Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

23172931 .. 23175256

Gene Structure 2326 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCGGAGCAGAGGAACAACAACAACAACAGGTGGAACTGGGAGGTCAGTGGCTTCGAGCCAAGGAAGTTGCCTTCTTCGTCGACGTCGGCTGCGGTAGCGGCGTCCAGCTTCGACCACCACCACGACAATTACAAGCCTGGTGCGCCGTTAGTTGGGCGGTACTCGATCTCGGCTGCGTCGGCTTTGGCTCAGTCTGAGCTCGCCAACTCCAACAACCAGGCTGTGGCTTCCAAGCTCCAGAAGCTCAATGATAAAGTTAAGCTTGCTAGAGAAGATTACTTGGCGTTGAGACAAGAAGCAAGTGAGCTGCACGAGTACTCGAATGCGAAACTTGAACGAGCTACACGTTATCTTGGTGTTCTTGCGAATAAAACCCGAAAACTAGATCAGTTTGCCCTTGAAACCGAGGCTAGAATTTCTCCACTGATCAATGAGAAGCGAAGGTTGTTCAATGACTTATTGACGGCCAAAGGAAACATAAAGGTATTTTGTCGTACAAGACCTTTATTTGAGGATGAAGGTTCCTCAATTGCTGAATATCCTGACGAGTACAATATCCGCGTCAATACTGGTGATGATGCCCTGTCCAACCCCAAGAAGGATTTTGAACTTGACAAAGTTTATGGACCTCATGTTGGACAGGCTGAACTTTTCCATGATGTTCAACCATTGGTGCAATCAGCATTGGATGGATATAATGTTTCCATATTTGCATATGGACAAACCAACTCTGGAAAGACACACACTATGGAAGGATCTAGCCATGATCGCGTTTATAAGATCGATCTTTCGAGGAACTATTTGATTTATCCAATTCTGATTCCACTTCTACTTCAAGATTTAAATTCTCCGTTACAGTTTTTGAGCTCTACAACGAACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0005886 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009941 GO:0009987 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019750 GO:0022402 GO:0022607 GO:0030029 GO:0030048 GO:0030705 GO:0031022 GO:0031967 GO:0031975 GO:0032506 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051301 GO:0051640 GO:0051641 GO:0051644 GO:0051647 GO:0051649 GO:0051656 GO:0051667 GO:0061640 GO:0071840 GO:0071944 GO:0099515 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

296

Amino Acids

33.18

Weight (kDa)

