Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

29262419 .. 29263145

Gene Structure 727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCTTAATTTCTCAGCCGTGTTACGGAAAGAGAACCGCAAGCAGTCGTCGAGGCTTCCGTCGATGCAGGAGATGACTCCGCCGGCAAAGAGTTGGGCGAAAGCTAGGGGAATGACAGTTTTCCACACAACACATATAACAGAGAGAATTCGCCGCCGACGATTTCATTACGTTGCTCGCTGCCATTTGGCCGGAATCATGACCACACTTGTCACCTACGGCGTTCTCCAGGAGAAGATCATTAGAGTGCCGTACGGCAACGACAAGGCATTTTTCAAGTACTCGTTTTTCCTTGTCTTCTGCAACCGCATCACGACGTCGGCAGTATCAGTCGGAGTTTTTACGGCCTCGTATCGATTTCAAACATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

124

Amino Acids

14.37

Weight (kDa)

10.81

Isoelectric Point (pI)

45.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	320
AciI	CCGC	4 cut(s)	37, 80, 154, 307
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	1 cut(s)	147
AcyI	GRCGYC	1 cut(s)	317
AfaI	GTAC	2 cut(s)	254, 281
AfiI	CCNNNNNNNGG	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	277, 362
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
AoxI	GGCC	2 cut(s)	189, 345
ApeKI	GCWGC	1 cut(s)	180
ApoI	RAATTY	1 cut(s)	147
AsuHPI	GGTGA	1 cut(s)	205
BbsI	GAAGAC	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	167
BceAI	ACGGC	5 cut(s)	2, 235, 235, 271, 360
BciT130I	CCWGG	1 cut(s)	230
BfaI	CTAG	1 cut(s)	105
BisI	GCNGC	2 cut(s)	154, 181
BlsI	GCNGC	2 cut(s)	155, 182
BmcAI	AGTACT	1 cut(s)	281
Bme1390I	CCNGG	1 cut(s)	230
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	2 cut(s)	54, 318
BpiI	GAAGAC	1 cut(s)	289
BpmI	CTGGAG	1 cut(s)	212
Bsa29I	ATCGAT	1 cut(s)	355
BsaHI	GRCGYC	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse118I	RCCGGY	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	230
BseCI	ATCGAT	1 cut(s)	355
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	167
BshFI	GGCC	2 cut(s)	191, 347
BshVI	ATCGAT	1 cut(s)	355
BsiSI	CCGG	2 cut(s)	83, 192
BsiWI	CGTACG	1 cut(s)	252
BslI	CCNNNNNNNGG	1 cut(s)	24
BsnI	GGCC	2 cut(s)	191, 347
Bsp143I	GATC	1 cut(s)	237
BspACI	CCGC	4 cut(s)	37, 80, 154, 307
BspANI	GGCC	2 cut(s)	191, 347
BspCNI	CTCAG	1 cut(s)	26
BspDI	ATCGAT	1 cut(s)	355
BspHI	TCATGA	1 cut(s)	198
BsrFI	RCCGGY	1 cut(s)	82
BssAI	RCCGGY	1 cut(s)	82
BssMI	GATC	1 cut(s)	237
BssNI	GRCGYC	1 cut(s)	317
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	118
BstACI	GRCGYC	1 cut(s)	317
BstC8I	GCNNGC	3 cut(s)	41, 84, 178
BstDEI	CTNAG	1 cut(s)	13
BstKTI	GATC	1 cut(s)	240
BstMBI	GATC	1 cut(s)	237
BstNI	CCWGG	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	167
BstV2I	GAAGAC	1 cut(s)	289
Bsu15I	ATCGAT	1 cut(s)	355
BsuRI	GGCC	2 cut(s)	191, 347
BsuTUI	ATCGAT	1 cut(s)	355
Cac8I	GCNNGC	3 cut(s)	41, 84, 178
CciI	TCATGA	1 cut(s)	198
Cfr10I	RCCGGY	1 cut(s)	82
ClaI	ATCGAT	1 cut(s)	355
Csp6I	GTAC	2 cut(s)	253, 280
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	5 cut(s)	17, 55, 104, 191, 347
CviKI_1	RGCY	5 cut(s)	17, 55, 104, 191, 347
CviQI	GTAC	2 cut(s)	253, 280
DdeI	CTNAG	1 cut(s)	13
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
