pycom15g31560

PCI domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
30015661 .. 30017609
1949 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1140 bp
ATGTGGGAGGAAACTGAAAAAGAATACAGTTGCCAGTTCAGTTATCAGTTCTACTTCAACTTCCCACGATCAAAACCAGAGAATTTGACGATTCCCACGATCGAAACTATAGAGCGGTTTAATGATTCCCACGATCTGAGTTCAGTTGAAGACTCCGGGACGTGTCTTGGAACCCATCCTTCTTCACACATTCAATCCTGGACGCCCACTTTCAGGAGCCAAATCTCCTGGCCATGTTCCTCCACCTATGCCGCCGCTGCCTTCGTTGCCATCTTCTCCAGGTACCCAACTTCCCAATTTAAAAAACTAGAAAGAAAGACAATTCAAGAAAAACAAGAACAATGGTGGAGCAAAACGACGTCATTAAACCCTTCAGAAAACAAAGTAAGGTGTGTCCTTGCAGATACTGAGAGTGTTAGATCGAGCAGACAGAGAGATGGCATACTTGAGCATGGGAGAAGCTCACAGAAGAATTACCGACTACCTCAACCGCTTTCCGATGCCGACGCCCTCAACGTCTTCCAGGACTTCAATAGATTGATCAAACAGTCCGATAACGACTCGCAGTTTGGCGAAATTCTGGTGCATCTCTTCCGGGCTTTTCAGAGCTACCGAATTGGGAATTTCATTGATTCCTATCAGACATATGAAAAACCTGCAAATGCTTTTATTCAGGAGTTTCGGAATTGGGATACGGCATGGGCTTTGCCAGTATTGTATGTCATTGCTTATGAGATTAGGGTTCTAGCTGAGAGGGCTGATAAGGAATTGTTTTTGAATGGAAAGTCTCCAGAGAAGTTGAAGGGAGCTGGCTCTTTCCTTATGAAAGTCTTTGGCGTTCTTGCTGGAAAAGGCCCGAAACGTGTTGGAGCATTATACGTCACTTGCCAGTTGTTTAAAGTTTACTTTTTAAGCTTGGTACAGTTCACCTTTGCCGCAGCGAATTCCCTAAGAGAGATAAGGTCAGAATTGCCTTTGGTAGAGCAAATGCAATTTCTTTTCTTTCCTTTTCTGCTCCCTCTCCTTTTGAATTTGTTCTCTATCGCAACTAGACAAAGTAGCTTCAACCACGGACCCAATCATGAATCCCTAAATATCGTTGTGTACAAAGATATTTTGCTTCCCTCGAATTCAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0000956 GO:0000972 GO:0000973 GO:0002376 GO:0002520 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006354 GO:0006355 GO:0006366 GO:0006368 GO:0006401 GO:0006402 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007088 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0008298 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010466 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010941 GO:0010951 GO:0010965 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016071 GO:0016973 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0022622 GO:0023052 GO:0030071 GO:0030162 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031503 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0035556 GO:0042221 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0045787 GO:0045861 GO:0045893 GO:0045931 GO:0045935 GO:0046483 GO:0046700 GO:0046907 GO:0048364 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048534 GO:0048536 GO:0048731 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051028 GO:0051128 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051276 GO:0051336 GO:0051346 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051783 GO:0051983 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0060968 GO:0061013 GO:0065007 GO:0065008 GO:0065009 GO:0070390 GO:0070727 GO:0070887 GO:0071025 GO:0071027 GO:0071028 GO:0071033 GO:0071166 GO:0071310 GO:0071369 GO:0071426 GO:0071427 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0080090 GO:0090068 GO:0090231 GO:0090232 GO:0090266 GO:0090267 GO:0090304 GO:0097159 GO:0097659 GO:0099402 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1901976 GO:1901978 GO:1901987 GO:1901990 GO:1902099 GO:1902680 GO:1903311 GO:1903504 GO:1903506 GO:1903508 GO:1905818 GO:2000112 GO:2000116 GO:2000117 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PCI

Protein Analysis

380

Amino Acids

43.68

Weight (kDa)

8.16

Isoelectric Point (pI)

