Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

17287989 .. 17292552

Gene Structure 4564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCAAATAGCAGCAGAAGTAGTACTGGGGGTGTCACCAATGGAGGGAGAGGAAAGCGTGTTCATCGACCTGTACACGAAAGACCCTGCGGAAAACACAGGAAGCGGCGGCGATTGGAAGGGAGCTGCGGCGGGGAAGGCCAGCTCCGCCTTCAAATTCGACCCCAGCATTCTGATTGACCCGAGCTGCATCAAGATTGGTTCTGTGCTCGGAGAAGGGCGCGGAGCTATTGTTTATGAGGGATTGTGGGTCCCGTTAACACTTTTCTTCTCTGTATCTTTCGTAGGCGCATGCTTTGAACCTTCGATGATAATTCTTACTGAGCTTCTGAGAGGAGGTAACCTCCAGAAGTACCTATGGGAAAGGCGCCCCAGAACACCTGATCTCAAGTGTTCAATAAGTTTTGCAATGGATGTCTGTCGAGCTATGGAATACATGCATGCAAATGGCATCATCCACCGTGACCTGAAACCAGAGCTGGATGACATTCCTCAAGATCTCATTCCACTCCTGGAGTCCTGTTGGGCCGACGACCCAAAGATCCGACCTGAGTTCATGGAGATCACAAGCCATCTTTCCAACTACCACAAACAACTGTGTGCGGCTGAGTTGGAACCTCCAGCAGTCAATGTGCCGGAATCTGAACCTCAAGACAGCAACTTGAAGGAAGAAGAGCCTCCCAGAGTCCATGCGAATGACAAGTCCGAAGAGAAAAAGAAAGTTAAAAGGCGAAAGAAGTGCAGATCAAGTTTCTTCTTCTTTTGCTGTCGACCTGTAGCAGTGCATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04064 ko04140 ko04152 ko04214 ko04310 ko04380 ko04520 ko04620 ko04621 ko04622 ko04624 ko04657 ko04660 ko04668 ko05140 ko05145 ko05162 ko05168 ko05169 ko05418 map04010 map04013 map04064 map04140 map04152 map04214 map04310 map04380 map04520 map04620 map04621 map04622 map04624 map04657 map04660 map04668 map05140 map05145 map05162 map05168 map05169 map05418

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

264

Amino Acids

29.42

Weight (kDa)

5.31

Isoelectric Point (pI)

