pycom15g29480
BZIP Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Reverse (-)
26325772 .. 26326853
1082 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g29480.1

Sequence Viewer

Length: 516 bp
ATGAGTCACTATTTTGAACTTTTCAGCATGAAATCAACTGCTGCAAAAGCTGACGTTTTCTATGTGATGTCTGGGATGTGGAAAACGTCAGCTGAACGGTTTTTCTCGTGGATTGGAGGGTTTCGCCCTTCAGAACTTCTTAAGGTTCTTCAGCCTCACCTTGACCCGTTGACAGACCAACAACTTTTGGATGTTCACAACCTTAGACAATCATGTCAACAAGCAGAAGATGCTCTTTCTCAAGGTATGGATAAACTCCAGCACACTCTGGCCGAGACTGTGGCAGCTTGTCAACTGGACGAAGGCAGTTATGTCCCGCAGATGGCTAATGCAATGGAGAGATTGGAAGCTCTCGTGAGCTTTGTGACCCAGGCTCGATCATCTTCGGCGGGAGACCTTACAGCAGATGTCACGCATCCTCACAACCCGCCAGGCTGCTCGAGGCCTTGCTGCCTTGGGAGAGTACTTCCATCGCCTTCGGGCTTTGAGCTCACTCTGGGCTACTCGTCCGCGTGA

Protein Analysis

172

Amino Acids

18.77

Weight (kDa)

5.41

Isoelectric Point (pI)

