Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

16260781 .. 16261561

Gene Structure 781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGGTTTCATCTATATTAGAATAGATAAGAGTTTGGGTCACACGGGGCGAGGCCGTTTCGTAGAGCGACACTGCTGCTGCAAAAGGAGTTTGCGAGGAGATTGTTGGCTAAAGCCAGACGACTCGGAGTTCAACTGCTTGGCTGTGAATGTGAACCTGGTGGCCGATGTCGAGTTTGTCATGGATGTGAGCAAGAGGGAGTTTGTTCCGCACCCAAAAGTTGATTCCTCTGTTGTTATAATCCGCCCGAAAGCTGAAGTTCCGAATGTTAATCTGGACGAGTGGTGGGCTTTCATAAAAGCTTGTTTCTGTAAGAAGAACAGAACGCTTGGGGCAACATTCAAGCAAAAGAAGGTGATGGAGCTACTGGGGATGTCCAATTTGGCAGGCTCAAATGGTGAAAGAAAGAGTGATGAAGAGGAGTTTTCTCCGTCTTCTTGCTCGCAAATAGGGGCGAGTTCTTTCAAGGAGAAGTTAATTGGGGTTCTGAAATCAGGTAATTTTGAAGACAAGCGGCCTTCAAAGCTGTCGAATGAGGAGTTATTGCATTTACTGGCAATGTTTAATCAAGAGGGAATTTACTTTCATGATCACTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000179 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009116 GO:0009119 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016433 GO:0016740 GO:0016741 GO:0017144 GO:0022613 GO:0031167 GO:0031974 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042278 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046085 GO:0046128 GO:0046483 GO:0055086 GO:0070013 GO:0071704 GO:0071840 GO:0072521 GO:0090304 GO:0140098 GO:0140102 GO:1901135 GO:1901360 GO:1901564 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RrnaAD

Protein Analysis

200

Amino Acids

22.56

Weight (kDa)

