Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

14701441 .. 14702105

Gene Structure 665 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTTAGGGAGTATTAAACCAGCGGCCCAGCCCAACAAGGCCTGCTCCTACTTGCTTCGCTCTCCATTTCCCAAAAACCCCACACCTGGCAACCCTGAAGGAAATCCTAACCCGACGACCCGTGGCGGCGACGATCCGCCTTACAGTCCCGGCGGGAGCCGCCCGACCCGTAGCTCCGGTGGGTCCCGCTCTGGGTCAATACAGGCTAAACCTGATGGCCTTCTGCAAGGACTTCAACGCCCGGACCCAAAAGTACAAACCCGAAACCCCCATGGCGGTGATCATCACCGCCTTCAAAGACAACACCTTCGAGTTCACTGTGAGGTCGCCGTCCGTCACCTGGTACTTGAAGAAGGCCGCCGGGATCGAGTCTGGCAGCAGTCGTCCAGGACACGCGGTGGCGTCGACGCTATCGGTGAGGCACGTGTACGATCGATCGCGAAGGTGAAGCAGTCCGACCCGTATTGCCAGTACATGCCGTTGGAGTCCATATGTAAGTCGGTTATTGGTACGGCTAATTCTATGGGGATTAAGGTTGCTAAGGAATTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0032543 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

185

Amino Acids

20.01

Weight (kDa)

10.02

Isoelectric Point (pI)

