Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

24857306 .. 24858348

Gene Structure 1043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAAAGGCCAGACGGGCGTAGGTTTAACATTTAGAAGTTTGTTAATTAGGCTTCATATGTATATTATCATTGCTAGGTTGATTGAGCCGTGGCTGAAGAAACAAAGCCGCCAAAGGATGGATGGTCGAGAGTACAGACAATCTCCTGCTGACAGAAAAAAGCTCGACGGGCTTTACGAGTGCATACTTTGTGCTTGTTGTACTACCTCACGCCCATCTTACTGGTGGAAACCAAAGGAGTTTCTTGGACCAGCTGCATTGCTCCATGCCTATCGATGGATCGTTGATAGTCGAGACGAGTTTACTGAGCCACGATTGCAGGCATTGACAGAAGACCGCACAAGGCTATATAGATTGACTCTTCGAGCTATTTTGTTCTGTAAGAAATACAATGATAGTTGTTCAAGAGCTGTGCTCTGTGTGTTTCTTCTCTCTCTGATTTCATCTTCAAACCTTTTCAGAATATTTGTCTCAAATCTTGTTAGACTTGCCGAGTTCGATCTAAAACTTCTGGGCGTTGTTTCTACGAGTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000104 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016627 GO:0017144 GO:0019637 GO:0019693 GO:0022900 GO:0022904 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045273 GO:0045281 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer2_3 Fer4_17 Fer4_8

Protein Analysis

179

Amino Acids

20.72

Weight (kDa)

9.74

Isoelectric Point (pI)