8.09

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RrnaAD	PF00398	39 - 121	3e-15	Ribosomal RNA adenine dimethylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	239
AciI	CCGC	3 cut(s)	209, 244, 514
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	576
AcuI	CTGAAG	1 cut(s)	276
AgsI	TTSAA	5 cut(s)	133, 343, 466, 506, 522
AjnI	CCWGG	1 cut(s)	156
AjuI	GAANNNNNNNTTGG	2 cut(s)	208, 240
AluBI	AGCT	4 cut(s)	254, 302, 364, 526
AluI	AGCT	4 cut(s)	254, 302, 364, 526
AoxI	GGCC	3 cut(s)	52, 162, 515
ApeKI	GCWGC	2 cut(s)	75, 78
ApoI	RAATTY	1 cut(s)	576
AsuHPI	GGTGA	2 cut(s)	367, 410
BbsI	GAAGAC	2 cut(s)	426, 513
BbvI	GCAGC	2 cut(s)	62, 65
BccI	CCATC	1 cut(s)	352
BceAI	ACGGC	1 cut(s)	39
BcgI	CGANNNNNNTGC	2 cut(s)	57, 91
BciT130I	CCWGG	1 cut(s)	158
BclI	TGATCA	1 cut(s)	589
BisI	GCNGC	3 cut(s)	76, 79, 515
BlsI	GCNGC	3 cut(s)	77, 80, 516
Bme1390I	CCNGG	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	158
BmrI	ACTGGG	1 cut(s)	377
BmuI	ACTGGG	1 cut(s)	377
BpiI	GAAGAC	2 cut(s)	426, 513
Bse1I	ACTGG	2 cut(s)	372, 558
Bse3DI	GCAATG	1 cut(s)	564
BseBI	CCWGG	1 cut(s)	158
BseGI	GGATG	2 cut(s)	190, 378
BseMI	GCAATG	1 cut(s)	564
BseNI	ACTGG	2 cut(s)	372, 558
BseRI	GAGGAG	3 cut(s)	111, 434, 551
BseXI	GCAGC	2 cut(s)	62, 65
BshFI	GGCC	3 cut(s)	54, 164, 517
BsnI	GGCC	3 cut(s)	54, 164, 517
Bsp143I	GATC	1 cut(s)	589
BspACI	CCGC	3 cut(s)	209, 244, 514
BspANI	GGCC	3 cut(s)	54, 164, 517
BspHI	TCATGA	1 cut(s)	586
BsrDI	GCAATG	1 cut(s)	564
BsrI	ACTGG	2 cut(s)	372, 558
BssMI	GATC	1 cut(s)	589
Bst2UI	CCWGG	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	411
BstC8I	GCNNGC	2 cut(s)	388, 443
BstF5I	GGATG	2 cut(s)	190, 378
BstKTI	GATC	1 cut(s)	592
BstMBI	GATC	1 cut(s)	589
BstMWI	GCNNNNNNNGC	1 cut(s)	523
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	62, 65
BstV2I	GAAGAC	2 cut(s)	426, 513
BsuRI	GGCC	3 cut(s)	54, 164, 517
BtsCI	GGATG	2 cut(s)	190, 378
BtsI	GCAGTG	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	70
Cac8I	GCNNGC	2 cut(s)	388, 443
CciI	TCATGA	1 cut(s)	586
CsiI	ACCWGGT	1 cut(s)	156
CviAII	CATG	2 cut(s)	181, 587
DpnI	GATC	1 cut(s)	591
DpnII	GATC	1 cut(s)	589
EaeI	YGGCCR	1 cut(s)	162
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
EciI	GGCGGA	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	276
EcoRII	CCWGG	1 cut(s)	156
FaeI	CATG	2 cut(s)	184, 590
FaiI	YATR	5 cut(s)	15, 182, 239, 296, 588
FatI	CATG	2 cut(s)	180, 586
FbaI	TGATCA	1 cut(s)	589
Fnu4HI	GCNGC	3 cut(s)	76, 79, 515
FokI	GGATG	2 cut(s)	197, 385
Fsp4HI	GCNGC	3 cut(s)	76, 79, 515
GluI	GCNGC	3 cut(s)	76, 79, 515
HaeIII	GGCC	3 cut(s)	54, 164, 517
Hin1II	CATG	2 cut(s)	184, 590
HindIII	AAGCTT	1 cut(s)	300
HinfI	GANTC	2 cut(s)	122, 224
HphI	GGTGA	2 cut(s)	367, 410
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	3 cut(s)	127, 264, 489
Hpy188III	TCNNGA	3 cut(s)	275, 569, 587
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	2 cut(s)	346, 528
HpyCH4V	TGCA	2 cut(s)	81, 547
HpyF10VI	GCNNNNNNNGC	1 cut(s)	523
Hsp92II	CATG	2 cut(s)	184, 590
Ksp22I	TGATCA	1 cut(s)	589
Kzo9I	GATC	1 cut(s)	589
LmnI	GCTCC	1 cut(s)	361
LpnPI	CCDG	8 cut(s)	129, 143, 170, 260, 353, 372, 480, 539
Lsp1109I	GCAGC	2 cut(s)	62, 65
MabI	ACCWGGT	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	1 cut(s)	591
MboI	GATC	1 cut(s)	589
MboII	GAAGA	4 cut(s)	328, 426, 428, 518
MluCI	AATT	4 cut(s)	379, 477, 499, 576
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	7 cut(s)	44, 89, 189, 238, 412, 529, 565
MseI	TTAA	3 cut(s)	270, 476, 564
MslI	CAYNNNNRTG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	523
NdeII	GATC	1 cut(s)	589
NlaIII	CATG	2 cut(s)	184, 590
NmuCI	GTSAC	1 cut(s)	38
PagI	TCATGA	1 cut(s)	586
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	3 cut(s)	77, 80, 516
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PsiI	TTATAA	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
RseI	CAYNNNNRTG	1 cut(s)	185
SaqAI	TTAA	3 cut(s)	270, 476, 564
SatI	GCNGC	3 cut(s)	76, 79, 515
Sau3AI	GATC	1 cut(s)	589
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	158
SetI	ASST	7 cut(s)	159, 256, 304, 357, 366, 499, 528
SexAI	ACCWGGT	1 cut(s)	156
SmiMI	CAYNNNNRTG	1 cut(s)	185
Sse9I	AATT	4 cut(s)	379, 477, 499, 576
SsiI	CCGC	3 cut(s)	209, 244, 514
StyD4I	CCNGG	1 cut(s)	156
TaqI	TCGA	2 cut(s)	171, 530
TasI	AATT	4 cut(s)	379, 477, 499, 576
TauI	GCSGC	1 cut(s)	517
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	3 cut(s)	270, 476, 564
Tru9I	TTAA	3 cut(s)	270, 476, 564
TscAI	CASTG	1 cut(s)	77
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	2 cut(s)	75, 78
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	3 cut(s)	283, 429, 575
TspGWI	ACGGA	1 cut(s)	420
TspRI	CASTG	1 cut(s)	77
XapI	RAATTY	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.