pycom15g29870

E3 SUMO-protein ligase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
26986471 .. 26986920
450 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 246 bp
ATGCATTACTTACGGGAAAACAACACACGATGCCCTGTTGCAGCTTGCCCTGTGAAATTGAAGTCAGATAAAGTGAAGGATGATCCATTGTTAGCCGCTGATATTGATGAATTGCGTAAAACGCAGAATCAGAATGCCATGACTGATGTGATGGACGTCACTGAGTTTGAAGAGGTGACCTGGTTTTATGATATTGCATATGTAGTTGAAAGCACCTCCAGTTCCTTCTCTGTTGAATTCTTTTAG
Functional Annotation

Protein Analysis

82

Amino Acids

9.34

Weight (kDa)

4.43

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 159
AciI CCGC 1 cut(s) 96
AclWI GGATC 1 cut(s) 77
AcsI RAATTY 1 cut(s) 236
AcyI GRCGYC 1 cut(s) 156
AgsI TTSAA 4 cut(s) 61, 170, 209, 236
AjnI CCWGG 1 cut(s) 179
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
AlwI GGATC 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 187
BbvI GCAGC 1 cut(s) 53
BccI CCATC 1 cut(s) 145
BciT130I CCWGG 1 cut(s) 181
BisI GCNGC 2 cut(s) 42, 96
BlsI GCNGC 2 cut(s) 43, 97
Bme1390I CCNGG 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 181
BmsI GCATC 1 cut(s) 20
BpmI CTGGAG 1 cut(s) 202
BsaHI GRCGYC 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 219
BseBI CCWGG 1 cut(s) 181
BseGI GGATG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 219
BseXI GCAGC 1 cut(s) 53
BsmI GAATGC 1 cut(s) 139
Bsp143I GATC 1 cut(s) 82
BspACI CCGC 1 cut(s) 96
BspCNI CTCAG 1 cut(s) 154
BspPI GGATC 1 cut(s) 77
BsrI ACTGG 1 cut(s) 219
BssMI GATC 1 cut(s) 82
BssNI GRCGYC 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 165
BstACI GRCGYC 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 1 cut(s) 162
BstEII GGTNACC 1 cut(s) 175
BstF5I GGATG 1 cut(s) 85
BstKTI GATC 1 cut(s) 85
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstNI CCWGG 1 cut(s) 181
BstPI GGTNACC 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 179
BstV1I GCAGC 1 cut(s) 53
BtsCI GGATG 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 46
CsiI ACCWGGT 1 cut(s) 179
CviAII CATG 1 cut(s) 139
CviJI RGCY 2 cut(s) 44, 95
CviKI_1 RGCY 2 cut(s) 44, 95
DdeI CTNAG 1 cut(s) 162
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Eco91I GGTNACC 1 cut(s) 175
EcoO65I GGTNACC 1 cut(s) 175
EcoRI GAATTC 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 179
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 142
FaiI YATR 4 cut(s) 140, 189, 199, 201
FatI CATG 1 cut(s) 138
FauNDI CATATG 1 cut(s) 199
Fnu4HI GCNGC 2 cut(s) 42, 96
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 2 cut(s) 42, 96
GluI GCNGC 2 cut(s) 42, 96
GsuI CTGGAG 1 cut(s) 202
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 1 cut(s) 142
HinfI GANTC 1 cut(s) 127
HphI GGTGA 1 cut(s) 187
Hpy188I TCNGA 2 cut(s) 67, 132
HpyAV CCTTC 2 cut(s) 70, 235
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 3 cut(s) 4, 41, 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 1 cut(s) 156
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 1 cut(s) 142
Kzo9I GATC 1 cut(s) 82
LpnPI CCDG 5 cut(s) 48, 63, 166, 193, 232
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 1 cut(s) 20
MabI ACCWGGT 1 cut(s) 179
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 2 cut(s) 157, 175
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 1 cut(s) 182
MluCI AATT 3 cut(s) 56, 110, 236
MnlI CCTC 2 cut(s) 166, 226
Mph1103I ATGCAT 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 181
Mva1269I GAATGC 1 cut(s) 139
MvaI CCWGG 1 cut(s) 181
MwoI GCNNNNNNNGC 1 cut(s) 121
NdeI CATATG 1 cut(s) 199
NdeII GATC 1 cut(s) 82
NlaIII CATG 1 cut(s) 142
NmuCI GTSAC 2 cut(s) 157, 175
NsiI ATGCAT 1 cut(s) 6
PctI GAATGC 1 cut(s) 139
PfeI GAWTC 1 cut(s) 127
PkrI GCNGC 2 cut(s) 43, 97
Psp6I CCWGG 1 cut(s) 179
PspEI GGTNACC 1 cut(s) 175
PspGI CCWGG 1 cut(s) 179
SatI GCNGC 2 cut(s) 42, 96
Sau3AI GATC 1 cut(s) 82
ScrFI CCNGG 1 cut(s) 181
SetI ASST 5 cut(s) 46, 159, 177, 182, 218
SexAI ACCWGGT 1 cut(s) 179
SfaNI GCATC 1 cut(s) 20
SgeI CNNG 9 cut(s) 26, 39, 47, 57, 62, 151, 192, 193, 231
Sse9I AATT 3 cut(s) 56, 110, 236
SsiI CCGC 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 179
TaiI ACGT 1 cut(s) 159
TasI AATT 3 cut(s) 56, 110, 236
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 1 cut(s) 127
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 2 cut(s) 157, 175
TseI GCWGC 1 cut(s) 41
Tsp45I GTSAC 2 cut(s) 157, 175
TspDTI ATGAA 1 cut(s) 123
TspRI CASTG 1 cut(s) 166
XapI RAATTY 1 cut(s) 236
ZraI GACGTC 1 cut(s) 157
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.