Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

17572184 .. 17573032

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAATGGAGATGTGTCCAAAGAGATAAATTTACTACAAAAGCAATCATGGGAAGTTCCTGAATTGGACACAAAAAATACAGATTCTGCTGGATGTGGCCTCAGGGCTTCACTATCTCCACAGCTTCGCCACTCCTCCCCCATGGCCAAGATCGCAGACTTCAGTCTAGCAAGGTCAACAGAAGCACTGGAAGCTCCTGAGTACTTGGAAAATGGCTTGATATCCACAAAGCTTGATGTCTACGCATTTGGCGCTCTCAGGCTGGAAGTACTCACTGGAAAAGAGGTCGCTATGTTTTACGACAAGAATATTTGCTTGTCTGATGTAGTATACTCTGTGCTTAACAACGAAGATGGAGGGCAGAGTTTGAAGGAGTTCATGGATCCTTCTATGCAAAAGAGTTATCCTCCAGAACTTGCTCTTGCAAAAGAGTTATCCTTTCATGCATTCGGTTTTTTTTTTTTTTTGAAAGGATCAAACTGTTCATGTGAACAGTTACAACCGTTCTTGAAGATAAATGTGAACGGCTTTAATTGCTTCATTACGCCATCAGAAACCGAATATCAATTCCATTGCTTCTTTTTCCATACTTCACAGAGAAACACCACAACCAATTCACCAAGAATCCAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0002237 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010033 GO:0010154 GO:0010200 GO:0010243 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035690 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046677 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0070887 GO:0071216 GO:0071219 GO:0071310 GO:0071323 GO:0071417 GO:0071495 GO:0071704 GO:0071944 GO:0097367 GO:0098542 GO:0140096 GO:1901564 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

212

Amino Acids

23.7

Weight (kDa)

