pycom15g21150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
15138585 .. 15139000
416 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 330 bp
ATGGAGGAGAGGGAGTGGCAACTTCAGCGGAAACGAGAGGAGGAGCAGCAGCATAGAATGGAAGAGCGAGAACAGGAGGATACGGCGTCGTTGGATGGGTCTGGGGTGTTAGAGATTCAAGGGACGGAGTCCGGTTGTGGGTTATTGGTGGATGAGCTTCTTTTGCAGGACGATGCAAACGAGCAAATGGGCGTTCTCGAAAGGGTCGGAAATGAGGGAATGGGAGAACTGAAAGAGAGCGAGTCTGACTGCCTGGAAACCCGGGGAGGTGTACCGGGTCTTCAACACGGTGGCGACCCGGCAAACGACGCCTTAGTACAGTTTCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.13

Weight (kDa)

4.15

Isoelectric Point (pI)

55.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 28
AcuI CTGAAG 1 cut(s) 8
AcyI GRCGYC 2 cut(s) 86, 309
AfaI GTAC 2 cut(s) 273, 318
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 2 cut(s) 119, 284
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
Ama87I CYCGRG 1 cut(s) 261
ApeKI GCWGC 2 cut(s) 46, 49
AsuC2I CCSGG 4 cut(s) 262, 263, 276, 299
AvaI CYCGRG 1 cut(s) 261
BarI GAAGNNNNNNTAC 2 cut(s) 264, 296
BbsI GAAGAC 1 cut(s) 272
BbvI GCAGC 2 cut(s) 58, 61
BccI CCATC 1 cut(s) 89
BceAI ACGGC 1 cut(s) 99
BciT130I CCWGG 1 cut(s) 254
BciVI GTATCC 1 cut(s) 73
BcnI CCSGG 4 cut(s) 262, 263, 276, 299
BfuI GTATCC 1 cut(s) 73
BisI GCNGC 2 cut(s) 47, 50
BlsI GCNGC 2 cut(s) 48, 51
Bme1390I CCNGG 5 cut(s) 254, 262, 263, 276, 299
BmeT110I CYCGRG 1 cut(s) 261
BmrFI CCNGG 5 cut(s) 254, 262, 263, 276, 299
BmsI GCATC 1 cut(s) 163
BpiI GAAGAC 1 cut(s) 272
BpuMI CCSGG 4 cut(s) 262, 263, 276, 299
BsaHI GRCGYC 2 cut(s) 86, 309
BsaJI CCNNGG 2 cut(s) 261, 262
BsaWI WCCGGW 1 cut(s) 131
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 138
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 2 cut(s) 261, 262
BseGI GGATG 2 cut(s) 100, 157
BseLI CCNNNNNNNGG 1 cut(s) 138
BseRI GAGGAG 3 cut(s) 20, 53, 56
BseXI GCAGC 2 cut(s) 58, 61
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 4 cut(s) 132, 262, 275, 299
BslFI GGGAC 1 cut(s) 136
BslI CCNNNNNNNGG 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 136
BsoBI CYCGRG 1 cut(s) 261
BspACI CCGC 1 cut(s) 28
BspQI GCTCTTC 1 cut(s) 57
BssECI CCNNGG 2 cut(s) 261, 262
BssNI GRCGYC 2 cut(s) 86, 309
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 2 cut(s) 290, 321
Bst6I CTCTTC 1 cut(s) 57
BstACI GRCGYC 2 cut(s) 86, 309
BstDEI CTNAG 1 cut(s) 313
BstF5I GGATG 2 cut(s) 100, 157
BstMWI GCNNNNNNNGC 3 cut(s) 25, 163, 308
BstNI CCWGG 1 cut(s) 254
BstSCI CCNGG 5 cut(s) 252, 260, 261, 274, 297
BstV1I GCAGC 2 cut(s) 58, 61
