Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

19673494 .. 19675204

Gene Structure 1711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGTGGTTGTAGTTTTATCAGCTGCTATTGCTCTTCTTGGTCCATTCCTATTCAAGTGGCCATTTATTGGAACATCGGCTTGCAGAGGATCAGTTTATAGAGCGTTGGGCCTCATGGTGGCAGCTTCACCTTGTGCTTTGGCGGTAGCTCCATTGGCACATGCTACTGCAATTAGTTCCTGTGTGAGGAAGGGGATACTGCTGAAAGGTGGCCATGTGCTAGATGCTCTAGCTTCTTGTCACACTATTGCATTTGATAAAACTGGAACCTTGACAACCGGGGGGTTGGCGTTCAAAGCAATTGAACCAATTTACGGGCTTCGGATGAGAAATGGTGTATCAGATTTTTCTTCCTGCTGTGTCCCCAGCTGTGAAAAGCAGGCTCTTGCTGTTGCCACTGCAATGGAGAAGGGTACCACTCACCCTATTGGAAGAGCTGTGGTCAACCATAGTGAAGGGAAAGACCTTCCTTCTGTTTCTGTTGAGAGTTTTGAGTATTTTCCAGGCAGAGGTCTAATTGCTACTCTCAACGGCATCAAGGAACAGAAGGGGTTAACTGTTGAAAACATCTCTTGGTTCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0003824 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006878 GO:0008150 GO:0008324 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009642 GO:0009941 GO:0009987 GO:0015075 GO:0015318 GO:0015633 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031967 GO:0031975 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072507 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E1-E2_ATPase Hydrolase

Protein Analysis

195

Amino Acids

20.27

Weight (kDa)

8.89

Isoelectric Point (pI)