6.72

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Microtub_bd	PF16796	146 - 257	3.5e-28	Microtubule binding
Kinesin	PF00225	166 - 255	9.6e-23	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	780
AatII	GACGTC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	226
AccI	GTMKAC	1 cut(s)	83
AccII	CGCG	2 cut(s)	564, 774
AciI	CCGC	5 cut(s)	5, 95, 101, 160, 562
AclWI	GGATC	1 cut(s)	766
AcoI	YGGCCR	1 cut(s)	468
AcsI	RAATTY	2 cut(s)	417, 847
AcyI	GRCGYC	2 cut(s)	86, 104
AfaI	GTAC	4 cut(s)	164, 320, 499, 554
AfiI	CCNNNNNNNGG	4 cut(s)	155, 226, 601, 638
AflIII	ACRYGT	1 cut(s)	347
AgsI	TTSAA	6 cut(s)	338, 404, 454, 611, 668, 839
AjnI	CCWGG	2 cut(s)	139, 219
AluBI	AGCT	8 cut(s)	111, 202, 238, 247, 265, 310, 344, 870
AluI	AGCT	8 cut(s)	111, 202, 238, 247, 265, 310, 344, 870
Alw21I	GWGCWC	2 cut(s)	204, 872
Alw26I	GTCTC	1 cut(s)	286
AlwI	GGATC	1 cut(s)	766
AoxI	GGCC	1 cut(s)	468
ApeKI	GCWGC	3 cut(s)	92, 176, 310
ApoI	RAATTY	2 cut(s)	417, 847
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	629
AsuHPI	GGTGA	1 cut(s)	587
AvaII	GGWCC	1 cut(s)	629
BanII	GRGCYC	2 cut(s)	204, 872
BauI	CACGAG	1 cut(s)	314
Bbv12I	GWGCWC	2 cut(s)	204, 872
BbvI	GCAGC	3 cut(s)	79, 163, 297
BccI	CCATC	1 cut(s)	686
BceAI	ACGGC	2 cut(s)	133, 483
BciT130I	CCWGG	2 cut(s)	141, 221
BclI	TGATCA	1 cut(s)	429
BcoDI	GTCTC	1 cut(s)	286
BfaI	CTAG	4 cut(s)	270, 386, 414, 762
BisI	GCNGC	4 cut(s)	93, 102, 177, 311
BlsI	GCNGC	4 cut(s)	94, 103, 178, 312
BmcAI	AGTACT	1 cut(s)	320
Bme1390I	CCNGG	2 cut(s)	141, 221
Bme18I	GGWCC	1 cut(s)	629
BmgT120I	GGNCC	1 cut(s)	629
BmiI	GGNNCC	1 cut(s)	526
BmrFI	CCNGG	2 cut(s)	141, 221
BmrI	ACTGGG	1 cut(s)	49
BmsI	GCATC	1 cut(s)	571
BmuI	ACTGGG	1 cut(s)	49
BpmI	CTGGAG	1 cut(s)	224
Bsa29I	ATCGAT	1 cut(s)	786
BsaHI	GRCGYC	2 cut(s)	86, 104
BsaJI	CCNNGG	2 cut(s)	62, 408
Bsc4I	CCNNNNNNNGG	4 cut(s)	155, 226, 601, 638
Bse1I	ACTGG	2 cut(s)	44, 577
BseBI	CCWGG	2 cut(s)	141, 221
BseCI	ATCGAT	1 cut(s)	786
BseDI	CCNNGG	2 cut(s)	62, 408
BseGI	GGATG	2 cut(s)	523, 697
BseLI	CCNNNNNNNGG	4 cut(s)	155, 226, 601, 638
BseMII	CTCAG	2 cut(s)	189, 206
BseNI	ACTGG	2 cut(s)	44, 577
BseXI	GCAGC	3 cut(s)	79, 163, 297
BsgI	GTGCAG	1 cut(s)	296
Bsh1236I	CGCG	2 cut(s)	564, 774
BshFI	GGCC	1 cut(s)	470
BshVI	ATCGAT	1 cut(s)	786
BsiHKAI	GWGCWC	2 cut(s)	204, 872
BslI	CCNNNNNNNGG	4 cut(s)	155, 226, 601, 638
BsmAI	GTCTC	1 cut(s)	286
BsmI	GAATGC	1 cut(s)	331
BsnI	GGCC	1 cut(s)	470
Bsp1286I	GDGCHC	2 cut(s)	204, 872
Bsp143I	GATC	7 cut(s)	168, 388, 429, 758, 769, 783, 787
BspACI	CCGC	5 cut(s)	5, 95, 101, 160, 562
BspANI	GGCC	1 cut(s)	470
BspCNI	CTCAG	2 cut(s)	190, 205
BspDI	ATCGAT	1 cut(s)	786
BspFNI	CGCG	2 cut(s)	564, 774
BspLI	GGNNCC	1 cut(s)	526
BspPI	GGATC	1 cut(s)	766
BsrI	ACTGG	2 cut(s)	44, 577
BssECI	CCNNGG	2 cut(s)	62, 408
BssMI	GATC	7 cut(s)	168, 388, 429, 758, 769, 783, 787
BssNI	GRCGYC	2 cut(s)	86, 104