BstV2I GAAGAC 1 cut(s) 272
BsuI GTATCC 1 cut(s) 73
BtsCI GGATG 2 cut(s) 100, 157
Cfr9I CCCGGG 1 cut(s) 261
CseI GACGC 2 cut(s) 75, 317
Csp6I GTAC 2 cut(s) 272, 317
CviJI RGCY 1 cut(s) 157
CviKI_1 RGCY 1 cut(s) 157
CviQI GTAC 2 cut(s) 272, 317
DdeI CTNAG 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 8
Eco88I CYCGRG 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 252
FaiI YATR 1 cut(s) 54
FaqI GGGAC 1 cut(s) 136
Fnu4HI GCNGC 2 cut(s) 47, 50
FokI GGATG 2 cut(s) 107, 164
Fsp4HI GCNGC 2 cut(s) 47, 50
GluI GCNGC 2 cut(s) 47, 50
HapII CCGG 4 cut(s) 132, 262, 275, 299
HgaI GACGC 2 cut(s) 75, 317
Hin1I GRCGYC 2 cut(s) 86, 309
HinfI GANTC 3 cut(s) 115, 128, 242
HpaII CCGG 4 cut(s) 132, 262, 275, 299
Hpy166II GTNNAC 1 cut(s) 272
Hpy188I TCNGA 2 cut(s) 209, 247
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 1 cut(s) 272
Hpy99I CGWCG 2 cut(s) 91, 311
HpyCH4III ACNGT 2 cut(s) 290, 321
HpyCH4V TGCA 2 cut(s) 166, 176
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 163, 308
HpyF3I CTNAG 1 cut(s) 313
Hsp92I GRCGYC 2 cut(s) 86, 309
LguI GCTCTTC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 9 cut(s) 59, 87, 145, 152, 239, 266, 275, 288, 312
Lsp1109I GCAGC 2 cut(s) 58, 61
LweI GCATC 1 cut(s) 163
MboII GAAGA 2 cut(s) 74, 272
MlyI GAGTC 2 cut(s) 137, 251
MmeI TCCRAC 2 cut(s) 72, 187
MnlI CCTC 6 cut(s) 3, 31, 34, 70, 208, 260
MspA1I CMGCKG 1 cut(s) 28
MspI CCGG 4 cut(s) 132, 262, 275, 299
MspR9I CCNGG 5 cut(s) 254, 262, 263, 276, 299
MvaI CCWGG 1 cut(s) 254
MwoI GCNNNNNNNGC 3 cut(s) 25, 163, 308
NciI CCSGG 4 cut(s) 262, 263, 276, 299
PciSI GCTCTTC 1 cut(s) 57
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PfeI GAWTC 1 cut(s) 115
PflFI GACNNNGTC 1 cut(s) 127
PkrI GCNGC 2 cut(s) 48, 51
PleI GAGTC 2 cut(s) 136, 250
PpsI GAGTC 2 cut(s) 136, 250
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
PsyI GACNNNGTC 1 cut(s) 127
RsaI GTAC 2 cut(s) 273, 318
RsaNI GTAC 2 cut(s) 272, 317
SapI GCTCTTC 1 cut(s) 57
SatI GCNGC 2 cut(s) 47, 50
SchI GAGTC 2 cut(s) 137, 251
ScrFI CCNGG 5 cut(s) 254, 262, 263, 276, 299
SetI ASST 2 cut(s) 159, 271
SfaNI GCATC 1 cut(s) 163
SmaI CCCGGG 1 cut(s) 263
SsiI CCGC 1 cut(s) 28
StyD4I CCNGG 5 cut(s) 252, 260, 261, 274, 297
TaaI ACNGT 2 cut(s) 290, 321
TaqI TCGA 1 cut(s) 198
TatI WGTACW 1 cut(s) 316
TfiI GAWTC 1 cut(s) 115
TseI GCWGC 2 cut(s) 46, 49
TspGWI ACGGA 2 cut(s) 140, 315
TspMI CCCGGG 1 cut(s) 261
Tth111I GACNNNGTC 1 cut(s) 127
XmaI CCCGGG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.