pycom15g29380

Ras-related protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Reverse (-)
26219116 .. 26221064
1949 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 474 bp
ATGGCCACTTCTCTAGTCTTGGAGCTCGATCAGCAAAAAACTTTTCTTTATTTGTCTTCAACAATAATACAGCCAGCCATGGATACTTCTATGAAAAGAAGAACGCTGCTTAAGGTCATCGTCCTTGGAGATAGTGGATATGTTTATAAGAAGTTCAATCGACAATATAAAGCTACAATTGGTGCAGATTTTGTCACCAAGGAACTTCAGATTGATGACAAATTGGTGACTTTGCAAATTTGGGACACAGCAGGGCAAGAAAGATTTCATAGTCTTGGAGCTGCGTTTTATCGAGGATCAGATTGCTGCGTTCTTGTGTATGATGTGAATGTTAATAAATCATTTGAAGCACTTCAGAACTGGCATGAAGAGTTTCTCAAACAGGTTTCCAAAAACGCTTCTTCATTTTTCCAATTTGTCAGTTCATGGTACTTAATATTTATTTCCGAATATTTTCATTTTCATTTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

158

Amino Acids

18.32

Weight (kDa)

6.96

Isoelectric Point (pI)

30.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 47 - 133 1.4e-29 Ras family
Roc PF08477 47 - 132 1.2e-21 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 147
AclWI GGATC 1 cut(s) 304
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 237
AcuI CTGAAG 2 cut(s) 191, 338
AfaI GTAC 1 cut(s) 431
AflII CTTAAG 1 cut(s) 110
AgsI TTSAA 3 cut(s) 60, 157, 347
AluBI AGCT 3 cut(s) 25, 173, 281
AluI AGCT 3 cut(s) 25, 173, 281
Alw21I GWGCWC 1 cut(s) 27
AlwI GGATC 1 cut(s) 304
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 106, 281, 306
ApoI RAATTY 1 cut(s) 237
Asp700I GAANNNNTTC 4 cut(s) 264, 351, 372, 453
AsuHPI GGTGA 2 cut(s) 187, 238
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 27
BbsI GAAGAC 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 3 cut(s) 93, 268, 293
BciVI GTATCC 1 cut(s) 76
BfaI CTAG 1 cut(s) 14
BfrI CTTAAG 1 cut(s) 110
BfuI GTATCC 1 cut(s) 76
BisI GCNGC 3 cut(s) 107, 282, 307
BlsI GCNGC 3 cut(s) 108, 283, 308
BpiI GAAGAC 1 cut(s) 48
BsaJI CCNNGG 3 cut(s) 78, 124, 198
Bse1I ACTGG 1 cut(s) 365
BseDI CCNNGG 3 cut(s) 78, 124, 198
BseNI ACTGG 1 cut(s) 365
BseXI GCAGC 3 cut(s) 93, 268, 293
BsgI GTGCAG 1 cut(s) 204
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 27
BslFI GGGAC 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 257
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 2 cut(s) 28, 296
Bsp19I CCATGG 1 cut(s) 78
BspANI GGCC 1 cut(s) 5
BspPI GGATC 1 cut(s) 304
BspTI CTTAAG 1 cut(s) 110
BsrI ACTGG 1 cut(s) 365
BssECI CCNNGG 3 cut(s) 78, 124, 198
BssMI GATC 2 cut(s) 28, 296
BssT1I CCWWGG 3 cut(s) 78, 124, 198
Bst6I CTCTTC 1 cut(s) 363
BstAFI CTTAAG 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 75
BstDSI CCRYGG 1 cut(s) 78
BstKTI GATC 2 cut(s) 31, 299
BstMBI GATC 2 cut(s) 28, 296
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstV1I GCAGC 3 cut(s) 93, 268, 293
BstV2I GAAGAC 1 cut(s) 48
BsuI GTATCC 1 cut(s) 76
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 78
Cac8I GCNNGC 1 cut(s) 75
Csp6I GTAC 1 cut(s) 430
CviAII CATG 3 cut(s) 79, 365, 426
CviJI RGCY 6 cut(s) 5, 25, 73, 77, 173, 281
CviKI_1 RGCY 6 cut(s) 5, 25, 73, 77, 173, 281