54.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	92 - 156	1.2e-11	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	101 - 159	1.1e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	366
AccI	GTMKAC	1 cut(s)	769
AccII	CGCG	1 cut(s)	222
AciI	CCGC	8 cut(s)	89, 105, 108, 128, 131, 147, 222, 602
AclWI	GGATC	1 cut(s)	535
AcsI	RAATTY	1 cut(s)	155
AcyI	GRCGYC	1 cut(s)	367
AfaI	GTAC	3 cut(s)	24, 74, 353
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	4 cut(s)	154, 299, 396, 664
AjnI	CCWGG	1 cut(s)	510
AloI	GAACNNNNNNTCC	2 cut(s)	44, 76
AluBI	AGCT	7 cut(s)	125, 144, 186, 227, 325, 425, 478
AluI	AGCT	7 cut(s)	125, 144, 186, 227, 325, 425, 478
Alw21I	GWGCWC	1 cut(s)	210
AlwI	GGATC	1 cut(s)	535
Ama87I	CYCGRG	1 cut(s)	181
AoxI	GGCC	2 cut(s)	138, 525
ApeKI	GCWGC	3 cut(s)	11, 125, 186
ApoI	RAATTY	1 cut(s)	155
ArsI	GACNNNNNNTTYG	2 cut(s)	686, 718
AspLEI	GCGC	3 cut(s)	222, 290, 369
AspS9I	GGNCC	2 cut(s)	250, 525
AsuHPI	GGTGA	1 cut(s)	27
AvaI	CYCGRG	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	250
BanI	GGYRCC	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	3 cut(s)	23, 112, 173
BccI	CCATC	1 cut(s)	579
BcgI	CGANNNNNNTGC	2 cut(s)	720, 754
BciT130I	CCWGG	1 cut(s)	512
BfmI	CTRYAG	1 cut(s)	774
BfoI	RGCGCY	1 cut(s)	370
BglII	AGATCT	1 cut(s)	496
BisI	GCNGC	7 cut(s)	12, 106, 109, 126, 129, 187, 603
BlsI	GCNGC	7 cut(s)	13, 107, 110, 127, 130, 188, 604
BmcAI	AGTACT	1 cut(s)	24
Bme1390I	CCNGG	1 cut(s)	512
Bme18I	GGWCC	1 cut(s)	250
BmeT110I	CYCGRG	1 cut(s)	181
BmgT120I	GGNCC	2 cut(s)	250, 525
BmiI	GGNNCC	4 cut(s)	251, 252, 368, 615
BmrFI	CCNGG	1 cut(s)	512
BmrI	ACTGGG	1 cut(s)	35
BmsI	GCATC	2 cut(s)	198, 459
BmuI	ACTGGG	1 cut(s)	35
BplI	GAGNNNNNCTC	2 cut(s)	327, 359
BpmI	CTGGAG	3 cut(s)	329, 533, 603
BpuEI	CTTGAG	3 cut(s)	371, 477, 633
BsaHI	GRCGYC	1 cut(s)	367
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	30
Bse3DI	GCAATG	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	512
BseGI	GGATG	3 cut(s)	418, 453, 487
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	4 cut(s)	312, 320, 540, 597
BseNI	ACTGG	1 cut(s)	30
BseRI	GAGGAG	1 cut(s)	348
BseXI	GCAGC	3 cut(s)	23, 112, 173
BseYI	CCCAGC	1 cut(s)	164
BsgI	GTGCAG	1 cut(s)	760
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	2 cut(s)	140, 527
BshNI	GGYRCC	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	210
BsiHKCI	CYCGRG	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	635
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	236
BsmI	GAATGC	1 cut(s)	168
BsnI	GGCC	2 cut(s)	140, 527
BsoBI	CYCGRG	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp1407I	TGTACA	1 cut(s)	72
Bsp143I	GATC	5 cut(s)	382, 496, 540, 561, 743
BspACI	CCGC	8 cut(s)	89, 105, 108, 128, 131, 147, 222, 602
BspANI	GGCC	2 cut(s)	140, 527
BspCNI	CTCAG	4 cut(s)	313, 321, 541, 598
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	4 cut(s)	251, 252, 368, 615
BspPI	GGATC	1 cut(s)	535
BspQI	GCTCTTC	1 cut(s)	666
BspT107I	GGYRCC	1 cut(s)	366
BsrDI	GCAATG	1 cut(s)	414
BsrGI	TGTACA	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	30
BssMI	GATC	5 cut(s)	382, 496, 540, 561, 743
BssNI	GRCGYC	1 cut(s)	367
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	2 cut(s)	461, 597