EaeI	YGGCCR	1 cut(s)	189
EciI	GGCGGA	1 cut(s)	69
EcoRI	GAATTC	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	228
FaeI	CATG	1 cut(s)	202
FaiI	YATR	4 cut(s)	135, 137, 200, 367
FatI	CATG	1 cut(s)	198
Fnu4HI	GCNGC	2 cut(s)	154, 181
Fsp4HI	GCNGC	2 cut(s)	154, 181
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	2 cut(s)	154, 181
GsuI	CTGGAG	1 cut(s)	212
HaeIII	GGCC	2 cut(s)	191, 347
HapII	CCGG	2 cut(s)	83, 192
Hin1I	GRCGYC	1 cut(s)	317
Hin1II	CATG	1 cut(s)	202
HinfI	GANTC	2 cut(s)	76, 195
HpaII	CCGG	2 cut(s)	83, 192
HphI	GGTGA	1 cut(s)	205
Hpy188I	TCNGA	1 cut(s)	335
Hpy188III	TCNNGA	2 cut(s)	199, 313
Hpy99I	CGWCG	5 cut(s)	52, 64, 162, 319, 322
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4IV	ACGT	2 cut(s)	171, 317
HpyCH4V	TGCA	2 cut(s)	67, 303
HpyF3I	CTNAG	1 cut(s)	13
HpySE526I	ACGT	2 cut(s)	171, 317
Hsp92I	GRCGYC	1 cut(s)	317
Hsp92II	CATG	1 cut(s)	202
KroI	GCCGGC	1 cut(s)	82
KroNI	GCCGGC	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	237
LpnPI	CCDG	5 cut(s)	53, 96, 205, 215, 242
Lsp1109I	GCAGC	1 cut(s)	167
LweI	GCATC	2 cut(s)	54, 318
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	2 cut(s)	171, 317
MaeIII	GTNAC	2 cut(s)	21, 211
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	2 cut(s)	247, 289
MluCI	AATT	2 cut(s)	7, 147
MlyI	GAGTC	1 cut(s)	70
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	2 cut(s)	45, 358
MroNI	GCCGGC	1 cut(s)	82
MseI	TTAA	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	245
MspI	CCGG	2 cut(s)	83, 192
MspR9I	CCNGG	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	230
NaeI	GCCGGC	1 cut(s)	84
NdeII	GATC	1 cut(s)	237
NgoMIV	GCCGGC	1 cut(s)	82
NlaIII	CATG	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	211
PagI	TCATGA	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	2 cut(s)	56, 157
PdiI	GCCGGC	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	195
Pfl23II	CGTACG	1 cut(s)	252
PfoI	TCCNGGA	1 cut(s)	228
PkrI	GCNGC	2 cut(s)	155, 182
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
PspLI	CGTACG	1 cut(s)	252
RsaI	GTAC	2 cut(s)	254, 281
RsaNI	GTAC	2 cut(s)	253, 280
RseI	CAYNNNNRTG	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	2 cut(s)	154, 181
Sau3AI	GATC	1 cut(s)	237
ScaI	AGTACT	1 cut(s)	281
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	230
SetI	ASST	4 cut(s)	106, 174, 218, 320
SfaNI	GCATC	2 cut(s)	54, 318
SmiMI	CAYNNNNRTG	1 cut(s)	245
Sse9I	AATT	2 cut(s)	7, 147
SsiI	CCGC	4 cut(s)	37, 80, 154, 307
SspMI	CTAG	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	118
TaiI	ACGT	2 cut(s)	174, 320
TaqI	TCGA	3 cut(s)	50, 62, 355
TasI	AATT	2 cut(s)	7, 147
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	195
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	180
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	155
TspGWI	ACGGA	2 cut(s)	40, 48
XapI	RAATTY	1 cut(s)	147
XspI	CTAG	1 cut(s)	105
ZraI	GACGTC	1 cut(s)	318
ZrmI	AGTACT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.