31.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	413
AccB1I	GGYRCC	1 cut(s)	413
AccB7I	CCANNNNNTGG	1 cut(s)	68
AciI	CCGC	1 cut(s)	143
AclWI	GGATC	1 cut(s)	97
AcoI	YGGCCR	2 cut(s)	59, 211
AdeI	CACNNNGTG	1 cut(s)	134
AfaI	GTAC	1 cut(s)	415
AfiI	CCNNNNNNNGG	5 cut(s)	68, 118, 186, 314, 509
AgsI	TTSAA	4 cut(s)	55, 295, 305, 563
AjnI	CCWGG	1 cut(s)	502
AluBI	AGCT	6 cut(s)	23, 125, 149, 233, 369, 437
AluI	AGCT	6 cut(s)	23, 125, 149, 233, 369, 437
AlwI	GGATC	1 cut(s)	97
AoxI	GGCC	3 cut(s)	59, 109, 211
ApeKI	GCWGC	2 cut(s)	23, 122
Asp718I	GGTACC	1 cut(s)	413
AspS9I	GGNCC	2 cut(s)	41, 109
AsuC2I	CCSGG	1 cut(s)	280
AsuHPI	GGTGA	2 cut(s)	120, 413
AvaII	GGWCC	1 cut(s)	41
BalI	TGGCCA	2 cut(s)	61, 213
BanI	GGYRCC	1 cut(s)	413
BbvI	GCAGC	2 cut(s)	10, 134
BceAI	ACGGC	1 cut(s)	547
BciT130I	CCWGG	1 cut(s)	504
BciVI	GTATCC	1 cut(s)	189
BcnI	CCSGG	1 cut(s)	280
BfaI	CTAG	2 cut(s)	221, 230
BfuI	GTATCC	1 cut(s)	189
BisI	GCNGC	2 cut(s)	24, 123
BlsI	GCNGC	2 cut(s)	25, 124
Bme1390I	CCNGG	2 cut(s)	280, 504
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	2 cut(s)	41, 109
BmiI	GGNNCC	2 cut(s)	268, 415
BmrFI	CCNGG	2 cut(s)	280, 504
BmsI	GCATC	2 cut(s)	214, 543
BpuMI	CCSGG	1 cut(s)	280
BsaJI	CCNNGG	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	5 cut(s)	68, 118, 186, 314, 509
Bse1I	ACTGG	1 cut(s)	268
Bse3DI	GCAATG	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	504
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	5 cut(s)	68, 118, 186, 314, 509
BseMI	GCAATG	1 cut(s)	408
BseNI	ACTGG	1 cut(s)	268
BseXI	GCAGC	2 cut(s)	10, 134
BseYI	CCCAGC	1 cut(s)	365
BshFI	GGCC	3 cut(s)	61, 111, 213
BshNI	GGYRCC	1 cut(s)	413
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	5 cut(s)	68, 118, 186, 314, 509
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	3 cut(s)	61, 111, 213
Bsp143I	GATC	1 cut(s)	89
BspACI	CCGC	1 cut(s)	143
BspANI	GGCC	3 cut(s)	61, 111, 213
BspLI	GGNNCC	2 cut(s)	268, 415
BspPI	GGATC	1 cut(s)	97
BspQI	GCTCTTC	2 cut(s)	39, 427
BspT107I	GGYRCC	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	408
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	1 cut(s)	559
Bst6I	CTCTTC	2 cut(s)	39, 427
BstC8I	GCNNGC	2 cut(s)	82, 381
BstENI	CCTNNNNNAGG	1 cut(s)	184
BstF5I	GGATG	1 cut(s)	330
BstKTI	GATC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	89
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 155, 296
BstNI	CCWGG	1 cut(s)	504
BstNSI	RCATGY	1 cut(s)	164
BstSCI	CCNGG	2 cut(s)	278, 502
BstV1I	GCAGC	2 cut(s)	10, 134
BstXI	CCANNNNNNTGG	1 cut(s)	403
BsuI	GTATCC	1 cut(s)	189
BsuRI	GGCC	3 cut(s)	61, 111, 213
BtsCI	GGATG	1 cut(s)	330
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	1 cut(s)	396
Cac8I	GCNNGC	2 cut(s)	82, 381
Cfr13I	GGNCC	2 cut(s)	41, 109
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	3 cut(s)	115, 161, 215
CviQI	GTAC	1 cut(s)	414
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
DraIII	CACNNNGTG	1 cut(s)	134
EaeI	YGGCCR	2 cut(s)	59, 211
Eam1104I	CTCTTC	2 cut(s)	39, 427
EarI	CTCTTC	2 cut(s)	39, 427
Eco47I	GGWCC	1 cut(s)	41
EcoNI	CCTNNNNNAGG	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	502
FaeI	CATG	3 cut(s)	118, 164, 218
