Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

25695329 .. 25696414

Gene Structure 1086 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGACCTTAATTTTGCAAGTAGGCGAACACTTGAAGCTCCAAAGCATATTTCTTGGTGGAAAAGGAACTTGTCCTTCGGCGAGTACGGCTCTTATAGGTGAACCATACGTAAGATGTATACCCTCGAATTGCTTAGCGCCCATCAGTTCTTTCAAATCGATGAGGAAAGAAGAGCTTGCCCTTTTGATTAACTTTATTCAAGAGGCTGCTTGCGGTCGTCTTACTGTCGATCTCAGTGCCAAGCTTTCGTCTCTCAGAGCAGATATTAGTTGCCTGATGGTGTTTGGGAAGGAGTACAAGGACCAAGAAATGGATGAGAGGGTTTTCAAGGCTGTGGTACAAGAGGGCATGCATTTAGTTGCCACCCCTAACTTTGGTGATTACATCCCTGGTCTTGCTCAACTGACCTCCAGGGTGCTTATTCTGGACAACAATTTCGTTGCAGGACTGGCTCGCAGGATGGGCACTACAGCAACAGCAACTGAGTGGACACTCTTTGAACTCATCAAGCATCCGCAGGTGATGAAGAGGGTCCAGAAGGAGATAGAAAATGTAGTCGGCATGGAGAGAATGGTGGAGGAATCAGACCTGAAGAAGTTGGAGTATTTGGACATGGTATTGAAGGAAACAGTGAGGCTTCATCCAGTGGCACCATTGCTGCTTCTCCACTCAGCCATCGAGGACTGCAACGCTAATGGCTTCCACATACCCGGAAAATCCCGTGTTATGATCAACATATGGGCAATTGGGAGGGATCCTAATGTCTGGACTGATGCAGGAAAGTTTGTACCGGAAAGGTTTGATGGAAGAAGTATAGATTTCTGCGGACGTGACTTTCATTTTATTCCGTTTGGCTCCGGTCGAAGAGGTTGCCCCGCAATGCAGTTAGGCATAACGATGGTACAGCTATTGGCGGCACAACTTGTGCATTGTTTTGATTGGGAACTTCCAAATAATATGTTGCCAACTGAGTTGGACATGAAGGAGGAGTTCGATCTAACATTTCTACTTATCGCCTTCGTCAGCTCAGCAGATATATATCTATATATATATATATATATATATATATATATAATTTTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

362

Amino Acids

40.71

Weight (kDa)

5.68

Isoelectric Point (pI)

