pycom15g26740

Redoxin

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Reverse (-)
21850437 .. 21851044
608 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 474 bp
ATGGCAACCTCCCTCACAATCTCAAGGCTCCTCACAGCCCCTAAATCCTTCACTTTCTCCGTAGGCACTGCCGCACCTAAAACATCTCTCTTCTCACCCAAATCCATCTCCTCCAAAATCTCCTACACCCCTTTCCCCCATCCAAAAACCCTCATCCGCTTCTCCATCACCACCTCTAAACTTATCTCCGCGACCATCGCCGTAGGTAACAAGCTTCCAGAAGTTACCTTTCCCACCTCGACGCTGCTGGGGACGTCCAACTCCAAGAAGGCAATCCTCTTTGCTGCCCCCGACACCTTGACCTCAACCTTCTCCCAAAAGCACATCCTAAGATTCAACGACGATTCCATGAGGGCGATCTGGGCAAAGCTCAATTTGAGTGATAAGCTAGTGGGGCTGGGCGTCTGGTCCAAAAGGTCCTTGCTTTTGTTGGAGGATGCAGTTGTTAAGGTCTGCAATGCGAGCTGCGAGTGA

Protein Analysis

158

Amino Acids

16.95

Weight (kDa)

10.07

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 257
AccII CGCG 1 cut(s) 191
AciI CCGC 3 cut(s) 72, 157, 189
AcyI GRCGYC 2 cut(s) 254, 402
AgsI TTSAA 1 cut(s) 337
AluBI AGCT 4 cut(s) 214, 370, 388, 465
AluI AGCT 4 cut(s) 214, 370, 388, 465
ApeKI GCWGC 3 cut(s) 244, 284, 465
AspS9I GGNCC 2 cut(s) 408, 417
AsuHPI GGTGA 2 cut(s) 87, 160
AvaII GGWCC 2 cut(s) 408, 417
BbvI GCAGC 3 cut(s) 231, 271, 452
BccI CCATC 4 cut(s) 113, 147, 173, 203
BceAI ACGGC 1 cut(s) 185
BfaI CTAG 1 cut(s) 389
BisI GCNGC 4 cut(s) 72, 245, 285, 466
BlsI GCNGC 4 cut(s) 73, 246, 286, 467
Bme18I GGWCC 2 cut(s) 408, 417
BmgT120I GGNCC 2 cut(s) 408, 417
BmiI GGNNCC 1 cut(s) 29
BmsI GCATC 1 cut(s) 427
BpuEI CTTGAG 1 cut(s) 7
BsaHI GRCGYC 2 cut(s) 254, 402
Bse3DI GCAATG 1 cut(s) 463
BseGI GGATG 4 cut(s) 139, 153, 324, 442
BseMI GCAATG 1 cut(s) 463
BseRI GAGGAG 2 cut(s) 20, 100
BseXI GCAGC 3 cut(s) 231, 271, 452
BseYI CCCAGC 2 cut(s) 247, 397
Bsh1236I CGCG 1 cut(s) 191
BslFI GGGAC 1 cut(s) 265
BsmFI GGGAC 1 cut(s) 265
Bsp143I GATC 1 cut(s) 357
BspACI CCGC 3 cut(s) 72, 157, 189
BspFNI CGCG 1 cut(s) 191
BspLI GGNNCC 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 463
BssMI GATC 1 cut(s) 357
BssNI GRCGYC 2 cut(s) 254, 402
Bst6I CTCTTC 1 cut(s) 95
BstACI GRCGYC 2 cut(s) 254, 402
BstC8I GCNNGC 1 cut(s) 463
BstDEI CTNAG 1 cut(s) 329
BstF5I GGATG 4 cut(s) 139, 153, 324, 442
BstFNI CGCG 1 cut(s) 191
BstKTI GATC 1 cut(s) 360
BstMBI GATC 1 cut(s) 357
BstMWI GCNNNNNNNGC 4 cut(s) 197, 362, 394, 462
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 3 cut(s) 231, 271, 452
BtgZI GCGATG 1 cut(s) 181
BtsCI GGATG 4 cut(s) 139, 153, 324, 442
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 1 cut(s) 463
Cfr13I GGNCC 2 cut(s) 408, 417
CseI GACGC 2 cut(s) 250, 391
CviAII CATG 1 cut(s) 349
CviJI RGCY 7 cut(s) 28, 38, 214, 370, 388, 397, 465