62.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11	PF00298	137 - 179	4.1e-11	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	189
AccI	GTMKAC	1 cut(s)	405
AccII	CGCG	2 cut(s)	396, 440
AclWI	GGATC	2 cut(s)	128, 372
AcuI	CTGAAG	1 cut(s)	117
AcvI	CACGTG	1 cut(s)	425
AcyI	GRCGYC	1 cut(s)	402
AdeI	CACNNNGTG	1 cut(s)	398
AfaI	GTAC	5 cut(s)	255, 345, 429, 473, 511
AfiI	CCNNNNNNNGG	4 cut(s)	86, 192, 275, 340
AflIII	ACRYGT	1 cut(s)	424
AgsI	TTSAA	3 cut(s)	236, 296, 350
AjnI	CCWGG	3 cut(s)	85, 339, 386
AluBI	AGCT	1 cut(s)	174
AluI	AGCT	1 cut(s)	174
AlwI	GGATC	2 cut(s)	128, 372
AoxI	GGCC	4 cut(s)	24, 39, 217, 355
ApeKI	GCWGC	1 cut(s)	376
ArsI	GACNNNNNNTTYG	2 cut(s)	291, 323
AspS9I	GGNCC	3 cut(s)	25, 183, 244
AsuC2I	CCSGG	3 cut(s)	150, 242, 362
AsuHPI	GGTGA	5 cut(s)	278, 290, 329, 428, 457
AvaII	GGWCC	2 cut(s)	183, 244
BbrPI	CACGTG	1 cut(s)	425
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	1 cut(s)	209
BceAI	ACGGC	3 cut(s)	314, 463, 528
BciT130I	CCWGG	3 cut(s)	87, 341, 388
BclI	TGATCA	1 cut(s)	280
BcnI	CCSGG	3 cut(s)	150, 242, 362
BisI	GCNGC	5 cut(s)	24, 127, 160, 358, 377
BlsI	GCNGC	5 cut(s)	25, 128, 161, 359, 378
Bme1390I	CCNGG	6 cut(s)	87, 150, 242, 341, 362, 388
Bme18I	GGWCC	2 cut(s)	183, 244
BmgT120I	GGNCC	3 cut(s)	25, 183, 244
BmiI	GGNNCC	4 cut(s)	158, 184, 185, 246
BmrFI	CCNGG	6 cut(s)	87, 150, 242, 341, 362, 388
Bpu10I	CCTNAGC	1 cut(s)	540
BpuMI	CCSGG	3 cut(s)	150, 242, 362
Bsa29I	ATCGAT	1 cut(s)	434
BsaAI	YACGTR	1 cut(s)	425
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	2 cut(s)	121, 271
BsaWI	WCCGGW	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 192, 275, 340
Bse1I	ACTGG	1 cut(s)	469
BseBI	CCWGG	3 cut(s)	87, 341, 388
BseCI	ATCGAT	1 cut(s)	434
BseDI	CCNNGG	2 cut(s)	121, 271
BseLI	CCNNNNNNNGG	4 cut(s)	86, 192, 275, 340
BseNI	ACTGG	1 cut(s)	469
BseXI	GCAGC	1 cut(s)	388
BseYI	CCCAGC	1 cut(s)	27
Bsh1236I	CGCG	2 cut(s)	396, 440
Bsh1285I	CGRYCG	2 cut(s)	434, 438
BshFI	GGCC	4 cut(s)	26, 41, 219, 357
BshVI	ATCGAT	1 cut(s)	434
BsiEI	CGRYCG	2 cut(s)	434, 438
BsiSI	CCGG	4 cut(s)	150, 177, 242, 361
BslFI	GGGAC	2 cut(s)	132, 169
BslI	CCNNNNNNNGG	4 cut(s)	86, 192, 275, 340
BsmFI	GGGAC	2 cut(s)	132, 169
BsnI	GGCC	4 cut(s)	26, 41, 219, 357
Bsp143I	GATC	5 cut(s)	133, 280, 364, 431, 435
Bsp19I	CCATGG	1 cut(s)	271
Bsp68I	TCGCGA	1 cut(s)	440
BspANI	GGCC	4 cut(s)	26, 41, 219, 357
BspDI	ATCGAT	1 cut(s)	434
BspFNI	CGCG	2 cut(s)	396, 440
BspLI	GGNNCC	4 cut(s)	158, 184, 185, 246
BspPI	GGATC	2 cut(s)	128, 372
BsrBI	CCGCTC	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	469
BssECI	CCNNGG	2 cut(s)	121, 271
BssMI	GATC	5 cut(s)	133, 280, 364, 431, 435
BssNI	GRCGYC	1 cut(s)	402
BssT1I	CCWWGG	1 cut(s)	271
Bst2UI	CCWGG	3 cut(s)	87, 341, 388
Bst4CI	ACNGT	2 cut(s)	146, 320
BstACI	GRCGYC	1 cut(s)	402
BstBAI	YACGTR	1 cut(s)	425