Bst6I	CTCTTC	2 cut(s)	666, 702
BstACI	GRCGYC	1 cut(s)	367
BstAUI	TGTACA	1 cut(s)	72
BstC8I	GCNNGC	3 cut(s)	142, 292, 441
BstDEI	CTNAG	4 cut(s)	321, 329, 549, 606
BstEII	GGTNACC	1 cut(s)	338
BstF5I	GGATG	3 cut(s)	418, 453, 487
BstFNI	CGCG	1 cut(s)	222
BstH2I	RGCGCY	1 cut(s)	370
BstHHI	GCGC	3 cut(s)	222, 290, 369
BstKTI	GATC	5 cut(s)	385, 499, 543, 564, 746
BstMBI	GATC	5 cut(s)	382, 496, 540, 561, 743
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 146
BstNI	CCWGG	1 cut(s)	512
BstNSI	RCATGY	3 cut(s)	294, 439, 443
BstPI	GGTNACC	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	510
BstSFI	CTRYAG	1 cut(s)	774
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	3 cut(s)	23, 112, 173
BstX2I	RGATCY	2 cut(s)	496, 540
BstYI	RGATCY	2 cut(s)	496, 540
BsuRI	GGCC	2 cut(s)	140, 527
BtsCI	GGATG	3 cut(s)	418, 453, 487
BtsI	GCAGTG	1 cut(s)	786
BtsIMutI	CAGTG	1 cut(s)	786
Cac8I	GCNNGC	3 cut(s)	142, 292, 441
CfoI	GCGC	3 cut(s)	222, 290, 369
Cfr13I	GGNCC	2 cut(s)	250, 525
Csp6I	GTAC	3 cut(s)	23, 73, 352
CviAII	CATG	6 cut(s)	291, 436, 440, 556, 689, 785
CviQI	GTAC	3 cut(s)	23, 73, 352
DdeI	CTNAG	4 cut(s)	321, 329, 549, 606
DinI	GGCGCC	1 cut(s)	368
DpnI	GATC	5 cut(s)	384, 498, 542, 563, 745
DpnII	GATC	5 cut(s)	382, 496, 540, 561, 743
Eam1104I	CTCTTC	2 cut(s)	666, 702
EarI	CTCTTC	2 cut(s)	666, 702
EciI	GGCGGA	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	250
Eco88I	CYCGRG	1 cut(s)	181
Eco91I	GGTNACC	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	250
EcoO65I	GGTNACC	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	510
EcoT22I	ATGCAT	1 cut(s)	441
EgeI	GGCGCC	1 cut(s)	368
EheI	GGCGCC	1 cut(s)	368
FaeI	CATG	6 cut(s)	294, 439, 443, 559, 692, 788
FaiI	YATR	9 cut(s)	237, 292, 358, 428, 437, 441, 557, 690, 786
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	6 cut(s)	290, 435, 439, 555, 688, 784
FauI	CCCGC	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	769
Fnu4HI	GCNGC	7 cut(s)	12, 106, 109, 126, 129, 187, 603
FokI	GGATG	3 cut(s)	425, 440, 494
Fsp4HI	GCNGC	7 cut(s)	12, 106, 109, 126, 129, 187, 603
GlaI	GCGC	3 cut(s)	221, 289, 368
GluI	GCNGC	7 cut(s)	12, 106, 109, 126, 129, 187, 603
GsaI	CCCAGC	1 cut(s)	168
GsuI	CTGGAG	3 cut(s)	329, 533, 603
HaeII	RGCGCY	1 cut(s)	370
HaeIII	GGCC	2 cut(s)	140, 527
HapII	CCGG	1 cut(s)	635
HhaI	GCGC	3 cut(s)	222, 290, 369
Hin1I	GRCGYC	1 cut(s)	367
Hin1II	CATG	6 cut(s)	294, 439, 443, 559, 692, 788
Hin6I	GCGC	3 cut(s)	220, 288, 367
HinP1I	GCGC	3 cut(s)	220, 288, 367
HincII	GTYRAC	2 cut(s)	258, 770
HindII	GTYRAC	2 cut(s)	258, 770
HinfI	GANTC	3 cut(s)	515, 638, 684
HpaI	GTTAAC	1 cut(s)	258
HpaII	CCGG	1 cut(s)	635
HphI	GGTGA	1 cut(s)	27
Hpy166II	GTNNAC	3 cut(s)	75, 258, 770
Hpy188I	TCNGA	6 cut(s)	174, 212, 330, 545, 643, 706
Hpy188III	TCNNGA	4 cut(s)	193, 346, 494, 650
Hpy8I	GTNNAC	3 cut(s)	75, 258, 770
Hpy99I	CGWCG	1 cut(s)	533
HpyAV	CCTTC	6 cut(s)	112, 130, 160, 209, 312, 658
HpyCH4III	ACNGT	2 cut(s)	461, 597
HpyCH4V	TGCA	7 cut(s)	4, 189, 407, 439, 443, 741, 784
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 146
HpyF3I	CTNAG	4 cut(s)	321, 329, 549, 606
Hsp92I	GRCGYC	1 cut(s)	367
Hsp92II	CATG	6 cut(s)	294, 439, 443, 559, 692, 788
HspAI	GCGC	3 cut(s)	220, 288, 367