CviQI GTAC 1 cut(s) 430
DpnI GATC 2 cut(s) 30, 298
DpnII GATC 2 cut(s) 28, 296
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Ecl136II GAGCTC 1 cut(s) 25
Eco130I CCWWGG 3 cut(s) 78, 124, 198
Eco24I GRGCYC 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 25
Eco57I CTGAAG 2 cut(s) 191, 338
EcoICRI GAGCTC 1 cut(s) 25
EcoT14I CCWWGG 3 cut(s) 78, 124, 198
EcoT38I GRGCYC 1 cut(s) 27
ErhI CCWWGG 3 cut(s) 78, 124, 198
FaeI CATG 3 cut(s) 82, 368, 429
FaiI YATR 9 cut(s) 80, 92, 141, 147, 168, 270, 321, 366, 427
FaqI GGGAC 1 cut(s) 257
FatI CATG 3 cut(s) 78, 364, 425
Fnu4HI GCNGC 3 cut(s) 107, 282, 307
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 3 cut(s) 107, 282, 307
FspBI CTAG 1 cut(s) 14
GluI GCNGC 3 cut(s) 107, 282, 307
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 3 cut(s) 82, 368, 429
HphI GGTGA 2 cut(s) 187, 238
Hpy188I TCNGA 4 cut(s) 210, 301, 357, 448
HpyCH4V TGCA 2 cut(s) 185, 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
Hsp92II CATG 3 cut(s) 82, 368, 429
Kzo9I GATC 2 cut(s) 28, 296
LmnI GCTCC 2 cut(s) 22, 278
LpnPI CCDG 4 cut(s) 87, 237, 346, 368
Lsp1109I GCAGC 3 cut(s) 93, 268, 293
MaeI CTAG 1 cut(s) 14
MaeIII GTNAC 2 cut(s) 193, 226
MalI GATC 2 cut(s) 30, 298
MboI GATC 2 cut(s) 28, 296
MboII GAAGA 4 cut(s) 48, 111, 380, 393
MfeI CAATTG 1 cut(s) 177
MhlI GDGCHC 1 cut(s) 27
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 177, 221, 237, 413
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 1 cut(s) 287
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 4 cut(s) 264, 351, 372, 453
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 111, 333, 434, 472
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 110
MunI CAATTG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 31
NcoI CCATGG 1 cut(s) 78
NdeII GATC 2 cut(s) 28, 296
NlaIII CATG 3 cut(s) 82, 368, 429
NmuCI GTSAC 2 cut(s) 193, 226
PdmI GAANNNNTTC 4 cut(s) 264, 351, 372, 453
PkrI GCNGC 3 cut(s) 108, 283, 308
PsiI TTATAA 1 cut(s) 147
Psp124BI GAGCTC 1 cut(s) 27
RsaI GTAC 1 cut(s) 431
RsaNI GTAC 1 cut(s) 430
SacI GAGCTC 1 cut(s) 27
SaqAI TTAA 4 cut(s) 111, 333, 434, 472
SatI GCNGC 3 cut(s) 107, 282, 307
Sau3AI GATC 2 cut(s) 28, 296
SduI GDGCHC 1 cut(s) 27
SetI ASST 5 cut(s) 27, 117, 175, 283, 387
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 4 cut(s) 177, 221, 237, 413
SspI AATATT 2 cut(s) 438, 452
SspMI CTAG 1 cut(s) 14
SstI GAGCTC 1 cut(s) 27
StyI CCWWGG 3 cut(s) 78, 124, 198
TaqI TCGA 3 cut(s) 27, 160, 292
TasI AATT 4 cut(s) 177, 221, 237, 413
Tru1I TTAA 4 cut(s) 111, 333, 434, 472
Tru9I TTAA 4 cut(s) 111, 333, 434, 472
TseFI GTSAC 2 cut(s) 193, 226
TseI GCWGC 3 cut(s) 106, 281, 306
Tsp45I GTSAC 2 cut(s) 193, 226
TspDTI ATGAA 8 cut(s) 107, 257, 381, 393, 414, 446, 452, 458
Vha464I CTTAAG 1 cut(s) 110
XapI RAATTY 1 cut(s) 237
XmnI GAANNNNTTC 4 cut(s) 264, 351, 372, 453
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.