36.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	154 - 325	7.1e-56	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	508
Acc36I	ACCTGC	1 cut(s)	508
AccB1I	GGYRCC	1 cut(s)	649
AccB7I	CCANNNNNTGG	1 cut(s)	310
AccI	GTMKAC	1 cut(s)	118
AciI	CCGC	5 cut(s)	213, 515, 825, 876, 914
AclWI	GGATC	2 cut(s)	749, 762
AcuI	CTGAAG	1 cut(s)	611
AfaI	GTAC	5 cut(s)	85, 296, 339, 789, 903
AfiI	CCNNNNNNNGG	2 cut(s)	310, 374
AgsI	TTSAA	7 cut(s)	34, 154, 200, 328, 500, 622, 1081
AjiI	CACGTC	1 cut(s)	830
AjnI	CCWGG	2 cut(s)	388, 410
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 65
AluBI	AGCT	5 cut(s)	37, 175, 244, 907, 1026
AluI	AGCT	5 cut(s)	37, 175, 244, 907, 1026
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	2 cut(s)	749, 762
AlwNI	CAGNNNCTG	1 cut(s)	482
ApeKI	GCWGC	2 cut(s)	206, 658
ArsI	GACNNNNNNTTYG	3 cut(s)	27, 419, 451
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	2 cut(s)	301, 532
AsuC2I	CCSGG	1 cut(s)	711
AsuHPI	GGTGA	3 cut(s)	110, 389, 532
AvaII	GGWCC	2 cut(s)	301, 532
BaeGI	GKGCMC	1 cut(s)	467
BamHI	GGATCC	1 cut(s)	754
BanI	GGYRCC	1 cut(s)	649
BbvI	GCAGC	2 cut(s)	193, 645
BccI	CCATC	6 cut(s)	149, 271, 454, 683, 797, 892
BceAI	ACGGC	1 cut(s)	102
BcgI	CGANNNNNNTGC	4 cut(s)	218, 252, 852, 886
BciT130I	CCWGG	2 cut(s)	390, 412
BclI	TGATCA	1 cut(s)	729
BcnI	CCSGG	1 cut(s)	711
BcoDI	GTCTC	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	468
BfoI	RGCGCY	1 cut(s)	140
BfuAI	ACCTGC	1 cut(s)	508
BisI	GCNGC	3 cut(s)	207, 659, 915
BlpI	GCTNAGC	2 cut(s)	133, 1027
BlsI	GCNGC	3 cut(s)	208, 660, 916
Bme1390I	CCNGG	3 cut(s)	390, 412, 711
Bme18I	GGWCC	2 cut(s)	301, 532
BmgBI	CACGTC	1 cut(s)	830
BmgT120I	GGNCC	2 cut(s)	301, 532
BmiI	GGNNCC	4 cut(s)	533, 651, 756, 856
BmrFI	CCNGG	3 cut(s)	390, 412, 711
BmsI	GCATC	2 cut(s)	520, 763
BplI	GAGNNNNNCTC	2 cut(s)	73, 105
BpmI	CTGGAG	1 cut(s)	394
Bpu1102I	GCTNAGC	2 cut(s)	133, 1027
BpuMI	CCSGG	1 cut(s)	711
Bsa29I	ATCGAT	1 cut(s)	158
BsaAI	YACGTR	1 cut(s)	109
BsaBI	GATNNNNATC	1 cut(s)	1038
BsaJI	CCNNGG	2 cut(s)	388, 411
BsaWI	WCCGGW	2 cut(s)	790, 857
Bsc4I	CCNNNNNNNGG	2 cut(s)	310, 374
Bse1I	ACTGG	2 cut(s)	453, 644
Bse3DI	GCAATG	2 cut(s)	653, 885
Bse8I	GATNNNNATC	1 cut(s)	1038
BseBI	CCWGG	2 cut(s)	390, 412
BseCI	ATCGAT	1 cut(s)	158
BseDI	CCNNGG	2 cut(s)	388, 411
BseGI	GGATG	5 cut(s)	319, 384, 465, 511, 640
BseJI	GATNNNNATC	1 cut(s)	1038
BseLI	CCNNNNNNNGG	2 cut(s)	310, 374
BseMI	GCAATG	2 cut(s)	653, 885
BseMII	CTCAG	6 cut(s)	247, 268, 474, 684, 960, 1041
BseNI	ACTGG	2 cut(s)	453, 644
BseRI	GAGGAG	1 cut(s)	1001
BseSI	GKGCMC	1 cut(s)	467
BseXI	GCAGC	2 cut(s)	193, 645
Bsh1285I	CGRYCG	2 cut(s)	217, 862
BshNI	GGYRCC	1 cut(s)	649
BshVI	ATCGAT	1 cut(s)	158
BsiEI	CGRYCG	2 cut(s)	217, 862
BsiSI	CCGG	3 cut(s)	711, 791, 858
BslI	CCNNNNNNNGG	2 cut(s)	310, 374
BsmAI	GTCTC	1 cut(s)	255
BsmBI	CGTCTC	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	467
Bsp143I	GATC	4 cut(s)	229, 729, 754, 994
Bsp1720I	GCTNAGC	2 cut(s)	133, 1027
BspACI	CCGC	5 cut(s)	213, 515, 825, 876, 914
BspCNI	CTCAG	6 cut(s)	246, 267, 475, 683, 961, 1040
