pycom15g26660

spliceosomal complex assembly

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
21678083 .. 21678669
587 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 495 bp
ATGGATGATGGCGTCTCCAAAAAGGAAAAAGATATTGCTTTTCAAGGTGTCGAGAACAACAAAGTTTTAAGTGACACATGTGAACTTGCGGATGATCTTGCACTATTTATCAAGCAATTCAGCAGAGGTCTCAAAAACAAAGGAAGAGATGTCAAGTGGTCTGAGGGGTCATCAAACAATCGTGGAAAACTTTTCTCAGGTGAAAAATCTAGTGATTCCTCAGGAAAGAAAGACAAAAATCTATCAAAAGTTTCTGGTTTGTGCTATGCATGTGGTGGAAGTGGCACCGTGCTACTGAATAATGAAGAAGAGATTGTTGCATTCGTTGCATCTGTTGATGGAGCGTCTTCCAGTGAAAAAGATGTATTGGTGGATGATACTAATGTGTCATCTTCTCAGGAGTTGTCAAGCTTATATGAATCTTTGTTTGATGAGATGTGTGTTTCAGCATTGGATAATGTTGAGCTTACCGAAAAGATATCTGTGTTGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

165

Amino Acids

17.64

Weight (kDa)

4.54

Isoelectric Point (pI)

30.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 284
AciI CCGC 1 cut(s) 89
AcyI GRCGYC 1 cut(s) 12
AflIII ACRYGT 1 cut(s) 77
AgsI TTSAA 1 cut(s) 44
AluBI AGCT 2 cut(s) 411, 466
AluI AGCT 2 cut(s) 411, 466
Alw26I GTCTC 2 cut(s) 19, 134
AsuHPI GGTGA 1 cut(s) 212
AxyI CCTNAGG 1 cut(s) 220
BaeI ACNNNNGTAYC 2 cut(s) 369, 402
BanI GGYRCC 1 cut(s) 284
BbsI GAAGAC 1 cut(s) 339
BccI CCATC 2 cut(s) 2, 332
BcoDI GTCTC 2 cut(s) 19, 134
BfaI CTAG 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 286
BmsI GCATC 1 cut(s) 338
BpiI GAAGAC 1 cut(s) 339
BsaHI GRCGYC 1 cut(s) 12
BsaI GGTCTC 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 351
Bse21I CCTNAGG 1 cut(s) 220
BseGI GGATG 3 cut(s) 10, 97, 379
BseMII CTCAG 4 cut(s) 153, 210, 234, 410
BseNI ACTGG 1 cut(s) 351
BshNI GGYRCC 1 cut(s) 284
BsmAI GTCTC 2 cut(s) 19, 134
BsmBI CGTCTC 1 cut(s) 19
BsmI GAATGC 1 cut(s) 320
Bso31I GGTCTC 1 cut(s) 134
Bsp143I GATC 1 cut(s) 94
BspACI CCGC 1 cut(s) 89
BspCNI CTCAG 4 cut(s) 154, 209, 233, 409
BspLI GGNNCC 1 cut(s) 286
BspT107I GGYRCC 1 cut(s) 284
BspTNI GGTCTC 1 cut(s) 134
BsrI ACTGG 1 cut(s) 351
BssMI GATC 1 cut(s) 94
BssNI GRCGYC 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 2 cut(s) 139, 303
BstACI GRCGYC 1 cut(s) 12
BstAPI GCANNNNNTGC 1 cut(s) 326
BstDEI CTNAG 4 cut(s) 162, 196, 220, 396
BstF5I GGATG 3 cut(s) 10, 97, 379
BstKTI GATC 1 cut(s) 97
BstMAI GTCTC 2 cut(s) 19, 134
BstMBI GATC 1 cut(s) 94
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstNSI RCATGY 2 cut(s) 81, 273
BstV2I GAAGAC 1 cut(s) 339
Bsu36I CCTNAGG 1 cut(s) 220
BtsCI GGATG 3 cut(s) 10, 97, 379
BtsIMutI CAGTG 1 cut(s) 358
CseI GACGC 1 cut(s) 333
CviAII CATG 2 cut(s) 78, 270
CviJI RGCY 2 cut(s) 411, 466
CviKI_1 RGCY 2 cut(s) 411, 466
DdeI CTNAG 4 cut(s) 162, 196, 220, 396
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eam1104I CTCTTC 2 cut(s) 139, 303
EarI CTCTTC 2 cut(s) 139, 303
Eco31I GGTCTC 1 cut(s) 134
Eco32I GATATC 1 cut(s) 480
Eco81I CCTNAGG 1 cut(s) 220
EcoRV GATATC 1 cut(s) 480
EcoT22I ATGCAT 1 cut(s) 271
Esp3I CGTCTC 1 cut(s) 19
FaeI CATG 2 cut(s) 81, 273
FaiI YATR 5 cut(s) 79, 267, 271, 415, 417
FatI CATG 2 cut(s) 77, 269
FokI GGATG 3 cut(s) 17, 104, 386
FspBI CTAG 1 cut(s) 210
HgaI GACGC 1 cut(s) 333
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 2 cut(s) 81, 273
HindIII AAGCTT 1 cut(s) 409
HinfI GANTC 2 cut(s) 215, 419
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 3 cut(s) 52, 222, 398
Hpy8I GTNNAC 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4V TGCA 5 cut(s) 101, 269, 320, 329, 490
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpyF3I CTNAG 4 cut(s) 162, 196, 220, 396
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 2 cut(s) 81, 273
Kzo9I GATC 1 cut(s) 94
LmnI GCTCC 1 cut(s) 341
LpnPI CCDG 5 cut(s) 183, 207, 240, 364, 383
LweI GCATC 1 cut(s) 338
MaeI CTAG 1 cut(s) 210
MaeIII GTNAC 1 cut(s) 71
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 5 cut(s) 156, 317, 320, 339, 384
MluCI AATT 1 cut(s) 116
MnlI CCTC 3 cut(s) 119, 157, 229
Mph1103I ATGCAT 1 cut(s) 271
MseI TTAA 1 cut(s) 68
Mva1269I GAATGC 1 cut(s) 320
MwoI GCNNNNNNNGC 1 cut(s) 326
NdeII GATC 1 cut(s) 94
NlaIII CATG 2 cut(s) 81, 273
NlaIV GGNNCC 1 cut(s) 286
NmuCI GTSAC 1 cut(s) 71
NsiI ATGCAT 1 cut(s) 271
NspI RCATGY 2 cut(s) 81, 273
PciI ACATGT 1 cut(s) 77
PctI GAATGC 1 cut(s) 320
PfeI GAWTC 2 cut(s) 215, 419
PscI ACATGT 1 cut(s) 77
PspN4I GGNNCC 1 cut(s) 286
SaqAI TTAA 1 cut(s) 68
Sau3AI GATC 1 cut(s) 94
SetI ASST 5 cut(s) 49, 130, 202, 413, 468
SfaNI GCATC 1 cut(s) 338
Sse9I AATT 1 cut(s) 116
SsiI CCGC 1 cut(s) 89
SspMI CTAG 1 cut(s) 210
TaaI ACNGT 1 cut(s) 289
TaqI TCGA 1 cut(s) 51
TasI AATT 1 cut(s) 116
TfiI GAWTC 2 cut(s) 215, 419
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 1 cut(s) 358
TseFI GTSAC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 2 cut(s) 318, 432
TspRI CASTG 1 cut(s) 358
XceI RCATGY 2 cut(s) 81, 273
XspI CTAG 1 cut(s) 210
Zsp2I ATGCAT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.