5.13

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	240, 330
AclWI	GGATC	3 cut(s)	377, 390, 481
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	28
AcuI	CTGAAG	1 cut(s)	145
AfaI	GTAC	2 cut(s)	203, 270
AgsI	TTSAA	3 cut(s)	370, 469, 511
AluBI	AGCT	3 cut(s)	124, 194, 232
AluI	AGCT	3 cut(s)	124, 194, 232
AlwI	GGATC	3 cut(s)	377, 390, 481
AlwNI	CAGNNNCTG	1 cut(s)	86
AoxI	GGCC	2 cut(s)	97, 144
ApoI	RAATTY	1 cut(s)	28
Asp700I	GAANNNNTTC	1 cut(s)	374
AspLEI	GCGC	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	609
AxyI	CCTNAGG	1 cut(s)	101
BalI	TGGCCA	1 cut(s)	146
BamHI	GGATCC	1 cut(s)	382
BccI	CCATC	2 cut(s)	347, 556
BceAI	ACGGC	1 cut(s)	541
BfaI	CTAG	1 cut(s)	167
BfoI	RGCGCY	1 cut(s)	255
BmcAI	AGTACT	2 cut(s)	203, 270
BmiI	GGNNCC	1 cut(s)	384
BoxI	GACNNNNGTC	1 cut(s)	162
BplI	GAGNNNNNCTC	2 cut(s)	391, 423
BpmI	CTGGAG	1 cut(s)	393
BsaJI	CCNNGG	1 cut(s)	141
Bse1I	ACTGG	2 cut(s)	192, 280
Bse21I	CCTNAGG	1 cut(s)	101
Bse3DI	GCAATG	1 cut(s)	571
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	1 cut(s)	98
BseMI	GCAATG	1 cut(s)	571
BseMII	CTCAG	3 cut(s)	115, 189, 271
BseNI	ACTGG	2 cut(s)	192, 280
BseRI	GAGGAG	1 cut(s)	124
BshFI	GGCC	2 cut(s)	99, 146
BsmI	GAATGC	1 cut(s)	446
BsnI	GGCC	2 cut(s)	99, 146
Bsp143I	GATC	3 cut(s)	150, 382, 473
Bsp19I	CCATGG	1 cut(s)	141
BspANI	GGCC	2 cut(s)	99, 146
BspCNI	CTCAG	3 cut(s)	114, 190, 270
BspLI	GGNNCC	1 cut(s)	384
BspPI	GGATC	3 cut(s)	377, 390, 481
BsrDI	GCAATG	1 cut(s)	571
BsrI	ACTGG	2 cut(s)	192, 280
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	3 cut(s)	150, 382, 473
BssNAI	GTATAC	1 cut(s)	331
BssT1I	CCWWGG	1 cut(s)	141
Bst1107I	GTATAC	1 cut(s)	331
Bst4CI	ACNGT	3 cut(s)	482, 495, 504
BstDEI	CTNAG	3 cut(s)	101, 198, 257
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	98
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	3 cut(s)	153, 385, 476
BstMBI	GATC	3 cut(s)	150, 382, 473
BstMWI	GCNNNNNNNGC	4 cut(s)	152, 191, 251, 534
BstPAI	GACNNNNGTC	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BstZ17I	GTATAC	1 cut(s)	331
Bsu36I	CCTNAGG	1 cut(s)	101
BsuRI	GGCC	2 cut(s)	99, 146
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	98
BtsIMutI	CAGTG	2 cut(s)	185, 273
CaiI	CAGNNNCTG	1 cut(s)	86
CfoI	GCGC	1 cut(s)	254
Csp6I	GTAC	2 cut(s)	202, 269
CspCI	CAANNNNNGTGG	2 cut(s)	214, 249
CviAII	CATG	5 cut(s)	48, 142, 379, 443, 486
CviJI	RGCY	9 cut(s)	99, 107, 124, 146, 194, 216, 232, 262, 528
CviKI_1	RGCY	9 cut(s)	99, 107, 124, 146, 194, 216, 232, 262, 528
CviQI	GTAC	2 cut(s)	202, 269
DdeI	CTNAG	3 cut(s)	101, 198, 257
DpnI	GATC	3 cut(s)	152, 384, 475
DpnII	GATC	3 cut(s)	150, 382, 473
EaeI	YGGCCR	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	141
Eco32I	GATATC	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	145
Eco81I	CCTNAGG	1 cut(s)	101
EcoRV	GATATC	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	141
EcoT22I	ATGCAT	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	5 cut(s)	51, 145, 382, 446, 489
FaiI	YATR	9 cut(s)	49, 143, 293, 331, 380, 392, 444, 487, 588
FatI	CATG	5 cut(s)	47, 141, 378, 442, 485
FblI	GTMKAC	2 cut(s)	240, 330
FokI	GGATG	1 cut(s)	105
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	1 cut(s)	253
GsuI	CTGGAG	1 cut(s)	393
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	2 cut(s)	99, 146
HhaI	GCGC	1 cut(s)	254
Hin1II	CATG	5 cut(s)	51, 145, 382, 446, 489
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	2 cut(s)	83, 624
HphI	GGTGA	1 cut(s)	609
Hpy166II	GTNNAC	5 cut(s)	177, 241, 331, 491, 523
Hpy188I	TCNGA	2 cut(s)	322, 553
Hpy188III	TCNNGA	4 cut(s)	59, 197, 410, 508
Hpy8I	GTNNAC	5 cut(s)	177, 241, 331, 491, 523
HpyAV	CCTTC	2 cut(s)	364, 396
HpyCH4III	ACNGT	3 cut(s)	482, 495, 504
HpyCH4V	TGCA	3 cut(s)	394, 425, 446
HpyF10VI	GCNNNNNNNGC	4 cut(s)	152, 191, 251, 534
HpyF3I	CTNAG	3 cut(s)	101, 198, 257
Hsp92II	CATG	5 cut(s)	51, 145, 382, 446, 489
HspAI	GCGC	1 cut(s)	252
Kzo9I	GATC	3 cut(s)	150, 382, 473
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	9 cut(s)	72, 75, 88, 173, 210, 244, 248, 261, 423
MaeI	CTAG	1 cut(s)	167
MaeIII	GTNAC	1 cut(s)	495
MalI	GATC	3 cut(s)	152, 384, 475
MboI	GATC	3 cut(s)	150, 382, 473
MboII	GAAGA	2 cut(s)	362, 523
MflI	RGATCY	1 cut(s)	382
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	5 cut(s)	28, 62, 532, 566, 613
MluNI	TGGCCA	1 cut(s)	146
MnlI	CCTC	5 cut(s)	110, 145, 277, 350, 417
Mox20I	TGGCCA	1 cut(s)	146
Mph1103I	ATGCAT	1 cut(s)	448
MroXI	GAANNNNTTC	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	2 cut(s)	342, 531
Msp20I	TGGCCA	1 cut(s)	146
Mva1269I	GAATGC	1 cut(s)	446
MwoI	GCNNNNNNNGC	4 cut(s)	152, 191, 251, 534
NcoI	CCATGG	1 cut(s)	141
NdeII	GATC	3 cut(s)	150, 382, 473
NlaIII	CATG	5 cut(s)	51, 145, 382, 446, 489
NlaIV	GGNNCC	1 cut(s)	384
NsiI	ATGCAT	1 cut(s)	448
PctI	GAATGC	1 cut(s)	446
PdmI	GAANNNNTTC	1 cut(s)	374
PfeI	GAWTC	2 cut(s)	83, 624
PshAI	GACNNNNGTC	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	384
PstNI	CAGNNNCTG	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	382
RsaI	GTAC	2 cut(s)	203, 270
RsaNI	GTAC	2 cut(s)	202, 269
SaqAI	TTAA	2 cut(s)	342, 531
Sau3AI	GATC	3 cut(s)	150, 382, 473
ScaI	AGTACT	2 cut(s)	203, 270
SetI	ASST	5 cut(s)	126, 176, 196, 234, 288
Sse9I	AATT	5 cut(s)	28, 62, 532, 566, 613
SspI	AATATT	1 cut(s)	310
SspMI	CTAG	1 cut(s)	167
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	3 cut(s)	482, 495, 504
TasI	AATT	5 cut(s)	28, 62, 532, 566, 613
TatI	WGTACW	2 cut(s)	201, 268
TfiI	GAWTC	2 cut(s)	83, 624
Tru1I	TTAA	2 cut(s)	342, 531
Tru9I	TTAA	2 cut(s)	342, 531
TscAI	CASTG	2 cut(s)	192, 280
TspDTI	ATGAA	5 cut(s)	17, 367, 431, 474, 529
TspRI	CASTG	2 cut(s)	192, 280
XapI	RAATTY	1 cut(s)	28
XmiI	GTMKAC	2 cut(s)	240, 330
XmnI	GAANNNNTTC	1 cut(s)	374
XspI	CTAG	1 cut(s)	167
ZrmI	AGTACT	2 cut(s)	203, 270
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.