BspDI	ATCGAT	1 cut(s)	158
BspLI	GGNNCC	4 cut(s)	533, 651, 756, 856
BspMI	ACCTGC	1 cut(s)	508
BspPI	GGATC	2 cut(s)	749, 762
BspQI	GCTCTTC	1 cut(s)	165
BspT107I	GGYRCC	1 cut(s)	649
BsrDI	GCAATG	2 cut(s)	653, 885
BsrI	ACTGG	2 cut(s)	453, 644
BssECI	CCNNGG	2 cut(s)	388, 411
BssMI	GATC	4 cut(s)	229, 729, 754, 994
BssNAI	GTATAC	1 cut(s)	119
Bst1107I	GTATAC	1 cut(s)	119
Bst2UI	CCWGG	2 cut(s)	390, 412
Bst4CI	ACNGT	2 cut(s)	226, 631
Bst6I	CTCTTC	3 cut(s)	165, 521, 859
BstBAI	YACGTR	1 cut(s)	109
BstC8I	GCNNGC	4 cut(s)	177, 211, 350, 454
BstDEI	CTNAG	7 cut(s)	133, 233, 254, 483, 670, 969, 1027
BstF5I	GGATG	5 cut(s)	319, 384, 465, 511, 640
BstH2I	RGCGCY	1 cut(s)	140
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	4 cut(s)	232, 732, 757, 997
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	4 cut(s)	229, 729, 754, 994
BstMCI	CGRYCG	2 cut(s)	217, 862
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 449, 462
BstNI	CCWGG	2 cut(s)	390, 412
BstNSI	RCATGY	1 cut(s)	352
BstSCI	CCNGG	3 cut(s)	388, 410, 709
BstSFI	CTRYAG	1 cut(s)	468
BstSLI	GKGCMC	1 cut(s)	467
BstSNI	TACGTA	1 cut(s)	109
BstV1I	GCAGC	2 cut(s)	193, 645
BstX2I	RGATCY	1 cut(s)	754
BstYI	RGATCY	1 cut(s)	754
BstZ17I	GTATAC	1 cut(s)	119
Bsu15I	ATCGAT	1 cut(s)	158
BsuTUI	ATCGAT	1 cut(s)	158
BtrI	CACGTC	1 cut(s)	830
BtsCI	GGATG	5 cut(s)	319, 384, 465, 511, 640
BtsIMutI	CAGTG	3 cut(s)	241, 636, 651
BveI	ACCTGC	1 cut(s)	508
Cac8I	GCNNGC	4 cut(s)	177, 211, 350, 454
CaiI	CAGNNNCTG	1 cut(s)	482
CfoI	GCGC	1 cut(s)	139
Cfr13I	GGNCC	2 cut(s)	301, 532
ClaI	ATCGAT	1 cut(s)	158
Csp6I	GTAC	5 cut(s)	84, 295, 338, 788, 902
CviAII	CATG	4 cut(s)	349, 562, 613, 979
CviQI	GTAC	5 cut(s)	84, 295, 338, 788, 902
DdeI	CTNAG	7 cut(s)	133, 233, 254, 483, 670, 969, 1027
DpnI	GATC	4 cut(s)	231, 731, 756, 996
DpnII	GATC	4 cut(s)	229, 729, 754, 994
Eam1104I	CTCTTC	3 cut(s)	165, 521, 859
EarI	CTCTTC	3 cut(s)	165, 521, 859
Eco105I	TACGTA	1 cut(s)	109
Eco47I	GGWCC	2 cut(s)	301, 532
Eco57I	CTGAAG	1 cut(s)	611
EcoRII	CCWGG	2 cut(s)	388, 410
EcoT22I	ATGCAT	1 cut(s)	354
Esp3I	CGTCTC	1 cut(s)	255
FaeI	CATG	4 cut(s)	352, 565, 616, 982
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FatI	CATG	4 cut(s)	348, 561, 612, 978
FauI	CCCGC	1 cut(s)	883
FauNDI	CATATG	1 cut(s)	737
FbaI	TGATCA	1 cut(s)	729
FblI	GTMKAC	1 cut(s)	118
Fnu4HI	GCNGC	3 cut(s)	207, 659, 915
FokI	GGATG	5 cut(s)	326, 371, 472, 498, 627
Fsp4HI	GCNGC	3 cut(s)	207, 659, 915
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	3 cut(s)	207, 659, 915
GsuI	CTGGAG	1 cut(s)	394
HaeII	RGCGCY	1 cut(s)	140
HapII	CCGG	3 cut(s)	711, 791, 858
HhaI	GCGC	1 cut(s)	139
Hin1II	CATG	4 cut(s)	352, 565, 616, 982
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	1 cut(s)	581
HpaII	CCGG	3 cut(s)	711, 791, 858
HphI	GGTGA	3 cut(s)	110, 389, 532
Hpy166II	GTNNAC	3 cut(s)	101, 119, 489
Hpy188I	TCNGA	2 cut(s)	257, 586
Hpy188III	TCNNGA	4 cut(s)	200, 425, 535, 766
Hpy8I	GTNNAC	3 cut(s)	101, 119, 489
HpyAV	CCTTC	6 cut(s)	84, 283, 532, 616, 976, 1027
HpyCH4III	ACNGT	2 cut(s)	226, 631
HpyCH4IV	ACGT	2 cut(s)	108, 829
