut(s) 156, 325
BstMAI GTCTC 2 cut(s) 249, 347
BstMBI GATC 2 cut(s) 153, 322
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstV2I GAAGAC 1 cut(s) 215
Bsu36I CCTNAGG 1 cut(s) 214
BtrI CACGTC 1 cut(s) 243
BtsCI GGATG 1 cut(s) 142
Csp6I GTAC 2 cut(s) 44, 317
CspCI CAANNNNNGTGG 1 cut(s) 38
CviAII CATG 3 cut(s) 97, 180, 313
CviJI RGCY 4 cut(s) 56, 142, 233, 293
CviKI_1 RGCY 4 cut(s) 56, 142, 233, 293
CviQI GTAC 2 cut(s) 44, 317
DdeI CTNAG 1 cut(s) 214
DpnI GATC 2 cut(s) 155, 324
DpnII GATC 2 cut(s) 153, 322
EciI GGCGGA 1 cut(s) 243
Eco31I GGTCTC 1 cut(s) 347
Eco81I CCTNAGG 1 cut(s) 214
EcoRI GAATTC 1 cut(s) 219
Esp3I CGTCTC 1 cut(s) 249
FaeI CATG 3 cut(s) 100, 183, 316
FaiI YATR 6 cut(s) 98, 158, 167, 181, 296, 314
FaqI GGGAC 1 cut(s) 197
FatI CATG 3 cut(s) 96, 179, 312
FauI CCCGC 1 cut(s) 33
FokI GGATG 1 cut(s) 149
FspBI CTAG 2 cut(s) 47, 143
GsaI CCCAGC 1 cut(s) 268
Hin1II CATG 3 cut(s) 100, 183, 316
HinfI GANTC 1 cut(s) 282
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 1 cut(s) 124
Hpy188III TCNNGA 3 cut(s) 61, 216, 286
Hpy8I GTNNAC 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 1 cut(s) 74
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 214
HpySE526I ACGT 1 cut(s) 242
Hsp92II CATG 3 cut(s) 100, 183, 316
KpnI GGTACC 1 cut(s) 320
Kzo9I GATC 2 cut(s) 153, 322
LmnI GCTCC 1 cut(s) 230
LpnPI CCDG 6 cut(s) 46, 98, 134, 201, 271, 278
MaeI CTAG 2 cut(s) 47, 143
MaeII ACGT 1 cut(s) 242
MaeIII GTNAC 2 cut(s) 108, 327
MalI GATC 2 cut(s) 155, 324
MboI GATC 2 cut(s) 153, 322
MboII GAAGA 2 cut(s) 220, 326
MluCI AATT 2 cut(s) 15, 219
MmeI TCCRAC 1 cut(s) 272
MnlI CCTC 5 cut(s) 45, 121, 162, 223, 320
MroXI GAANNNNTTC 1 cut(s) 281
Mva1269I GAATGC 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 2 cut(s) 153, 322
NlaIII CATG 3 cut(s) 100, 183, 316
NlaIV GGNNCC 2 cut(s) 232, 318
NmeAIII GCCGAG 1 cut(s) 204
NmuCI GTSAC 1 cut(s) 327
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PctI GAATGC 1 cut(s) 74
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 1 cut(s) 282
PspFI CCCAGC 1 cut(s) 264
PspN4I GGNNCC 2 cut(s) 232, 318
RsaI GTAC 2 cut(s) 45, 318
RsaNI GTAC 2 cut(s) 44, 317
Sau3AI GATC 2 cut(s) 153, 322
SetI ASST 6 cut(s) 144, 195, 215, 245, 295, 343
Sse9I AATT 2 cut(s) 15, 219
SsiI CCGC 2 cut(s) 40, 228
SspMI CTAG 2 cut(s) 47, 143
TaaI ACNGT 1 cut(s) 253
TaiI ACGT 1 cut(s) 245
TaqI TCGA 1 cut(s) 86
TasI AATT 2 cut(s) 15, 219
TfiI GAWTC 1 cut(s) 282
TseFI GTSAC 1 cut(s) 327
Tsp45I GTSAC 1 cut(s) 327
XapI RAATTY 1 cut(s) 219
XmnI GAANNNNTTC 1 cut(s) 281
XspI CTAG 2 cut(s) 47, 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.