pycom15g29880

FabA-like domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Reverse (-)
26991371 .. 26991756
386 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 279 bp
ATGTCAGCAGGTATCTCAAGCTCCCTCTTTTCTCTCGCTCTTGCTCAGTCACTCACCCAACCCAGAAACCTAAGAATCCTTCACTCTCCCACCTCTCTTTCTCTTCCAATTTCTCCTTCTCTTTGTCTCAAATGCAATCGCCACCCCAATTTCTTCGCATGTTGTTCTCTAAATGTACAAGGCAGCGCTGCCCAAGTCACACCCATTGAAAAGCAATACCCAGCATTTCCTACGGTAATGGATATTAATCAGATACGTGAAATCTTGCCCCACAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

93

Amino Acids

10.08

Weight (kDa)

9.25

Isoelectric Point (pI)

64.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 177
AfeI AGCGCT 1 cut(s) 187
AgsI TTSAA 1 cut(s) 209
AjuI GAANNNNNNNTTGG 2 cut(s) 100, 132
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 131
Aor51HI AGCGCT 1 cut(s) 187
ApeKI GCWGC 2 cut(s) 183, 188
AseI ATTAAT 1 cut(s) 246
AspLEI GCGC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 46
BbvI GCAGC 2 cut(s) 175, 195
BcoDI GTCTC 1 cut(s) 131
BfoI RGCGCY 1 cut(s) 189
BisI GCNGC 2 cut(s) 184, 189
BlsI GCNGC 2 cut(s) 185, 190
BsaAI YACGTR 1 cut(s) 257
BsaBI GATNNNNATC 1 cut(s) 246
Bse8I GATNNNNATC 1 cut(s) 246
BseJI GATNNNNATC 1 cut(s) 246
BseMII CTCAG 1 cut(s) 59
BseXI GCAGC 2 cut(s) 175, 195
BseYI CCCAGC 1 cut(s) 220
BsmAI GTCTC 1 cut(s) 131
Bsp1407I TGTACA 1 cut(s) 175
BspCNI CTCAG 1 cut(s) 58
BsrGI TGTACA 1 cut(s) 175
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 1 cut(s) 108
BstAUI TGTACA 1 cut(s) 175
BstBAI YACGTR 1 cut(s) 257
BstDEI CTNAG 2 cut(s) 45, 71
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 1 cut(s) 188
BstMAI GTCTC 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 162
BstV1I GCAGC 2 cut(s) 175, 195
CfoI GCGC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 176
CviAII CATG 1 cut(s) 159
CviJI RGCY 1 cut(s) 21
CviKI_1 RGCY 1 cut(s) 21
CviQI GTAC 1 cut(s) 176
DdeI CTNAG 2 cut(s) 45, 71
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco47III AGCGCT 1 cut(s) 187
FaeI CATG 1 cut(s) 162
FaiI YATR 1 cut(s) 160
FatI CATG 1 cut(s) 158
Fnu4HI GCNGC 2 cut(s) 184, 189
Fsp4HI GCNGC 2 cut(s) 184, 189
GlaI GCGC 1 cut(s) 187
GluI GCNGC 2 cut(s) 184, 189
GsaI CCCAGC 1 cut(s) 224
HaeII RGCGCY 1 cut(s) 189
HhaI GCGC 1 cut(s) 188
Hin1II CATG 1 cut(s) 162
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HinfI GANTC 1 cut(s) 75
HphI GGTGA 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 252
HpyAV CCTTC 2 cut(s) 89, 126
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 1 cut(s) 135
HpyF3I CTNAG 2 cut(s) 45, 71
HpySE526I ACGT 1 cut(s) 256
Hsp92II CATG 1 cut(s) 162
HspAI GCGC 1 cut(s) 186
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 3 cut(s) 76, 234, 259
Lsp1109I GCAGC 2 cut(s) 175, 195
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 2 cut(s) 48, 196
MboII GAAGA 2 cut(s) 95, 145
MluCI AATT 2 cut(s) 108, 148
MnlI CCTC 2 cut(s) 35, 103
MseI TTAA 1 cut(s) 246
NlaIII CATG 1 cut(s) 162
NmuCI GTSAC 2 cut(s) 48, 196
NspI RCATGY 1 cut(s) 162
PfeI GAWTC 1 cut(s) 75
PkrI GCNGC 2 cut(s) 185, 190
Ppu21I YACGTR 1 cut(s) 257
PshBI ATTAAT 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 220
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 2 cut(s) 184, 189
SetI ASST 6 cut(s) 13, 23, 72, 95, 259, 278
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 2 cut(s) 108, 148
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 1 cut(s) 259
TasI AATT 2 cut(s) 108, 148
TatI WGTACW 1 cut(s) 175
TfiI GAWTC 1 cut(s) 75
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TseFI GTSAC 2 cut(s) 48, 196
TseI GCWGC 2 cut(s) 183, 188
Tsp45I GTSAC 2 cut(s) 48, 196
VspI ATTAAT 1 cut(s) 246
XceI RCATGY 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.