KasI	GGCGCC	1 cut(s)	366
KflI	GGGWCCC	1 cut(s)	250
KspAI	GTTAAC	1 cut(s)	258
Kzo9I	GATC	5 cut(s)	382, 496, 540, 561, 743
LguI	GCTCTTC	1 cut(s)	666
LmnI	GCTCC	3 cut(s)	122, 149, 224
Lsp1109I	GCAGC	3 cut(s)	23, 112, 173
LweI	GCATC	2 cut(s)	198, 459
MaeIII	GTNAC	3 cut(s)	33, 338, 461
MalI	GATC	5 cut(s)	384, 498, 542, 563, 745
MboI	GATC	5 cut(s)	382, 496, 540, 561, 743
MboII	GAAGA	6 cut(s)	259, 680, 683, 719, 745, 748
MflI	RGATCY	2 cut(s)	496, 540
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	2 cut(s)	155, 312
Mly113I	GGCGCC	1 cut(s)	367
MlyI	GAGTC	2 cut(s)	524, 693
MmeI	TCCRAC	3 cut(s)	568, 591, 603
Mph1103I	ATGCAT	1 cut(s)	441
MseI	TTAA	2 cut(s)	257, 723
MslI	CAYNNNNRTG	2 cut(s)	444, 693
MspI	CCGG	1 cut(s)	635
MspR9I	CCNGG	1 cut(s)	512
Mva1269I	GAATGC	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	512
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	137, 146
NarI	GGCGCC	1 cut(s)	367
NdeII	GATC	5 cut(s)	382, 496, 540, 561, 743
NlaIII	CATG	6 cut(s)	294, 439, 443, 559, 692, 788
NlaIV	GGNNCC	4 cut(s)	251, 252, 368, 615
NmuCI	GTSAC	2 cut(s)	33, 461
NsiI	ATGCAT	1 cut(s)	441
NspI	RCATGY	3 cut(s)	294, 439, 443
PaeI	GCATGC	2 cut(s)	294, 443
PciSI	GCTCTTC	1 cut(s)	666
PctI	GAATGC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	638
PfoI	TCCNGGA	1 cut(s)	510
PkrI	GCNGC	7 cut(s)	13, 107, 110, 127, 130, 188, 604
PleI	GAGTC	2 cut(s)	523, 692
PluTI	GGCGCC	1 cut(s)	370
PpsI	GAGTC	2 cut(s)	523, 692
PpuMI	RGGWCCY	1 cut(s)	250
Psp5II	RGGWCCY	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	510
PspEI	GGTNACC	1 cut(s)	338
PspFI	CCCAGC	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	510
PspN4I	GGNNCC	4 cut(s)	251, 252, 368, 615
PspPI	GGNCC	2 cut(s)	250, 525
PspPPI	RGGWCCY	1 cut(s)	250
PsuI	RGATCY	2 cut(s)	496, 540
RsaI	GTAC	3 cut(s)	24, 74, 353
RsaNI	GTAC	3 cut(s)	23, 73, 352
RseI	CAYNNNNRTG	2 cut(s)	444, 693
SalI	GTCGAC	1 cut(s)	768
SapI	GCTCTTC	1 cut(s)	666
SaqAI	TTAA	2 cut(s)	257, 723
SatI	GCNGC	7 cut(s)	12, 106, 109, 126, 129, 187, 603
Sau3AI	GATC	5 cut(s)	382, 496, 540, 561, 743
Sau96I	GGNCC	2 cut(s)	250, 525
ScaI	AGTACT	1 cut(s)	24
SchI	GAGTC	2 cut(s)	524, 693
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	1 cut(s)	210
SfaNI	GCATC	2 cut(s)	198, 459
SfcI	CTRYAG	1 cut(s)	774
SfoI	GGCGCC	1 cut(s)	368
SinI	GGWCC	1 cut(s)	250
SmiMI	CAYNNNNRTG	2 cut(s)	444, 693
SmlI	CTYRAG	3 cut(s)	386, 492, 648
SmoI	CTYRAG	3 cut(s)	386, 492, 648
SphI	GCATGC	2 cut(s)	294, 443
Sse9I	AATT	2 cut(s)	155, 312
SsiI	CCGC	8 cut(s)	89, 105, 108, 128, 131, 147, 222, 602
SspDI	GGCGCC	1 cut(s)	366
StyD4I	CCNGG	1 cut(s)	510
TaaI	ACNGT	2 cut(s)	461, 597
TaqI	TCGA	5 cut(s)	66, 159, 305, 421, 769
TasI	AATT	2 cut(s)	155, 312
TatI	WGTACW	2 cut(s)	22, 72
TauI	GCSGC	4 cut(s)	108, 111, 131, 605
TfiI	GAWTC	1 cut(s)	638
Tru1I	TTAA	2 cut(s)	257, 723
Tru9I	TTAA	2 cut(s)	257, 723
TscAI	CASTG	1 cut(s)	786
TseFI	GTSAC	2 cut(s)	33, 461
TseI	GCWGC	3 cut(s)	11, 125, 186
Tsp45I	GTSAC	2 cut(s)	33, 461
TspDTI	ATGAA	2 cut(s)	52, 544
TspRI	CASTG	1 cut(s)	786
VpaK11BI	GGWCC	1 cut(s)	250
XapI	RAATTY	1 cut(s)	155
XceI	RCATGY	3 cut(s)	294, 439, 443
XmiI	GTMKAC	1 cut(s)	769
ZrmI	AGTACT	1 cut(s)	24
Zsp2I	ATGCAT	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.