pycom15g28870

peptidyl-tRNA hydrolase 2, mitochondrial-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
25259596 .. 25260196
601 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 324 bp
ATGCTGATGGGGTTGGGATGGGTGGGTGCGATTTTGGTAGGAGTTGGTTGGCTTGCTTTGGGGTATTGCTTTGGCGTGCATTACCCTCCTGCTCACATTATTTTCTTAGCTAGACACGCTAAGCAAGCTGCACTTGCCAATGATTCTAATAATGGAAAGAATAAGACGAAGAAGAATAAGCAGAACAAGGACAAGCCCAAAGACCTTCTAGAGATTGAAAACCTCGCCGACATTCTTGAAGATTTCAAAATGGTTTTGGTGGTCAGGAATGATATAAAGATGGGTAAAGGGAAAATTGCCGCTCAATCAGCCATGCGACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

11.79

Weight (kDa)

9.72

Isoelectric Point (pI)

46.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTH2 PF01981 82 - 104 1.5e-06 Peptidyl-tRNA hydrolase PTH2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 302
AciI CCGC 1 cut(s) 300
AgsI TTSAA 3 cut(s) 218, 239, 247
AluBI AGCT 2 cut(s) 110, 128
AluI AGCT 2 cut(s) 110, 128
ApeKI GCWGC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 115
BccI CCATC 2 cut(s) 12, 274
BfaI CTAG 2 cut(s) 111, 209
BisI GCNGC 2 cut(s) 129, 300
BlpI GCTNAGC 1 cut(s) 120
BlsI GCNGC 2 cut(s) 130, 301
Bpu1102I GCTNAGC 1 cut(s) 120
BseGI GGATG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 115
BsgI GTGCAG 1 cut(s) 114
Bsp1720I GCTNAGC 1 cut(s) 120
BspACI CCGC 1 cut(s) 300
BsrBI CCGCTC 1 cut(s) 302
BstC8I GCNNGC 3 cut(s) 54, 77, 126
BstDEI CTNAG 2 cut(s) 106, 120
BstF5I GGATG 1 cut(s) 23
BstMWI GCNNNNNNNGC 4 cut(s) 116, 125, 134, 308
BstV1I GCAGC 1 cut(s) 115
BtsCI GGATG 1 cut(s) 23
Cac8I GCNNGC 3 cut(s) 54, 77, 126
CviAII CATG 1 cut(s) 313
CviJI RGCY 5 cut(s) 52, 110, 128, 196, 311
CviKI_1 RGCY 5 cut(s) 52, 110, 128, 196, 311
DdeI CTNAG 2 cut(s) 106, 120
FaeI CATG 1 cut(s) 316
FaiI YATR 2 cut(s) 275, 314
FalI AAGNNNNNCTT 2 cut(s) 117, 149
FatI CATG 1 cut(s) 312
Fnu4HI GCNGC 2 cut(s) 129, 300
FokI GGATG 1 cut(s) 30
Fsp4HI GCNGC 2 cut(s) 129, 300
FspBI CTAG 2 cut(s) 111, 209
GluI GCNGC 2 cut(s) 129, 300
Hin1II CATG 1 cut(s) 316
HinfI GANTC 1 cut(s) 143
Hpy188III TCNNGA 3 cut(s) 209, 236, 265
HpyAV CCTTC 1 cut(s) 215
HpyCH4V TGCA 2 cut(s) 79, 131
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 125, 134, 308
HpyF3I CTNAG 2 cut(s) 106, 120
Hsp92II CATG 1 cut(s) 316
LpnPI CCDG 2 cut(s) 102, 250
Lsp1109I GCAGC 1 cut(s) 115
MaeI CTAG 2 cut(s) 111, 209
MbiI CCGCTC 1 cut(s) 302
MboII GAAGA 3 cut(s) 181, 184, 251
MluCI AATT 1 cut(s) 294
MnlI CCTC 2 cut(s) 96, 233
MwoI GCNNNNNNNGC 4 cut(s) 116, 125, 134, 308
NlaIII CATG 1 cut(s) 316
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 2 cut(s) 130, 301
SatI GCNGC 2 cut(s) 129, 300
SetI ASST 4 cut(s) 112, 130, 207, 225
Sse9I AATT 1 cut(s) 294
SsiI CCGC 1 cut(s) 300
SspMI CTAG 2 cut(s) 111, 209
TasI AATT 1 cut(s) 294
TauI GCSGC 1 cut(s) 302
TfiI GAWTC 1 cut(s) 143
TseI GCWGC 1 cut(s) 128
XbaI TCTAGA 1 cut(s) 208
XspI CTAG 2 cut(s) 111, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.