57.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 1 - 51 8.5e-23 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 213
AccII CGCG 1 cut(s) 512
AciI CCGC 4 cut(s) 317, 389, 428, 510
AcoI YGGCCR 1 cut(s) 270
AcuI CTGAAG 2 cut(s) 114, 134
AfaI GTAC 1 cut(s) 465
AfiI CCNNNNNNNGG 1 cut(s) 322
AflII CTTAAG 1 cut(s) 140
AgsI TTSAA 1 cut(s) 17
AjnI CCWGG 2 cut(s) 369, 430
AluBI AGCT 6 cut(s) 50, 92, 287, 350, 360, 490
AluI AGCT 6 cut(s) 50, 92, 287, 350, 360, 490
Alw21I GWGCWC 1 cut(s) 492
Alw26I GTCTC 2 cut(s) 269, 387
Ama87I CYCGRG 1 cut(s) 439
AoxI GGCC 2 cut(s) 270, 443
ApeKI GCWGC 4 cut(s) 41, 284, 435, 450
AsuHPI GGTGA 1 cut(s) 149
AvaI CYCGRG 1 cut(s) 439
BanII GRGCYC 1 cut(s) 492
BauI CACGAG 2 cut(s) 106, 353
Bbv12I GWGCWC 1 cut(s) 492
BbvI GCAGC 4 cut(s) 28, 296, 422, 437
BccI CCATC 2 cut(s) 316, 478
BciT130I CCWGG 2 cut(s) 371, 432
BcoDI GTCTC 2 cut(s) 269, 387
BfrI CTTAAG 1 cut(s) 140
BisI GCNGC 4 cut(s) 42, 285, 436, 451
BlsI GCNGC 4 cut(s) 43, 286, 437, 452
BmcAI AGTACT 1 cut(s) 465
Bme1390I CCNGG 2 cut(s) 371, 432
BmeT110I CYCGRG 1 cut(s) 439
BmrFI CCNGG 2 cut(s) 371, 432
BmsI GCATC 2 cut(s) 220, 424
BpmI CTGGAG 1 cut(s) 242
BpuEI CTTGAG 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 387
BsaJI CCNNGG 2 cut(s) 369, 454
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 300
Bse3DI GCAATG 1 cut(s) 339
BseBI CCWGG 2 cut(s) 371, 432
BseDI CCNNGG 2 cut(s) 369, 454
BseGI GGATG 3 cut(s) 81, 196, 415
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMI GCAATG 1 cut(s) 339
BseNI ACTGG 1 cut(s) 300
BseXI GCAGC 4 cut(s) 28, 296, 422, 437
Bsh1236I CGCG 1 cut(s) 512
BshFI GGCC 2 cut(s) 272, 445
BsiHKAI GWGCWC 1 cut(s) 492
BsiHKCI CYCGRG 1 cut(s) 439
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 2 cut(s) 269, 387
BsmFI GGGAC 1 cut(s) 299
BsnI GGCC 2 cut(s) 272, 445
Bso31I GGTCTC 1 cut(s) 387
BsoBI CYCGRG 1 cut(s) 439
Bsp1286I GDGCHC 1 cut(s) 492
Bsp143I GATC 1 cut(s) 377
BspACI CCGC 4 cut(s) 317, 389, 428, 510
BspANI GGCC 2 cut(s) 272, 445
BspFNI CGCG 1 cut(s) 512
BspTI CTTAAG 1 cut(s) 140
BspTNI GGTCTC 1 cut(s) 387
BsrDI GCAATG 1 cut(s) 339
BsrI ACTGG 1 cut(s) 300
BssECI CCNNGG 2 cut(s) 369, 454
BssMI GATC 1 cut(s) 377
BssSI CACGAG 2 cut(s) 106, 353
BssT1I CCWWGG 1 cut(s) 454
Bst2BI CACGAG 2 cut(s) 106, 353
Bst2UI CCWGG 2 cut(s) 371, 432
Bst4CI ACNGT 2 cut(s) 99, 280
BstAFI CTTAAG 1 cut(s) 140
BstAPI GCANNNNNTGC 1 cut(s) 230
BstDEI CTNAG 1 cut(s) 203
BstF5I GGATG 3 cut(s) 81, 196, 415
BstFNI CGCG 1 cut(s) 512
BstKTI GATC 1 cut(s) 380
BstMAI GTCTC 2 cut(s) 269, 387
BstMBI GATC 1 cut(s) 377
BstMWI GCNNNNNNNGC 2 cut(s) 47, 230
BstNI CCWGG 2 cut(s) 371, 432
BstSCI CCNGG 2 cut(s) 369, 430
BstUI CGCG 1 cut(s) 512
BstV1I GCAGC 4 cut(s) 28, 296, 422, 437
BsuRI GGCC 2 cut(s) 272, 445
BtgZI GCGATG 1 cut(s) 456
BtsCI GGATG 3 cut(s) 81, 196, 415
Csp6I GTAC 1 cut(s) 464
CviAII CATG 2 cut(s) 28, 213
CviQI GTAC 1 cut(s) 464
DdeI CTNAG 1 cut(s) 203
DpnI GATC 1 cut(s) 379
DpnII GATC 1 cut(s) 377
DrdI GACNNNNNNGTC 1 cut(s) 213
DseDI GACNNNNNNGTC 1 cut(s) 213
EaeI YGGCCR 1 cut(s) 270
Ecl136II GAGCTC 1 cut(s) 490
Eco130I CCWWGG 1 cut(s) 454
Eco147I AGGCCT 1 cut(s) 445
Eco24I GRGCYC 1 cut(s) 492
Eco31I GGTCTC 1 cut(s) 387
Eco53kI GAGCTC 1 cut(s) 490
Eco57I CTGAAG 2 cut(s) 114, 134