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	540
BstDSI	CCRYGG	2 cut(s)	121, 271
BstFNI	CGCG	2 cut(s)	396, 440
BstKTI	GATC	5 cut(s)	136, 283, 367, 434, 438
BstMBI	GATC	5 cut(s)	133, 280, 364, 431, 435
BstMCI	CGRYCG	2 cut(s)	434, 438
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstNI	CCWGG	3 cut(s)	87, 341, 388
BstNSI	RCATGY	1 cut(s)	478
BstSCI	CCNGG	6 cut(s)	85, 148, 240, 339, 360, 386
BstUI	CGCG	2 cut(s)	396, 440
BstV1I	GCAGC	1 cut(s)	388
Bsu15I	ATCGAT	1 cut(s)	434
BsuRI	GGCC	4 cut(s)	26, 41, 219, 357
BsuTUI	ATCGAT	1 cut(s)	434
BtgI	CCRYGG	2 cut(s)	121, 271
BtsIMutI	CAGTG	1 cut(s)	316
BtuMI	TCGCGA	1 cut(s)	440
Cac8I	GCNNGC	1 cut(s)	43
Cfr13I	GGNCC	3 cut(s)	25, 183, 244
ClaI	ATCGAT	1 cut(s)	434
CseI	GACGC	2 cut(s)	391, 416
CsiI	ACCWGGT	1 cut(s)	339
Csp6I	GTAC	5 cut(s)	254, 344, 428, 472, 510
CviAII	CATG	2 cut(s)	272, 475
CviJI	RGCY	9 cut(s)	26, 31, 41, 159, 174, 206, 219, 357, 515
CviKI_1	RGCY	9 cut(s)	26, 31, 41, 159, 174, 206, 219, 357, 515
CviQI	GTAC	5 cut(s)	254, 344, 428, 472, 510
DdeI	CTNAG	1 cut(s)	540
DpnI	GATC	5 cut(s)	135, 282, 366, 433, 437
DpnII	GATC	5 cut(s)	133, 280, 364, 431, 435
DraIII	CACNNNGTG	1 cut(s)	398
EciI	GGCGGA	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	271
Eco147I	AGGCCT	1 cut(s)	41
Eco47I	GGWCC	2 cut(s)	183, 244
Eco57I	CTGAAG	1 cut(s)	117
Eco72I	CACGTG	1 cut(s)	425
EcoO109I	RGGNCCY	1 cut(s)	183
EcoRII	CCWGG	3 cut(s)	85, 339, 386
EcoT14I	CCWWGG	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	2 cut(s)	275, 478
FaiI	YATR	5 cut(s)	273, 476, 491, 493, 524
FaqI	GGGAC	2 cut(s)	132, 169
FatI	CATG	2 cut(s)	271, 474
FauI	CCCGC	2 cut(s)	146, 194
FauNDI	CATATG	1 cut(s)	491
FbaI	TGATCA	1 cut(s)	280
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	5 cut(s)	24, 127, 160, 358, 377
Fsp4HI	GCNGC	5 cut(s)	24, 127, 160, 358, 377
GluI	GCNGC	5 cut(s)	24, 127, 160, 358, 377
GsaI	CCCAGC	1 cut(s)	31
HaeIII	GGCC	4 cut(s)	26, 41, 219, 357
HapII	CCGG	4 cut(s)	150, 177, 242, 361
HgaI	GACGC	2 cut(s)	391, 416
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	2 cut(s)	275, 478
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	2 cut(s)	369, 485
HpaII	CCGG	4 cut(s)	150, 177, 242, 361
HphI	GGTGA	5 cut(s)	278, 290, 329, 428, 457
Hpy166II	GTNNAC	3 cut(s)	316, 406, 428
Hpy188I	TCNGA	1 cut(s)	457
Hpy188III	TCNNGA	1 cut(s)	439
Hpy8I	GTNNAC	3 cut(s)	316, 406, 428
Hpy99I	CGWCG	4 cut(s)	118, 134, 407, 410
HpyAV	CCTTC	6 cut(s)	92, 230, 302, 317, 347, 436
HpyCH4III	ACNGT	2 cut(s)	146, 320
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	1 cut(s)	226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpyF3I	CTNAG	1 cut(s)	540
HpySE526I	ACGT	1 cut(s)	424
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	2 cut(s)	275, 478
KflI	GGGWCCC	1 cut(s)	183
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	5 cut(s)	133, 280, 364, 431, 435
