pycom15g20230

AT-rich interactive domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
14430206 .. 14430585
380 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 330 bp
ATGAGTGATACCGAAGAGAAGGAGGAAACTGGACATGAATTGCCAGTTGATGCTTCAAATAATGGGAAACCAGAAAATGATCATAACGAGCAGAATAATTCTCCGAATTCTGGAGATTCTGGACCGGTCCAGGAAACCCCGAATCCTGCTGAAAATGGCGAAGTTCTACCCAATAAGACAGACGTGGAGATGACCGCTGATGATAACACTAATGTAGAAGTAGAACCACTGTCCATTTCGCAGCAATCTGATAGGGATTTGCCTCCTCCATCAGTCACAATAAATGGGCGAACAATTAGTCAAGCCAGATACCGAATCCTTAAAGGATGA

Protein Analysis

110

Amino Acids

11.84

Weight (kDa)

4.22

Isoelectric Point (pI)

47.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 195
AcsI RAATTY 1 cut(s) 106
AfiI CCNNNNNNNGG 1 cut(s) 110
AgeI ACCGGT 1 cut(s) 124
AgsI TTSAA 1 cut(s) 57
AjiI CACGTC 1 cut(s) 184
AjnI CCWGG 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 241
ApoI RAATTY 1 cut(s) 106
ArsI GACNNNNNNTTYG 2 cut(s) 283, 315
AsiGI ACCGGT 1 cut(s) 124
AspS9I GGNCC 2 cut(s) 122, 127
AvaII GGWCC 2 cut(s) 122, 127
BbvI GCAGC 1 cut(s) 253
BccI CCATC 1 cut(s) 277
BciT130I CCWGG 1 cut(s) 131
BclI TGATCA 1 cut(s) 79
BisI GCNGC 1 cut(s) 242
BlsI GCNGC 1 cut(s) 243
Bme1390I CCNGG 1 cut(s) 131
Bme18I GGWCC 2 cut(s) 122, 127
BmgBI CACGTC 1 cut(s) 184
BmgT120I GGNCC 2 cut(s) 122, 127
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 40
BpmI CTGGAG 1 cut(s) 132
BsaWI WCCGGW 1 cut(s) 124
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse118I RCCGGY 1 cut(s) 124
Bse1I ACTGG 2 cut(s) 34, 44
BseBI CCWGG 1 cut(s) 131
BseLI CCNNNNNNNGG 1 cut(s) 110
BseNI ACTGG 2 cut(s) 34, 44
BseRI GAGGAG 1 cut(s) 255
BseXI GCAGC 1 cut(s) 253
BshTI ACCGGT 1 cut(s) 124
BsiSI CCGG 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 110
Bsp143I GATC 1 cut(s) 79
BspACI CCGC 1 cut(s) 195
BsrFI RCCGGY 1 cut(s) 124
BsrI ACTGG 2 cut(s) 34, 44
BssAI RCCGGY 1 cut(s) 124
BssMI GATC 1 cut(s) 79
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 231
Bst6I CTCTTC 1 cut(s) 9
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstNI CCWGG 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 253
BtrI CACGTC 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 227
Cfr10I RCCGGY 1 cut(s) 124
Cfr13I GGNCC 2 cut(s) 122, 127
CspAI ACCGGT 1 cut(s) 124
CviAII CATG 1 cut(s) 35
CviJI RGCY 1 cut(s) 305
CviKI_1 RGCY 1 cut(s) 305
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Eco47I GGWCC 2 cut(s) 122, 127
EcoRI GAATTC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 129
FaeI CATG 1 cut(s) 38
FaiI YATR 2 cut(s) 36, 84
FatI CATG 1 cut(s) 34
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 242
GluI GCNGC 1 cut(s) 242
GsuI CTGGAG 1 cut(s) 132
HapII CCGG 1 cut(s) 125
Hin1II CATG 1 cut(s) 38
HinfI GANTC 3 cut(s) 116, 142, 315
HpaII CCGG 1 cut(s) 125
Hpy188I TCNGA 2 cut(s) 105, 250
Hpy188III TCNNGA 2 cut(s) 111, 120
HpyAV CCTTC 1 cut(s) 13
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4IV ACGT 1 cut(s) 183
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 1 cut(s) 38
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 1 cut(s) 79
Lsp1109I GCAGC 1 cut(s) 253
LweI GCATC 1 cut(s) 40
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 274
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 1 cut(s) 26
MluCI AATT 4 cut(s) 38, 97, 106, 294
MnlI CCTC 3 cut(s) 16, 273, 276
MseI TTAA 1 cut(s) 321
MspA1I CMGCKG 1 cut(s) 197
MspI CCGG 1 cut(s) 125
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
NdeII GATC 1 cut(s) 79
NlaIII CATG 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 274
PfeI GAWTC 3 cut(s) 116, 142, 315
PfoI TCCNGGA 1 cut(s) 129
PinAI ACCGGT 1 cut(s) 124
PkrI GCNGC 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspPI GGNCC 2 cut(s) 122, 127
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 1 cut(s) 242
Sau3AI GATC 1 cut(s) 79
Sau96I GGNCC 2 cut(s) 122, 127
ScrFI CCNGG 1 cut(s) 131
SetI ASST 1 cut(s) 186
SfaNI GCATC 1 cut(s) 40
SinI GGWCC 2 cut(s) 122, 127
Sse9I AATT 4 cut(s) 38, 97, 106, 294
SsiI CCGC 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 231
TaiI ACGT 1 cut(s) 186
TasI AATT 4 cut(s) 38, 97, 106, 294
TfiI GAWTC 3 cut(s) 116, 142, 315
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 1 cut(s) 234
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 1 cut(s) 241
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 1 cut(s) 51
TspRI CASTG 1 cut(s) 234
VpaK11BI GGWCC 2 cut(s) 122, 127
XapI RAATTY 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.