pycom15g30320

Carbamoyl-phosphate synthase small

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
27698725 .. 27699171
447 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 339 bp
ATGCAAGCCCCTTATGAATGGGTTGATAAAACAAATTCAGAGTGGGAATTTAACTACAAAGGAAGAGATGGAGAGGCTTTTCATGTAATGCATATGATTTTGGAATCAAACATAACATACTTAGGCGCTTGGCTTCCCACGGCTGTAAAATTACTGTTGTGCCATCAACATACTCTGCATCAGAGACCCTTACGAGGAAACCAGATGGGGTTATTTTTAGCAATGGCCCTGGAGACCCATCTGCAGTTCCTTATGCTGTTGAAACAGTCAAGGAGATACTTGGAAAGGTTCCTGTTTTTGGAATTTGCATGGGTCATCAATTGCTTGGCCAGGCATTAG

Protein Analysis

113

Amino Acids

13.41

Weight (kDa)

7.89

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 327
AcsI RAATTY 3 cut(s) 34, 47, 302
AfiI CCNNNNNNNGG 2 cut(s) 194, 298
AgsI TTSAA 1 cut(s) 262
AjnI CCWGG 2 cut(s) 228, 329
Alw26I GTCTC 2 cut(s) 178, 227
AoxI GGCC 2 cut(s) 225, 327
ApoI RAATTY 3 cut(s) 34, 47, 302
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 226
BalI TGGCCA 1 cut(s) 329
BccI CCATC 4 cut(s) 62, 171, 199, 246
BceAI ACGGC 1 cut(s) 156
BciT130I CCWGG 2 cut(s) 230, 331
BcoDI GTCTC 2 cut(s) 178, 227
BfmI CTRYAG 1 cut(s) 242
BfoI RGCGCY 1 cut(s) 129
Bme1390I CCNGG 2 cut(s) 230, 331
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 1 cut(s) 290
BmrFI CCNGG 2 cut(s) 230, 331
BmsI GCATC 1 cut(s) 187
BpmI CTGGAG 1 cut(s) 251
BsaI GGTCTC 2 cut(s) 178, 227
BsaJI CCNNGG 2 cut(s) 138, 228
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 298
Bse3DI GCAATG 1 cut(s) 228
BseBI CCWGG 2 cut(s) 230, 331
BseDI CCNNGG 2 cut(s) 138, 228
BseLI CCNNNNNNNGG 2 cut(s) 194, 298
BseMI GCAATG 1 cut(s) 228
BshFI GGCC 2 cut(s) 227, 329
BslI CCNNNNNNNGG 2 cut(s) 194, 298
BsmAI GTCTC 2 cut(s) 178, 227
BsnI GGCC 2 cut(s) 227, 329
Bso31I GGTCTC 2 cut(s) 178, 227
BspANI GGCC 2 cut(s) 227, 329
BspLI GGNNCC 1 cut(s) 290
BspMAI CTGCAG 1 cut(s) 246
BspTNI GGTCTC 2 cut(s) 178, 227
BsrDI GCAATG 1 cut(s) 228
BssECI CCNNGG 2 cut(s) 138, 228
Bst2UI CCWGG 2 cut(s) 230, 331
Bst4CI ACNGT 2 cut(s) 156, 267
Bst6I CTCTTC 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 121
BstDSI CCRYGG 1 cut(s) 138
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstMAI GTCTC 2 cut(s) 178, 227
BstNI CCWGG 2 cut(s) 230, 331
BstSCI CCNGG 2 cut(s) 228, 329
BstSFI CTRYAG 1 cut(s) 242
BsuRI GGCC 2 cut(s) 227, 329
BtgI CCRYGG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 226
CviAII CATG 2 cut(s) 83, 309
CviJI RGCY 6 cut(s) 8, 77, 133, 143, 227, 329
CviKI_1 RGCY 6 cut(s) 8, 77, 133, 143, 227, 329
DdeI CTNAG 1 cut(s) 121
EaeI YGGCCR 1 cut(s) 327
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
Eco31I GGTCTC 2 cut(s) 178, 227
EcoRII CCWGG 2 cut(s) 228, 329
EcoT22I ATGCAT 1 cut(s) 93
FaeI CATG 2 cut(s) 86, 312
FaiI YATR 9 cut(s) 15, 84, 93, 95, 113, 118, 171, 254, 310
FatI CATG 2 cut(s) 82, 308
FauNDI CATATG 1 cut(s) 93
GlaI GCGC 1 cut(s) 127
GsuI CTGGAG 1 cut(s) 251
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 2 cut(s) 227, 329
HhaI GCGC 1 cut(s) 128
Hin1II CATG 2 cut(s) 86, 312
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HinfI GANTC 1 cut(s) 104
Hpy188I TCNGA 2 cut(s) 40, 183
HpyCH4III ACNGT 2 cut(s) 156, 267
HpyCH4V TGCA 5 cut(s) 4, 91, 178, 244, 308
HpyF3I CTNAG 1 cut(s) 121
Hsp92II CATG 2 cut(s) 86, 312
HspAI GCGC 1 cut(s) 126
LpnPI CCDG 5 cut(s) 215, 215, 242, 305, 316
LweI GCATC 1 cut(s) 187
MboII GAAGA 1 cut(s) 75
MfeI CAATTG 1 cut(s) 319
MlsI TGGCCA 1 cut(s) 329
MluCI AATT 5 cut(s) 34, 47, 149, 302, 319
MluNI TGGCCA 1 cut(s) 329
MnlI CCTC 2 cut(s) 67, 188
Mox20I TGGCCA 1 cut(s) 329
Mph1103I ATGCAT 1 cut(s) 93
MscI TGGCCA 1 cut(s) 329
MseI TTAA 1 cut(s) 51
Msp20I TGGCCA 1 cut(s) 329
MspR9I CCNGG 2 cut(s) 230, 331
MunI CAATTG 1 cut(s) 319
MvaI CCWGG 2 cut(s) 230, 331
NdeI CATATG 1 cut(s) 93
NlaIII CATG 2 cut(s) 86, 312
NlaIV GGNNCC 1 cut(s) 290
NsiI ATGCAT 1 cut(s) 93
PfeI GAWTC 1 cut(s) 104
Psp6I CCWGG 2 cut(s) 228, 329
PspGI CCWGG 2 cut(s) 228, 329
PspN4I GGNNCC 1 cut(s) 290
PspPI GGNCC 1 cut(s) 226
PstI CTGCAG 1 cut(s) 246
SaqAI TTAA 1 cut(s) 51
Sau96I GGNCC 1 cut(s) 226
ScrFI CCNGG 2 cut(s) 230, 331
SetI ASST 1 cut(s) 290
SfaNI GCATC 1 cut(s) 187
SfcI CTRYAG 1 cut(s) 242
Sse9I AATT 5 cut(s) 34, 47, 149, 302, 319
StyD4I CCNGG 2 cut(s) 228, 329
TaaI ACNGT 2 cut(s) 156, 267
TasI AATT 5 cut(s) 34, 47, 149, 302, 319
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TspDTI ATGAA 2 cut(s) 30, 71
XapI RAATTY 3 cut(s) 34, 47, 302
Zsp2I ATGCAT 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.