LmnI	GCTCC	3 cut(s)	50, 156, 179
Lsp1109I	GCAGC	1 cut(s)	388
MabI	ACCWGGT	1 cut(s)	339
MaeII	ACGT	1 cut(s)	424
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	5 cut(s)	135, 282, 366, 433, 437
MbiI	CCGCTC	1 cut(s)	189
MboI	GATC	5 cut(s)	133, 280, 364, 431, 435
MboII	GAAGA	1 cut(s)	362
MluCI	AATT	2 cut(s)	517, 545
MlyI	GAGTC	2 cut(s)	378, 494
MmeI	TCCRAC	2 cut(s)	462, 480
MnlI	CCTC	2 cut(s)	316, 412
MseI	TTAA	2 cut(s)	15, 531
MslI	CAYNNNNRTG	1 cut(s)	276
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	4 cut(s)	150, 177, 242, 361
MspR9I	CCNGG	6 cut(s)	87, 150, 242, 341, 362, 388
MvaI	CCWGG	3 cut(s)	87, 341, 388
MvnI	CGCG	2 cut(s)	396, 440
MwoI	GCNNNNNNNGC	1 cut(s)	159
NciI	CCSGG	3 cut(s)	150, 242, 362
NcoI	CCATGG	1 cut(s)	271
NdeI	CATATG	1 cut(s)	491
NdeII	GATC	5 cut(s)	133, 280, 364, 431, 435
NlaIII	CATG	2 cut(s)	275, 478
NlaIV	GGNNCC	4 cut(s)	158, 184, 185, 246
NmuCI	GTSAC	1 cut(s)	335
NruI	TCGCGA	1 cut(s)	440
NspI	RCATGY	1 cut(s)	478
PceI	AGGCCT	1 cut(s)	41
PfoI	TCCNGGA	1 cut(s)	386
PkrI	GCNGC	5 cut(s)	25, 128, 161, 359, 378
Ple19I	CGATCG	2 cut(s)	434, 438
PleI	GAGTC	2 cut(s)	377, 493
PmaCI	CACGTG	1 cut(s)	425
PmlI	CACGTG	1 cut(s)	425
PpsI	GAGTC	2 cut(s)	377, 493
Ppu21I	YACGTR	1 cut(s)	425
PpuMI	RGGWCCY	1 cut(s)	183
Psp5II	RGGWCCY	1 cut(s)	183
Psp6I	CCWGG	3 cut(s)	85, 339, 386
PspCI	CACGTG	1 cut(s)	425
PspFI	CCCAGC	1 cut(s)	27
PspGI	CCWGG	3 cut(s)	85, 339, 386
PspN4I	GGNNCC	4 cut(s)	158, 184, 185, 246
PspPI	GGNCC	3 cut(s)	25, 183, 244
PspPPI	RGGWCCY	1 cut(s)	183
PvuI	CGATCG	2 cut(s)	434, 438
RruI	TCGCGA	1 cut(s)	440
RsaI	GTAC	5 cut(s)	255, 345, 429, 473, 511
RsaNI	GTAC	5 cut(s)	254, 344, 428, 472, 510
RseI	CAYNNNNRTG	1 cut(s)	276
SalI	GTCGAC	1 cut(s)	404
SaqAI	TTAA	2 cut(s)	15, 531
SatI	GCNGC	5 cut(s)	24, 127, 160, 358, 377
Sau3AI	GATC	5 cut(s)	133, 280, 364, 431, 435
Sau96I	GGNCC	3 cut(s)	25, 183, 244
SchI	GAGTC	2 cut(s)	378, 494
ScrFI	CCNGG	6 cut(s)	87, 150, 242, 341, 362, 388
SetI	ASST	9 cut(s)	88, 176, 214, 309, 327, 342, 427, 447, 537
SexAI	ACCWGGT	1 cut(s)	339
SgrDI	CGTCGACG	1 cut(s)	404
SinI	GGWCC	2 cut(s)	183, 244
SmiMI	CAYNNNNRTG	1 cut(s)	276
Sse9I	AATT	2 cut(s)	517, 545
SseBI	AGGCCT	1 cut(s)	41
StuI	AGGCCT	1 cut(s)	41
StyD4I	CCNGG	6 cut(s)	85, 148, 240, 339, 360, 386
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	2 cut(s)	146, 320
TaiI	ACGT	1 cut(s)	427
TaqI	TCGA	4 cut(s)	310, 367, 405, 434
TasI	AATT	2 cut(s)	517, 545
TatI	WGTACW	2 cut(s)	253, 471
TauI	GCSGC	4 cut(s)	26, 129, 162, 360
Tru1I	TTAA	2 cut(s)	15, 531
Tru9I	TTAA	2 cut(s)	15, 531
TscAI	CASTG	1 cut(s)	323
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	1 cut(s)	376
Tsp45I	GTSAC	1 cut(s)	335
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	1 cut(s)	323
VpaK11BI	GGWCC	2 cut(s)	183, 244
XceI	RCATGY	1 cut(s)	478
XmiI	GTMKAC	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.