CviKI_1 RGCY 7 cut(s) 28, 38, 214, 370, 388, 397, 465
DdeI CTNAG 1 cut(s) 329
DpnI GATC 1 cut(s) 359
DpnII GATC 1 cut(s) 357
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
Eco47I GGWCC 2 cut(s) 408, 417
EcoO109I RGGNCCY 1 cut(s) 417
FaeI CATG 1 cut(s) 352
FaiI YATR 1 cut(s) 350
FaqI GGGAC 1 cut(s) 265
FatI CATG 1 cut(s) 348
Fnu4HI GCNGC 4 cut(s) 72, 245, 285, 466
FokI GGATG 4 cut(s) 126, 140, 311, 449
Fsp4HI GCNGC 4 cut(s) 72, 245, 285, 466
FspBI CTAG 1 cut(s) 389
GluI GCNGC 4 cut(s) 72, 245, 285, 466
GsaI CCCAGC 2 cut(s) 251, 401
HgaI GACGC 2 cut(s) 250, 391
Hin1I GRCGYC 2 cut(s) 254, 402
Hin1II CATG 1 cut(s) 352
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 2 cut(s) 333, 344
HphI GGTGA 2 cut(s) 87, 160
Hpy188III TCNNGA 1 cut(s) 218
Hpy99I CGWCG 2 cut(s) 244, 344
HpyAV CCTTC 3 cut(s) 58, 262, 319
HpyCH4IV ACGT 1 cut(s) 254
HpyCH4V TGCA 2 cut(s) 440, 456
HpyF10VI GCNNNNNNNGC 4 cut(s) 197, 362, 394, 462
HpyF3I CTNAG 1 cut(s) 329
HpySE526I ACGT 1 cut(s) 254
Hsp92I GRCGYC 2 cut(s) 254, 402
Hsp92II CATG 1 cut(s) 352
Kzo9I GATC 1 cut(s) 357
LmnI GCTCC 1 cut(s) 33
LpnPI CCDG 5 cut(s) 231, 233, 346, 383, 391
Lsp1109I GCAGC 3 cut(s) 231, 271, 452
LweI GCATC 1 cut(s) 427
MaeI CTAG 1 cut(s) 389
MaeII ACGT 1 cut(s) 254
MaeIII GTNAC 2 cut(s) 206, 223
MalI GATC 1 cut(s) 359
MboI GATC 1 cut(s) 357
MboII GAAGA 1 cut(s) 82
MluCI AATT 1 cut(s) 373
MmeI TCCRAC 2 cut(s) 282, 411
MseI TTAA 1 cut(s) 447
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 4 cut(s) 197, 362, 394, 462
NdeII GATC 1 cut(s) 357
NlaIII CATG 1 cut(s) 352
NlaIV GGNNCC 1 cut(s) 29
PfeI GAWTC 2 cut(s) 333, 344
PkrI GCNGC 4 cut(s) 73, 246, 286, 467
PpuMI RGGWCCY 1 cut(s) 417
Psp5II RGGWCCY 1 cut(s) 417
PspFI CCCAGC 2 cut(s) 247, 397
PspN4I GGNNCC 1 cut(s) 29
PspPI GGNCC 2 cut(s) 408, 417
PspPPI RGGWCCY 1 cut(s) 417
SaqAI TTAA 1 cut(s) 447
SatI GCNGC 4 cut(s) 72, 245, 285, 466
Sau3AI GATC 1 cut(s) 357
Sau96I GGNCC 2 cut(s) 408, 417
SfaNI GCATC 1 cut(s) 427
SinI GGWCC 2 cut(s) 408, 417
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
Sse9I AATT 1 cut(s) 373
SsiI CCGC 3 cut(s) 72, 157, 189
SspMI CTAG 1 cut(s) 389
TaiI ACGT 1 cut(s) 257
TaqI TCGA 1 cut(s) 239
TasI AATT 1 cut(s) 373
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 2 cut(s) 333, 344
Tru1I TTAA 1 cut(s) 447
Tru9I TTAA 1 cut(s) 447
TscAI CASTG 1 cut(s) 73
TseI GCWGC 3 cut(s) 244, 284, 465
TspGWI ACGGA 1 cut(s) 49
TspRI CASTG 1 cut(s) 73
VpaK11BI GGWCC 2 cut(s) 408, 417
XspI CTAG 1 cut(s) 389
ZraI GACGTC 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.