53.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	118
AciI	CCGC	2 cut(s)	109, 337
AclWI	GGATC	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	116
AfaI	GTAC	2 cut(s)	134, 202
AfiI	CCNNNNNNNGG	2 cut(s)	118, 276
AgsI	TTSAA	2 cut(s)	405, 450
AluBI	AGCT	4 cut(s)	163, 254, 368, 410
AluI	AGCT	4 cut(s)	163, 254, 368, 410
Alw21I	GWGCWC	1 cut(s)	417
Alw26I	GTCTC	2 cut(s)	288, 475
AlwI	GGATC	1 cut(s)	287
AoxI	GGCC	1 cut(s)	7
ApeKI	GCWGC	1 cut(s)	254
AspS9I	GGNCC	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	417
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	4 cut(s)	112, 116, 223, 270
BceAI	ACGGC	1 cut(s)	73
BcoDI	GTCTC	2 cut(s)	288, 475
BfaI	CTAG	1 cut(s)	75
BglI	GCCNNNNNGGC	1 cut(s)	15
BisI	GCNGC	2 cut(s)	109, 255
BlsI	GCNGC	2 cut(s)	110, 256
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	248
BpiI	GAAGAC	1 cut(s)	339
BplI	GAGNNNNNCTC	2 cut(s)	399, 431
Bsa29I	ATCGAT	1 cut(s)	274
BsaJI	CCNNGG	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 276
Bse1I	ACTGG	1 cut(s)	227
Bse3DI	GCAATG	2 cut(s)	69, 257
BseCI	ATCGAT	1 cut(s)	274
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	2 cut(s)	123, 127
BseLI	CCNNNNNNNGG	2 cut(s)	118, 276
BseMI	GCAATG	2 cut(s)	69, 257
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	227
BseXI	GCAGC	1 cut(s)	241
BshFI	GGCC	1 cut(s)	9
BshVI	ATCGAT	1 cut(s)	274
BsiHKAI	GWGCWC	1 cut(s)	417
BslI	CCNNNNNNNGG	2 cut(s)	118, 276
BsmAI	GTCTC	2 cut(s)	288, 475
BsmBI	CGTCTC	1 cut(s)	288
BsnI	GGCC	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	417
Bsp143I	GATC	2 cut(s)	279, 499
BspACI	CCGC	2 cut(s)	109, 337
BspANI	GGCC	1 cut(s)	9
BspCNI	CTCAG	1 cut(s)	298
BspDI	ATCGAT	1 cut(s)	274
BspPI	GGATC	1 cut(s)	287
BsrDI	GCAATG	2 cut(s)	69, 257
BsrI	ACTGG	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	89
BssMI	GATC	2 cut(s)	279, 499
Bst6I	CTCTTC	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	1 cut(s)	306
BstDSI	CCRYGG	1 cut(s)	89
BstF5I	GGATG	2 cut(s)	123, 127
BstKTI	GATC	2 cut(s)	282, 502
BstMAI	GTCTC	2 cut(s)	288, 475
BstMBI	GATC	2 cut(s)	279, 499
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 169, 316
BstV1I	GCAGC	1 cut(s)	241
BstV2I	GAAGAC	1 cut(s)	339
BstXI	CCANNNNNNTGG	1 cut(s)	222
Bsu15I	ATCGAT	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	9
BsuTUI	ATCGAT	1 cut(s)	274
BtgI	CCRYGG	1 cut(s)	89
BtsCI	GGATG	2 cut(s)	123, 127
Cac8I	GCNNGC	1 cut(s)	321
Cfr13I	GGNCC	1 cut(s)	248
ClaI	ATCGAT	1 cut(s)	274
Csp6I	GTAC	2 cut(s)	133, 201
CviAII	CATG	1 cut(s)	266
CviQI	GTAC	2 cut(s)	133, 201
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	2 cut(s)	281, 501
DpnII	GATC	2 cut(s)	279, 499
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco47I	GGWCC	1 cut(s)	248
Eco57I	CTGAAG	1 cut(s)	116
Esp3I	CGTCTC	1 cut(s)	288
FaeI	CATG	1 cut(s)	269
FaiI	YATR	7 cut(s)	57, 59, 63, 185, 267, 349, 351
FatI	CATG	1 cut(s)	265
FauNDI	CATATG	1 cut(s)	57
Fnu4HI	GCNGC	2 cut(s)	109, 255
FokI	GGATG	2 cut(s)	130, 134
Fsp4HI	GCNGC	2 cut(s)	109, 255
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	2 cut(s)	109, 255
HaeIII	GGCC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	269
HinfI	GANTC	1 cut(s)	358
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	2 cut(s)	438, 461
Hpy188III	TCNNGA	3 cut(s)	128, 293, 405
Hpy8I	GTNNAC	1 cut(s)	303
Hpy99I	CGWCG	1 cut(s)	170
HpyCH4V	TGCA	3 cut(s)	183, 257, 319
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 169, 316
HpyF3I	CTNAG	1 cut(s)	306
Hsp92II	CATG	1 cut(s)	269
Kzo9I	GATC	2 cut(s)	279, 499
LmnI	GCTCC	1 cut(s)	267
LpnPI	CCDG	6 cut(s)	23, 159, 208, 264, 305, 497
Lsp1109I	GCAGC	1 cut(s)	241
MaeI	CTAG	1 cut(s)	75
MalI	GATC	2 cut(s)	281, 501
MboI	GATC	2 cut(s)	279, 499
MboII	GAAGA	5 cut(s)	109, 344, 353, 419, 438
MhlI	GDGCHC	1 cut(s)	417
MluCI	AATT	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	352
MnlI	CCTC	1 cut(s)	217
MseI	TTAA	2 cut(s)	26, 44
MspA1I	CMGCKG	1 cut(s)	254
MwoI	GCNNNNNNNGC	3 cut(s)	15, 169, 316
NdeI	CATATG	1 cut(s)	57
NdeII	GATC	2 cut(s)	279, 499
NlaIII	CATG	1 cut(s)	269
NmeAIII	GCCGAG	1 cut(s)	517
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PflMI	CCANNNNNTGG	1 cut(s)	118
PkrI	GCNGC	2 cut(s)	110, 256
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
PspPI	GGNCC	1 cut(s)	248
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	2 cut(s)	134, 202
RsaNI	GTAC	2 cut(s)	133, 201
SaqAI	TTAA	2 cut(s)	26, 44
SatI	GCNGC	2 cut(s)	109, 255
Sau3AI	GATC	2 cut(s)	279, 499
Sau96I	GGNCC	1 cut(s)	248
SchI	GAGTC	1 cut(s)	352
SduI	GDGCHC	1 cut(s)	417
SetI	ASST	8 cut(s)	25, 80, 165, 209, 256, 370, 412, 456
SinI	GGWCC	1 cut(s)	248
Sse9I	AATT	1 cut(s)	45
SsiI	CCGC	2 cut(s)	109, 337
SspI	AATATT	1 cut(s)	465
SspMI	CTAG	1 cut(s)	75
TaqI	TCGA	6 cut(s)	127, 165, 274, 292, 364, 498
TasI	AATT	1 cut(s)	45
TatI	WGTACW	2 cut(s)	132, 200
TauI	GCSGC	1 cut(s)	111
Tru1I	TTAA	2 cut(s)	26, 44
Tru9I	TTAA	2 cut(s)	26, 44
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	3 cut(s)	17, 44, 432
Van91I	CCANNNNNTGG	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	248
XcmI	CCANNNNNNNNNTGG	2 cut(s)	119, 222
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.