FaiI	YATR	5 cut(s)	99, 116, 162, 216, 450
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	3 cut(s)	114, 160, 214
Fnu4HI	GCNGC	2 cut(s)	24, 123
FokI	GGATG	1 cut(s)	337
Fsp4HI	GCNGC	2 cut(s)	24, 123
FspBI	CTAG	2 cut(s)	221, 230
GluI	GCNGC	2 cut(s)	24, 123
GsaI	CCCAGC	1 cut(s)	369
HaeIII	GGCC	3 cut(s)	61, 111, 213
HapII	CCGG	1 cut(s)	279
Hin1II	CATG	3 cut(s)	118, 164, 218
HincII	GTYRAC	2 cut(s)	445, 555
HindII	GTYRAC	2 cut(s)	445, 555
HpaI	GTTAAC	1 cut(s)	555
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	2 cut(s)	120, 413
Hpy166II	GTNNAC	2 cut(s)	445, 555
Hpy188I	TCNGA	2 cut(s)	324, 343
Hpy8I	GTNNAC	2 cut(s)	445, 555
HpyAV	CCTTC	6 cut(s)	184, 403, 449, 476, 480, 541
HpyCH4III	ACNGT	1 cut(s)	559
HpyCH4V	TGCA	4 cut(s)	84, 170, 251, 401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 155, 296
Hsp92II	CATG	3 cut(s)	118, 164, 218
KpnI	GGTACC	1 cut(s)	417
KspAI	GTTAAC	1 cut(s)	555
Kzo9I	GATC	1 cut(s)	89
LguI	GCTCTTC	2 cut(s)	39, 427
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	8 cut(s)	193, 249, 292, 365, 367, 379, 489, 516
Lsp1109I	GCAGC	2 cut(s)	10, 134
LweI	GCATC	2 cut(s)	214, 543
MaeI	CTAG	2 cut(s)	221, 230
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MboII	GAAGA	3 cut(s)	26, 342, 444
MfeI	CAATTG	1 cut(s)	300
MlsI	TGGCCA	2 cut(s)	61, 213
MluCI	AATT	4 cut(s)	171, 300, 309, 516
MluNI	TGGCCA	2 cut(s)	61, 213
MnlI	CCTC	4 cut(s)	80, 122, 180, 503
Mox20I	TGGCCA	2 cut(s)	61, 213
MscI	TGGCCA	2 cut(s)	61, 213
MseI	TTAA	1 cut(s)	554
MslI	CAYNNNNRTG	1 cut(s)	401
Msp20I	TGGCCA	2 cut(s)	61, 213
MspA1I	CMGCKG	2 cut(s)	23, 369
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	2 cut(s)	280, 504
MunI	CAATTG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	504
MwoI	GCNNNNNNNGC	3 cut(s)	29, 155, 296
NciI	CCSGG	1 cut(s)	280
NdeII	GATC	1 cut(s)	89
NlaIII	CATG	3 cut(s)	118, 164, 218
NlaIV	GGNNCC	2 cut(s)	268, 415
NmuCI	GTSAC	1 cut(s)	239
NspI	RCATGY	1 cut(s)	164
PciSI	GCTCTTC	2 cut(s)	39, 427
PflMI	CCANNNNNTGG	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	25, 124
Psp6I	CCWGG	1 cut(s)	502
PspFI	CCCAGC	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	2 cut(s)	268, 415
PspPI	GGNCC	2 cut(s)	41, 109
PvuII	CAGCTG	2 cut(s)	23, 369
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
RseI	CAYNNNNRTG	1 cut(s)	401
SapI	GCTCTTC	2 cut(s)	39, 427
SaqAI	TTAA	1 cut(s)	554
SatI	GCNGC	2 cut(s)	24, 123
Sau3AI	GATC	1 cut(s)	89
Sau96I	GGNCC	2 cut(s)	41, 109
ScrFI	CCNGG	2 cut(s)	280, 504
SfaNI	GCATC	2 cut(s)	214, 543
SinI	GGWCC	1 cut(s)	41
SmiMI	CAYNNNNRTG	1 cut(s)	401
Sse9I	AATT	4 cut(s)	171, 300, 309, 516
SsiI	CCGC	1 cut(s)	143
SspMI	CTAG	2 cut(s)	221, 230
StyD4I	CCNGG	2 cut(s)	278, 502
TaaI	ACNGT	1 cut(s)	559
TasI	AATT	4 cut(s)	171, 300, 309, 516
Tru1I	TTAA	1 cut(s)	554
Tru9I	TTAA	1 cut(s)	554
TscAI	CASTG	1 cut(s)	403
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	2 cut(s)	23, 122
Tsp45I	GTSAC	1 cut(s)	239
TspRI	CASTG	1 cut(s)	403
Van91I	CCANNNNNTGG	1 cut(s)	68
VpaK11BI	GGWCC	1 cut(s)	41
XagI	CCTNNNNNAGG	1 cut(s)	184
XceI	RCATGY	1 cut(s)	164
XspI	CTAG	2 cut(s)	221, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.