BssSI	CACGAG	1 cut(s)	314
BssT1I	CCWWGG	1 cut(s)	62
Bst2BI	CACGAG	1 cut(s)	314
Bst2UI	CCWGG	2 cut(s)	141, 221
Bst4CI	ACNGT	1 cut(s)	861
BstACI	GRCGYC	2 cut(s)	86, 104
BstC8I	GCNNGC	2 cut(s)	204, 267
BstDEI	CTNAG	2 cut(s)	192, 198
BstF5I	GGATG	2 cut(s)	523, 697
BstFNI	CGCG	2 cut(s)	564, 774
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	7 cut(s)	171, 391, 432, 761, 772, 786, 790
BstMAI	GTCTC	1 cut(s)	286
BstMBI	GATC	7 cut(s)	168, 388, 429, 758, 769, 783, 787
BstMWI	GCNNNNNNNGC	6 cut(s)	98, 101, 145, 182, 244, 771
BstNI	CCWGG	2 cut(s)	141, 221
BstSCI	CCNGG	2 cut(s)	139, 219
BstUI	CGCG	2 cut(s)	564, 774
BstV1I	GCAGC	3 cut(s)	79, 163, 297
BstX2I	RGATCY	1 cut(s)	758
BstYI	RGATCY	1 cut(s)	758
Bsu15I	ATCGAT	1 cut(s)	786
BsuRI	GGCC	1 cut(s)	470
BsuTUI	ATCGAT	1 cut(s)	786
BtsCI	GGATG	2 cut(s)	523, 697
BtsIMutI	CAGTG	2 cut(s)	55, 425
Cac8I	GCNNGC	2 cut(s)	204, 267
CfoI	GCGC	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	629
ClaI	ATCGAT	1 cut(s)	786
CseI	GACGC	3 cut(s)	93, 168, 553
Csp6I	GTAC	4 cut(s)	163, 319, 498, 553
CviAII	CATG	3 cut(s)	635, 659, 767
CviQI	GTAC	4 cut(s)	163, 319, 498, 553
DdeI	CTNAG	2 cut(s)	192, 198
DpnI	GATC	7 cut(s)	170, 390, 431, 760, 771, 785, 789
DpnII	GATC	7 cut(s)	168, 388, 429, 758, 769, 783, 787
DraI	TTTAAA	1 cut(s)	846
EaeI	YGGCCR	1 cut(s)	468
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	202, 870
Eco130I	CCWWGG	1 cut(s)	62
Eco24I	GRGCYC	2 cut(s)	204, 872
Eco47I	GGWCC	1 cut(s)	629
Eco53kI	GAGCTC	2 cut(s)	202, 870
EcoICRI	GAGCTC	2 cut(s)	202, 870
EcoRII	CCWGG	2 cut(s)	139, 219
EcoT14I	CCWWGG	1 cut(s)	62
EcoT38I	GRGCYC	2 cut(s)	204, 872
ErhI	CCWWGG	1 cut(s)	62
FaeI	CATG	3 cut(s)	638, 662, 770
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FatI	CATG	3 cut(s)	634, 658, 766
FauNDI	CATATG	1 cut(s)	718
FbaI	TGATCA	1 cut(s)	429
FblI	GTMKAC	1 cut(s)	83
Fnu4HI	GCNGC	4 cut(s)	93, 102, 177, 311
FokI	GGATG	2 cut(s)	530, 704
FriOI	GRGCYC	2 cut(s)	204, 872
Fsp4HI	GCNGC	4 cut(s)	93, 102, 177, 311
FspBI	CTAG	4 cut(s)	270, 386, 414, 762
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	4 cut(s)	93, 102, 177, 311
GsuI	CTGGAG	1 cut(s)	224
HaeIII	GGCC	1 cut(s)	470
HgaI	GACGC	3 cut(s)	93, 168, 553
HhaI	GCGC	1 cut(s)	148
Hin1I	GRCGYC	2 cut(s)	86, 104
Hin1II	CATG	3 cut(s)	638, 662, 770
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	1 cut(s)	823
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	1 cut(s)	84
Hpy188I	TCNGA	2 cut(s)	199, 822
Hpy188III	TCNNGA	4 cut(s)	241, 545, 735, 839
Hpy8I	GTNNAC	1 cut(s)	84
Hpy99I	CGWCG	4 cut(s)	85, 88, 91, 184
HpyAV	CCTTC	5 cut(s)	84, 438, 515, 595, 749
HpyCH4III	ACNGT	1 cut(s)	861
HpyCH4IV	ACGT	2 cut(s)	86, 349
HpyCH4V	TGCA	3 cut(s)	313, 679, 716
HpyF10VI	GCNNNNNNNGC	6 cut(s)	98, 101, 145, 182, 244, 771
HpyF3I	CTNAG	2 cut(s)	192, 198
HpySE526I	ACGT	2 cut(s)	86, 349
Hsp92I	GRCGYC	2 cut(s)	86, 104
