pycom15g31420

Histone chaperone domain CHZ

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
29876593 .. 29877193
601 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 438 bp
ATGGGCATAAGAAACGGAAAAGAATGGCTAAGGAGACTAACGTCTCTGGAAAGAAGAGGATCGATCCTCCTCAAAAACAACCAGAGGACAAAAGTGACACAGAAGACACTGGAAATGTCTCTGAAGATCGATCGTTCTCAGTCATCTGCTGAAAAACCTATAAAGAAGAAAGAAGTTTCAACAACACCTGCATATGGGAAACGTGTGGAGCATCTACGATCAGTTATCAAAGCATGTGGAATGAGCGTGGCCCCCTCAGTTTACAAGAAAGTCAAGCAGGTGCCTGAGAACAAACGTGAAGCTCACTTGATAAAAGAGTTAGAGGAGATACTCTCTAGAGAAGGATTATCTGCACATCCCTCTGAGAAGGGTGAGTTTTTAAATGTAGCCTTTGATAGCGATACTTGGACTATCAACTGTGGATATGATTGGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CHZ

Protein Analysis

146

Amino Acids

16.58

Weight (kDa)

9.75

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 196, 268
Acc36I ACCTGC 2 cut(s) 196, 268
AccB1I GGYRCC 1 cut(s) 280
AclWI GGATC 2 cut(s) 58, 67
AcuI CTGAAG 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 194
AflIII ACRYGT 1 cut(s) 202
AgsI TTSAA 1 cut(s) 180
AluBI AGCT 1 cut(s) 302
AluI AGCT 1 cut(s) 302
Alw26I GTCTC 3 cut(s) 28, 48, 123
AlwI GGATC 2 cut(s) 58, 67
AoxI GGCC 1 cut(s) 249
AspS9I GGNCC 1 cut(s) 250
AsuHPI GGTGA 1 cut(s) 383
BanI GGYRCC 1 cut(s) 280
BbsI GAAGAC 1 cut(s) 110
BcoDI GTCTC 3 cut(s) 28, 48, 123
BfaI CTAG 1 cut(s) 336
BfuAI ACCTGC 2 cut(s) 196, 268
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 2 cut(s) 252, 282
BmsI GCATC 1 cut(s) 220
BoxI GACNNNNGTC 1 cut(s) 40
BpiI GAAGAC 1 cut(s) 110
BplI GAGNNNNNCTC 2 cut(s) 317, 349
Bpu10I CCTNAGC 1 cut(s) 29
Bsa29I ATCGAT 2 cut(s) 62, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse1I ACTGG 1 cut(s) 114
BseCI ATCGAT 2 cut(s) 62, 129
BseGI GGATG 1 cut(s) 355
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMII CTCAG 4 cut(s) 152, 270, 276, 354
BseNI ACTGG 1 cut(s) 114
BseRI GAGGAG 2 cut(s) 59, 338
BsgI GTGCAG 1 cut(s) 336
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 1 cut(s) 251
BshNI GGYRCC 1 cut(s) 280
BshVI ATCGAT 2 cut(s) 62, 129
BsiEI CGRYCG 1 cut(s) 133
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 3 cut(s) 28, 48, 123
BsmBI CGTCTC 1 cut(s) 48
BsnI GGCC 1 cut(s) 251
Bsp143I GATC 5 cut(s) 59, 63, 126, 130, 218
BspANI GGCC 1 cut(s) 251
BspCNI CTCAG 4 cut(s) 151, 269, 277, 355
BspDI ATCGAT 2 cut(s) 62, 129
BspLI GGNNCC 2 cut(s) 252, 282
BspMI ACCTGC 2 cut(s) 196, 268
BspPI GGATC 2 cut(s) 58, 67
BspT107I GGYRCC 1 cut(s) 280
BsrI ACTGG 1 cut(s) 114
BssMI GATC 5 cut(s) 59, 63, 126, 130, 218
Bst4CI ACNGT 1 cut(s) 419
Bst6I CTCTTC 1 cut(s) 49
BstDEI CTNAG 5 cut(s) 29, 138, 256, 285, 363
BstF5I GGATG 1 cut(s) 355
BstKTI GATC 5 cut(s) 62, 66, 129, 133, 221
BstMAI GTCTC 3 cut(s) 28, 48, 123
BstMBI GATC 5 cut(s) 59, 63, 126, 130, 218