HpyCH4V	TGCA	7 cut(s)	16, 352, 443, 687, 776, 883, 928
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 449, 462
HpyF3I	CTNAG	7 cut(s)	133, 233, 254, 483, 670, 969, 1027
HpySE526I	ACGT	2 cut(s)	108, 829
Hsp92II	CATG	4 cut(s)	352, 565, 616, 982
HspAI	GCGC	1 cut(s)	137
Ksp22I	TGATCA	1 cut(s)	729
Kzo9I	GATC	4 cut(s)	229, 729, 754, 994
LguI	GCTCTTC	1 cut(s)	165
LmnI	GCTCC	2 cut(s)	42, 860
Lsp1109I	GCAGC	2 cut(s)	193, 645
LweI	GCATC	2 cut(s)	520, 763
MaeII	ACGT	2 cut(s)	108, 829
MaeIII	GTNAC	1 cut(s)	830
MalI	GATC	4 cut(s)	231, 731, 756, 996
MboI	GATC	4 cut(s)	229, 729, 754, 994
MboII	GAAGA	5 cut(s)	182, 538, 604, 819, 876
MfeI	CAATTG	1 cut(s)	744
MflI	RGATCY	1 cut(s)	754
MhlI	GDGCHC	1 cut(s)	467
MluCI	AATT	6 cut(s)	9, 127, 433, 744, 1074, 1081
MmeI	TCCRAC	2 cut(s)	579, 954
Mph1103I	ATGCAT	1 cut(s)	354
MseI	TTAA	3 cut(s)	8, 189, 1084
MslI	CAYNNNNRTG	1 cut(s)	896
MspI	CCGG	3 cut(s)	711, 791, 858
MspR9I	CCNGG	3 cut(s)	390, 412, 711
MunI	CAATTG	1 cut(s)	744
MvaI	CCWGG	2 cut(s)	390, 412
MwoI	GCNNNNNNNGC	3 cut(s)	86, 449, 462
NciI	CCSGG	1 cut(s)	711
NdeI	CATATG	1 cut(s)	737
NdeII	GATC	4 cut(s)	229, 729, 754, 994
NlaIII	CATG	4 cut(s)	352, 565, 616, 982
NlaIV	GGNNCC	4 cut(s)	533, 651, 756, 856
NmuCI	GTSAC	1 cut(s)	830
NsiI	ATGCAT	1 cut(s)	354
NspI	RCATGY	1 cut(s)	352
PaeI	GCATGC	1 cut(s)	352
PaqCI	CACCTGC	1 cut(s)	508
PciSI	GCTCTTC	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	581
PflMI	CCANNNNNTGG	1 cut(s)	310
PkrI	GCNGC	3 cut(s)	208, 660, 916
Ppu21I	YACGTR	1 cut(s)	109
Psp6I	CCWGG	2 cut(s)	388, 410
PspGI	CCWGG	2 cut(s)	388, 410
PspN4I	GGNNCC	4 cut(s)	533, 651, 756, 856
PspPI	GGNCC	2 cut(s)	301, 532
PstNI	CAGNNNCTG	1 cut(s)	482
PsuI	RGATCY	1 cut(s)	754
RsaI	GTAC	5 cut(s)	85, 296, 339, 789, 903
RsaNI	GTAC	5 cut(s)	84, 295, 338, 788, 902
RseI	CAYNNNNRTG	1 cut(s)	896
SapI	GCTCTTC	1 cut(s)	165
SaqAI	TTAA	3 cut(s)	8, 189, 1084
SatI	GCNGC	3 cut(s)	207, 659, 915
Sau3AI	GATC	4 cut(s)	229, 729, 754, 994
Sau96I	GGNCC	2 cut(s)	301, 532
ScrFI	CCNGG	3 cut(s)	390, 412, 711
SduI	GDGCHC	1 cut(s)	467
SfaNI	GCATC	2 cut(s)	520, 763
SfcI	CTRYAG	1 cut(s)	468
SinI	GGWCC	2 cut(s)	301, 532
SmiMI	CAYNNNNRTG	1 cut(s)	896
SnaBI	TACGTA	1 cut(s)	109
SphI	GCATGC	1 cut(s)	352
Sse9I	AATT	6 cut(s)	9, 127, 433, 744, 1074, 1081
SsiI	CCGC	5 cut(s)	213, 515, 825, 876, 914
StyD4I	CCNGG	3 cut(s)	388, 410, 709
TaaI	ACNGT	2 cut(s)	226, 631
TaiI	ACGT	2 cut(s)	111, 832
TaqI	TCGA	6 cut(s)	125, 158, 228, 678, 862, 993
TasI	AATT	6 cut(s)	9, 127, 433, 744, 1074, 1081
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	1 cut(s)	917
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	3 cut(s)	8, 189, 1084
Tru9I	TTAA	3 cut(s)	8, 189, 1084
TscAI	CASTG	3 cut(s)	241, 636, 651
TseFI	GTSAC	1 cut(s)	830
TseI	GCWGC	2 cut(s)	206, 658
Tsp45I	GTSAC	1 cut(s)	830
TspDTI	ATGAA	4 cut(s)	539, 629, 827, 995
TspGWI	ACGGA	1 cut(s)	837
TspRI	CASTG	3 cut(s)	241, 636, 651
Van91I	CCANNNNNTGG	1 cut(s)	310
VpaK11BI	GGWCC	2 cut(s)	301, 532
XceI	RCATGY	1 cut(s)	352
XmiI	GTMKAC	1 cut(s)	118
Zsp2I	ATGCAT	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.