pycom15g25690

Belongs to the NPH3 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
20214698 .. 20215173
476 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 240 bp
ATGGCGGATATCGAATCTGGCGGGGAGAGTACTGCACCCACCACCACCACCACTGCCAACATGTCCTCCAAGAAGAAGGAGCTTCTTTCTTCTGCCTTGAAGAGAACTAGTGAATGGATTTTTTCGCAGGAGATTCCGAGCGATATTAGTATTAATGTTGGAGGAGTTTCCTTCTCATTGCACAAGGTAATTTGTAGTGTTGATCAATGTTTTAAAAGGCTCGTCTCAGGGCGCGCCTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

80

Amino Acids

8.47

Weight (kDa)

7.8

Isoelectric Point (pI)

49.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 234
AciI CCGC 2 cut(s) 5, 21
AfaI GTAC 1 cut(s) 31
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 1 cut(s) 100
AhlI ACTAGT 1 cut(s) 107
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
Alw26I GTCTC 1 cut(s) 229
AscI GGCGCGCC 1 cut(s) 232
AseI ATTAAT 1 cut(s) 153
AspLEI GCGC 2 cut(s) 234, 236
BclI TGATCA 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 229
BcuI ACTAGT 1 cut(s) 107
BfaI CTAG 2 cut(s) 108, 238
BmcAI AGTACT 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bse3DI GCAATG 1 cut(s) 176
BseMI GCAATG 1 cut(s) 176
BseMII CTCAG 1 cut(s) 240
BsePI GCGCGC 1 cut(s) 232
BseRI GAGGAG 1 cut(s) 177
BsgI GTGCAG 1 cut(s) 18
Bsh1236I CGCG 1 cut(s) 234
BsmAI GTCTC 1 cut(s) 229
BsmBI CGTCTC 1 cut(s) 229
Bsp143I GATC 1 cut(s) 202
BspACI CCGC 2 cut(s) 5, 21
BspCNI CTCAG 1 cut(s) 239
BspFNI CGCG 1 cut(s) 234
BsrDI GCAATG 1 cut(s) 176
BssHII GCGCGC 1 cut(s) 232
BssMI GATC 1 cut(s) 202
Bst6I CTCTTC 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 1 cut(s) 226
BstFNI CGCG 1 cut(s) 234
BstHHI GCGC 2 cut(s) 234, 236
BstKTI GATC 1 cut(s) 205
BstMAI GTCTC 1 cut(s) 229
BstMBI GATC 1 cut(s) 202
BstNSI RCATGY 1 cut(s) 64
BstUI CGCG 1 cut(s) 234
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 234
CfoI GCGC 2 cut(s) 234, 236
Csp6I GTAC 1 cut(s) 30
CviAII CATG 1 cut(s) 61
CviJI RGCY 2 cut(s) 82, 220
CviKI_1 RGCY 2 cut(s) 82, 220
CviQI GTAC 1 cut(s) 30
DdeI CTNAG 1 cut(s) 226
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
DraI TTTAAA 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
EciI GGCGGA 1 cut(s) 20
Eco32I GATATC 1 cut(s) 10
EcoRV GATATC 1 cut(s) 10
Esp3I CGTCTC 1 cut(s) 229
FaeI CATG 1 cut(s) 64
FaiI YATR 1 cut(s) 62
FatI CATG 1 cut(s) 60
FauI CCCGC 1 cut(s) 14
FbaI TGATCA 1 cut(s) 202
FspBI CTAG 2 cut(s) 108, 238
GlaI GCGC 2 cut(s) 233, 235
HhaI GCGC 2 cut(s) 234, 236
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 2 cut(s) 232, 234
HinP1I GCGC 2 cut(s) 232, 234
HinfI GANTC 2 cut(s) 14, 133
Hpy188I TCNGA 1 cut(s) 138
HpyAV CCTTC 2 cut(s) 70, 181
HpyCH4V TGCA 2 cut(s) 35, 181
HpyF3I CTNAG 1 cut(s) 226
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 2 cut(s) 232, 234
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 1 cut(s) 202
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 3 cut(s) 3, 113, 213
MaeI CTAG 2 cut(s) 108, 238
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 3 cut(s) 81, 85, 112
MluCI AATT 1 cut(s) 189
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 2 cut(s) 76, 155
MseI TTAA 2 cut(s) 153, 213
MvnI CGCG 1 cut(s) 234
NdeII GATC 1 cut(s) 202
NlaIII CATG 1 cut(s) 64
NspI RCATGY 1 cut(s) 64
PalAI GGCGCGCC 1 cut(s) 232
PauI GCGCGC 1 cut(s) 232
PciI ACATGT 1 cut(s) 60
PfeI GAWTC 2 cut(s) 14, 133
PscI ACATGT 1 cut(s) 60
PshBI ATTAAT 1 cut(s) 153
PteI GCGCGC 1 cut(s) 232
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
SaqAI TTAA 2 cut(s) 153, 213
Sau3AI GATC 1 cut(s) 202
ScaI AGTACT 1 cut(s) 31
SetI ASST 2 cut(s) 84, 189
SgsI GGCGCGCC 1 cut(s) 232
SpeI ACTAGT 1 cut(s) 107
Sse9I AATT 1 cut(s) 189
SsiI CCGC 2 cut(s) 5, 21
SspMI CTAG 2 cut(s) 108, 238
TaqI TCGA 1 cut(s) 12
TasI AATT 1 cut(s) 189
TatI WGTACW 1 cut(s) 29
TfiI GAWTC 2 cut(s) 14, 133
Tru1I TTAA 2 cut(s) 153, 213
Tru9I TTAA 2 cut(s) 153, 213
TscAI CASTG 1 cut(s) 58
TspRI CASTG 1 cut(s) 58
VspI ATTAAT 1 cut(s) 153
XceI RCATGY 1 cut(s) 64
XspI CTAG 2 cut(s) 108, 238
ZrmI AGTACT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.