BstMCI CGRYCG 1 cut(s) 133
BstNSI RCATGY 1 cut(s) 237
BstPAI GACNNNNGTC 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 110
Bsu15I ATCGAT 2 cut(s) 62, 129
BsuRI GGCC 1 cut(s) 251
BsuTUI ATCGAT 2 cut(s) 62, 129
BtsCI GGATG 1 cut(s) 355
BtsIMutI CAGTG 1 cut(s) 107
BveI ACCTGC 2 cut(s) 196, 268
Cfr13I GGNCC 1 cut(s) 250
ClaI ATCGAT 2 cut(s) 62, 129
CspCI CAANNNNNGTGG 2 cut(s) 217, 252
CviAII CATG 1 cut(s) 234
CviJI RGCY 4 cut(s) 28, 251, 302, 389
CviKI_1 RGCY 4 cut(s) 28, 251, 302, 389
DdeI CTNAG 5 cut(s) 29, 138, 256, 285, 363
DpnI GATC 5 cut(s) 61, 65, 128, 132, 220
DpnII GATC 5 cut(s) 59, 63, 126, 130, 218
DraI TTTAAA 1 cut(s) 381
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 143
Esp3I CGTCTC 1 cut(s) 48
FaeI CATG 1 cut(s) 237
FaiI YATR 7 cut(s) 8, 161, 193, 195, 235, 426, 436
FatI CATG 1 cut(s) 233
FauNDI CATATG 1 cut(s) 193
FokI GGATG 1 cut(s) 342
FspBI CTAG 1 cut(s) 336
HaeIII GGCC 1 cut(s) 251
Hin1II CATG 1 cut(s) 237
HphI GGTGA 1 cut(s) 383
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 2 cut(s) 123, 364
Hpy188III TCNNGA 2 cut(s) 47, 336
Hpy8I GTNNAC 1 cut(s) 262
HpyAV CCTTC 2 cut(s) 335, 361
HpyCH4III ACNGT 1 cut(s) 419
HpyCH4IV ACGT 3 cut(s) 41, 202, 295
HpyCH4V TGCA 2 cut(s) 191, 353
HpyF3I CTNAG 5 cut(s) 29, 138, 256, 285, 363
HpySE526I ACGT 3 cut(s) 41, 202, 295
Hsp92II CATG 1 cut(s) 237
Kzo9I GATC 5 cut(s) 59, 63, 126, 130, 218
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 6 cut(s) 32, 95, 95, 201, 263, 297
LweI GCATC 1 cut(s) 220
MaeI CTAG 1 cut(s) 336
MaeII ACGT 3 cut(s) 41, 202, 295
MaeIII GTNAC 1 cut(s) 94
MalI GATC 5 cut(s) 61, 65, 128, 132, 220
MboI GATC 5 cut(s) 59, 63, 126, 130, 218
MboII GAAGA 4 cut(s) 66, 115, 136, 178
MnlI CCTC 7 cut(s) 50, 77, 78, 80, 265, 316, 370
MseI TTAA 1 cut(s) 380
NdeI CATATG 1 cut(s) 193
NdeII GATC 5 cut(s) 59, 63, 126, 130, 218
NlaIII CATG 1 cut(s) 237
NlaIV GGNNCC 2 cut(s) 252, 282
NmuCI GTSAC 1 cut(s) 94
NspI RCATGY 1 cut(s) 237
PaqCI CACCTGC 2 cut(s) 196, 268
Ple19I CGATCG 1 cut(s) 133
PshAI GACNNNNGTC 1 cut(s) 40
PspN4I GGNNCC 2 cut(s) 252, 282
PspPI GGNCC 1 cut(s) 250
PvuI CGATCG 1 cut(s) 133
SaqAI TTAA 1 cut(s) 380
Sau3AI GATC 5 cut(s) 59, 63, 126, 130, 218
Sau96I GGNCC 1 cut(s) 250
SetI ASST 7 cut(s) 44, 160, 190, 205, 282, 298, 304
SfaNI GCATC 1 cut(s) 220
SspMI CTAG 1 cut(s) 336
TaaI ACNGT 1 cut(s) 419
TaiI ACGT 3 cut(s) 44, 205, 298
TaqI TCGA 2 cut(s) 62, 129
Tru1I TTAA 1 cut(s) 380
Tru9I TTAA 1 cut(s) 380
TscAI CASTG 1 cut(s) 114
TseFI GTSAC 1 cut(s) 94
Tsp45I GTSAC 1 cut(s) 94
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 1 cut(s) 114
XbaI TCTAGA 1 cut(s) 335
XceI RCATGY 1 cut(s) 237
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.