Eco88I CYCGRG 1 cut(s) 439
EcoICRI GAGCTC 1 cut(s) 490
EcoRII CCWGG 2 cut(s) 369, 430
EcoT14I CCWWGG 1 cut(s) 454
EcoT38I GRGCYC 1 cut(s) 492
ErhI CCWWGG 1 cut(s) 454
FaeI CATG 2 cut(s) 31, 216
FaiI YATR 5 cut(s) 29, 63, 214, 248, 312
FalI AAGNNNNNCTT 2 cut(s) 219, 251
FaqI GGGAC 1 cut(s) 299
FatI CATG 2 cut(s) 27, 212
FauI CCCGC 3 cut(s) 324, 382, 435
Fnu4HI GCNGC 4 cut(s) 42, 285, 436, 451
FokI GGATG 3 cut(s) 88, 203, 402
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 4 cut(s) 42, 285, 436, 451
GluI GCNGC 4 cut(s) 42, 285, 436, 451
GsuI CTGGAG 1 cut(s) 242
HaeIII GGCC 2 cut(s) 272, 445
Hin1II CATG 2 cut(s) 31, 216
HincII GTYRAC 3 cut(s) 171, 218, 293
HindII GTYRAC 3 cut(s) 171, 218, 293
HinfI GANTC 1 cut(s) 4
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 4 cut(s) 171, 196, 218, 293
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 1 cut(s) 355
Hpy8I GTNNAC 4 cut(s) 171, 196, 218, 293
HpyAV CCTTC 3 cut(s) 138, 296, 486
HpyCH4III ACNGT 2 cut(s) 99, 280
HpyCH4IV ACGT 2 cut(s) 54, 86
HpyCH4V TGCA 2 cut(s) 44, 332
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 230
HpyF3I CTNAG 1 cut(s) 203
HpySE526I ACGT 2 cut(s) 54, 86
Hsp92II CATG 2 cut(s) 31, 216
Kzo9I GATC 1 cut(s) 377
LpnPI CCDG 9 cut(s) 57, 254, 272, 281, 356, 383, 417, 444, 482
Lsp1109I GCAGC 4 cut(s) 28, 296, 422, 437
LweI GCATC 2 cut(s) 220, 424
MaeII ACGT 2 cut(s) 54, 86
MaeIII GTNAC 3 cut(s) 5, 364, 409
MalI GATC 1 cut(s) 379
MboI GATC 1 cut(s) 377
MboII GAAGA 3 cut(s) 140, 239, 375
MhlI GDGCHC 1 cut(s) 492
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 4 cut(s) 110, 165, 429, 435
MseI TTAA 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 92
MspCI CTTAAG 1 cut(s) 140
MspR9I CCNGG 2 cut(s) 371, 432
MvaI CCWGG 2 cut(s) 371, 432
MvnI CGCG 1 cut(s) 512
MwoI GCNNNNNNNGC 2 cut(s) 47, 230
NdeII GATC 1 cut(s) 377
NlaIII CATG 2 cut(s) 31, 216
NmeAIII GCCGAG 1 cut(s) 298
NmuCI GTSAC 3 cut(s) 5, 364, 409
PaeR7I CTCGAG 1 cut(s) 439
PceI AGGCCT 1 cut(s) 445
PkrI GCNGC 4 cut(s) 43, 286, 437, 452
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp124BI GAGCTC 1 cut(s) 492
Psp6I CCWGG 2 cut(s) 369, 430
PspGI CCWGG 2 cut(s) 369, 430
PspXI VCTCGAGB 1 cut(s) 439
PvuII CAGCTG 1 cut(s) 92
RsaI GTAC 1 cut(s) 465
RsaNI GTAC 1 cut(s) 464
SacI GAGCTC 1 cut(s) 492
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 4 cut(s) 42, 285, 436, 451
Sau3AI GATC 1 cut(s) 377
ScaI AGTACT 1 cut(s) 465
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 2 cut(s) 371, 432
SduI GDGCHC 1 cut(s) 492
SfaNI GCATC 2 cut(s) 220, 424
Sfr274I CTCGAG 1 cut(s) 439
SlaI CTCGAG 1 cut(s) 439
SmlI CTYRAG 3 cut(s) 140, 240, 439
SmoI CTYRAG 3 cut(s) 140, 240, 439
SseBI AGGCCT 1 cut(s) 445
SsiI CCGC 4 cut(s) 317, 389, 428, 510
SstI GAGCTC 1 cut(s) 492
StuI AGGCCT 1 cut(s) 445
StyD4I CCNGG 2 cut(s) 369, 430
StyI CCWWGG 1 cut(s) 454
TaaI ACNGT 2 cut(s) 99, 280
TaiI ACGT 2 cut(s) 57, 89
TaqI TCGA 2 cut(s) 376, 440
TatI WGTACW 1 cut(s) 463
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseFI GTSAC 3 cut(s) 5, 364, 409
TseI GCWGC 4 cut(s) 41, 284, 435, 450
Tsp45I GTSAC 3 cut(s) 5, 364, 409
TspDTI ATGAA 1 cut(s) 44
Vha464I CTTAAG 1 cut(s) 140
XhoI CTCGAG 1 cut(s) 439
ZrmI AGTACT 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.