Hsp92II	CATG	3 cut(s)	638, 662, 770
HspAI	GCGC	1 cut(s)	146
Ksp22I	TGATCA	1 cut(s)	429
Kzo9I	GATC	7 cut(s)	168, 388, 429, 758, 769, 783, 787
LmnI	GCTCC	2 cut(s)	7, 243
Lsp1109I	GCAGC	3 cut(s)	79, 163, 297
LweI	GCATC	1 cut(s)	571
MaeI	CTAG	4 cut(s)	270, 386, 414, 762
MaeII	ACGT	2 cut(s)	86, 349
MaeIII	GTNAC	1 cut(s)	855
MalI	GATC	7 cut(s)	170, 390, 431, 760, 771, 785, 789
MboI	GATC	7 cut(s)	168, 388, 429, 758, 769, 783, 787
MboII	GAAGA	2 cut(s)	69, 287
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	1 cut(s)	758
MhlI	GDGCHC	2 cut(s)	204, 872
MluCI	AATT	5 cut(s)	130, 417, 531, 816, 847
MmeI	TCCRAC	3 cut(s)	237, 615, 619
MnlI	CCTC	7 cut(s)	6, 37, 403, 508, 538, 642, 789
MseI	TTAA	2 cut(s)	261, 845
MspR9I	CCNGG	2 cut(s)	141, 221
MunI	CAATTG	1 cut(s)	531
Mva1269I	GAATGC	1 cut(s)	331
MvaI	CCWGG	2 cut(s)	141, 221
MvnI	CGCG	2 cut(s)	564, 774
MwoI	GCNNNNNNNGC	6 cut(s)	98, 101, 145, 182, 244, 771
NdeI	CATATG	1 cut(s)	718
NdeII	GATC	7 cut(s)	168, 388, 429, 758, 769, 783, 787
NlaIII	CATG	3 cut(s)	638, 662, 770
NlaIV	GGNNCC	1 cut(s)	526
NmeAIII	GCCGAG	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	1 cut(s)	346
PctI	GAATGC	1 cut(s)	331
PfeI	GAWTC	1 cut(s)	823
PflMI	CCANNNNNTGG	1 cut(s)	226
PkrI	GCNGC	4 cut(s)	94, 103, 178, 312
PsiI	TTATAA	1 cut(s)	780
Psp124BI	GAGCTC	2 cut(s)	204, 872
Psp6I	CCWGG	2 cut(s)	139, 219
PspGI	CCWGG	2 cut(s)	139, 219
PspN4I	GGNNCC	1 cut(s)	526
PspPI	GGNCC	1 cut(s)	629
PsuI	RGATCY	1 cut(s)	758
RsaI	GTAC	4 cut(s)	164, 320, 499, 554
RsaNI	GTAC	4 cut(s)	163, 319, 498, 553
SacI	GAGCTC	2 cut(s)	204, 872
SalI	GTCGAC	1 cut(s)	82
SaqAI	TTAA	2 cut(s)	261, 845
SatI	GCNGC	4 cut(s)	93, 102, 177, 311
Sau3AI	GATC	7 cut(s)	168, 388, 429, 758, 769, 783, 787
Sau96I	GGNCC	1 cut(s)	629
ScaI	AGTACT	1 cut(s)	320
ScrFI	CCNGG	2 cut(s)	141, 221
SduI	GDGCHC	2 cut(s)	204, 872
SfaNI	GCATC	1 cut(s)	571
SgrDI	CGTCGACG	1 cut(s)	82
SinI	GGWCC	1 cut(s)	629
SmiI	ATTTAAAT	1 cut(s)	846
Sse9I	AATT	5 cut(s)	130, 417, 531, 816, 847
SsiI	CCGC	5 cut(s)	5, 95, 101, 160, 562
SspMI	CTAG	4 cut(s)	270, 386, 414, 762
SstI	GAGCTC	2 cut(s)	204, 872
StyD4I	CCNGG	2 cut(s)	139, 219
StyI	CCWWGG	1 cut(s)	62
SwaI	ATTTAAAT	1 cut(s)	846
TaaI	ACNGT	1 cut(s)	861
TaiI	ACGT	2 cut(s)	89, 352
TaqI	TCGA	7 cut(s)	57, 83, 114, 167, 323, 786, 794
TasI	AATT	5 cut(s)	130, 417, 531, 816, 847
TatI	WGTACW	2 cut(s)	318, 552
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	1 cut(s)	823
Tru1I	TTAA	2 cut(s)	261, 845
Tru9I	TTAA	2 cut(s)	261, 845
TscAI	CASTG	2 cut(s)	55, 432
TseI	GCWGC	3 cut(s)	92, 176, 310
TspDTI	ATGAA	1 cut(s)	534
TspGWI	ACGGA	1 cut(s)	843
TspRI	CASTG	2 cut(s)	55, 432
Van91I	CCANNNNNTGG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	629
XapI	RAATTY	2 cut(s)	417, 847
XmiI	GTMKAC	1 cut(s)	83
XspI	CTAG	4 cut(s)	270, 386, 414, 762
ZraI	GACGTC	1 cut(s)	87
ZrmI	AGTACT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.