46.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 362
Acc36I ACCTGC 1 cut(s) 664
Acc65I GGTACC 1 cut(s) 282
AccB1I GGYRCC 1 cut(s) 282
AccBSI CCGCTC 1 cut(s) 115
AciI CCGC 5 cut(s) 115, 252, 255, 491, 936
AcoI YGGCCR 1 cut(s) 230
AcsI RAATTY 6 cut(s) 82, 576, 622, 943, 1030, 1129
AcuI CTGAAG 1 cut(s) 357
AcyI GRCGYC 3 cut(s) 203, 359, 507
AfaI GTAC 3 cut(s) 284, 921, 1106
AfiI CCNNNNNNNGG 1 cut(s) 213
AflIII ACRYGT 2 cut(s) 161, 862
AjiI CACGTC 1 cut(s) 162
AjnI CCWGG 4 cut(s) 197, 227, 278, 522
AluBI AGCT 6 cut(s) 462, 609, 749, 809, 915, 1062
AluI AGCT 6 cut(s) 462, 609, 749, 809, 915, 1062
Alw26I GTCTC 1 cut(s) 792
AlwNI CAGNNNCTG 1 cut(s) 407
AoxI GGCC 2 cut(s) 230, 853
ApeKI GCWGC 2 cut(s) 257, 938
ApoI RAATTY 6 cut(s) 82, 576, 622, 943, 1030, 1129
ArsI GACNNNNNNTTYG 2 cut(s) 551, 583
Asp700I GAANNNNTTC 1 cut(s) 1034
Asp718I GGTACC 1 cut(s) 282
AspS9I GGNCC 2 cut(s) 854, 1073
AsuC2I CCSGG 2 cut(s) 157, 596
AsuHPI GGTGA 1 cut(s) 919
AvaII GGWCC 1 cut(s) 1073
BalI TGGCCA 1 cut(s) 232
BanI GGYRCC 1 cut(s) 282
BbsI GAAGAC 2 cut(s) 156, 511
BbvI GCAGC 2 cut(s) 244, 950
BccI CCATC 3 cut(s) 183, 278, 431
BceAI ACGGC 1 cut(s) 711
BciT130I CCWGG 4 cut(s) 199, 229, 280, 524
BciVI GTATCC 1 cut(s) 685
BclI TGATCA 1 cut(s) 540
BcnI CCSGG 2 cut(s) 157, 596
BcoDI GTCTC 1 cut(s) 792
BfaI CTAG 3 cut(s) 308, 746, 1050
BfmI CTRYAG 1 cut(s) 108
BfuAI ACCTGC 1 cut(s) 664
BfuI GTATCC 1 cut(s) 685
BisI GCNGC 5 cut(s) 252, 255, 258, 936, 939
BlsI GCNGC 5 cut(s) 253, 256, 259, 937, 940
Bme1390I CCNGG 6 cut(s) 157, 199, 229, 280, 524, 596
Bme18I GGWCC 1 cut(s) 1073
BmgBI CACGTC 1 cut(s) 162
BmgT120I GGNCC 2 cut(s) 854, 1073
BmiI GGNNCC 4 cut(s) 172, 218, 284, 1075
BmrFI CCNGG 6 cut(s) 157, 199, 229, 280, 524, 596
BmsI GCATC 2 cut(s) 490, 595
BpiI GAAGAC 2 cut(s) 156, 511
BpmI CTGGAG 2 cut(s) 262, 774
BpuEI CTTGAG 1 cut(s) 467
BpuMI CCSGG 2 cut(s) 157, 596
BsaBI GATNNNNATC 1 cut(s) 636
BsaHI GRCGYC 3 cut(s) 203, 359, 507
BsaJI CCNNGG 1 cut(s) 1069
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse1I ACTGG 3 cut(s) 34, 710, 889
Bse3DI GCAATG 1 cut(s) 723
Bse8I GATNNNNATC 1 cut(s) 636
BseBI CCWGG 4 cut(s) 199, 229, 280, 524
BseDI CCNNGG 1 cut(s) 1069
BseGI GGATG 1 cut(s) 175
BseJI GATNNNNATC 1 cut(s) 636
BseLI CCNNNNNNNGG 1 cut(s) 213
BseMI GCAATG 1 cut(s) 723
BseMII CTCAG 3 cut(s) 128, 399, 741
BseNI ACTGG 3 cut(s) 34, 710, 889
BseXI GCAGC 2 cut(s) 244, 950
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 2 cut(s) 232, 855
BshNI GGYRCC 1 cut(s) 282
BsiEI CGRYCG 1 cut(s) 102
BsiSI CCGG 2 cut(s) 156, 595
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 1 cut(s) 213
BsmAI GTCTC 1 cut(s) 792
BsmFI GGGAC 1 cut(s) 172
BsnI GGCC 2 cut(s) 232, 855
Bsp1407I TGTACA 1 cut(s) 1104
Bsp143I GATC 5 cut(s) 68, 99, 133, 419, 540
BspACI CCGC 5 cut(s) 115, 252, 255, 491, 936
BspANI GGCC 2 cut(s) 232, 855
BspCNI CTCAG 3 cut(s) 129, 400, 742
BspHI TCATGA 1 cut(s) 1081
BspLI GGNNCC 4 cut(s) 172, 218, 284, 1075
BspMI ACCTGC 1 cut(s) 664
BspT107I GGYRCC 1 cut(s) 282
BsrBI CCGCTC 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 723
BsrGI TGTACA 1 cut(s) 1104
BsrI ACTGG 3 cut(s) 34, 710, 889
BssECI CCNNGG 1 cut(s) 1069
BssMI GATC 5 cut(s) 68, 99, 133, 419, 540
BssNI GRCGYC 3 cut(s) 203, 359, 507
Bst2UI CCWGG 4 cut(s) 199, 229, 280, 524
Bst4CI ACNGT 3 cut(s) 29, 549, 924
Bst6I CTCTTC 1 cut(s) 596
BstACI GRCGYC 3 cut(s) 203, 359, 507
BstAUI TGTACA 1 cut(s) 1104
BstC8I GCNNGC 1 cut(s) 811
BstDEI CTNAG 4 cut(s) 137, 408, 750, 950
BstDSI CCRYGG 1 cut(s) 1069
BstF5I GGATG 1 cut(s) 175
BstKTI GATC 5 cut(s) 71, 102, 136, 422, 543
BstMAI GTCTC 1 cut(s) 792
BstMBI GATC 5 cut(s) 68, 99, 133, 419, 540
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 3 cut(s) 257, 266, 755
BstNI CCWGG 4 cut(s) 199, 229, 280, 524
BstSCI CCNGG 6 cut(s) 155, 197, 227, 278, 522, 594
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 244, 950
BstV2I GAAGAC 2 cut(s) 156, 511
BsuI GTATCC 1 cut(s) 685
BsuRI GGCC 2 cut(s) 232, 855
BtgI CCRYGG 1 cut(s) 1069
BtrI CACGTC 1 cut(s) 162
BtsCI GGATG 1 cut(s) 175
BveI ACCTGC 1 cut(s) 664
Cac8I GCNNGC 1 cut(s) 811
CaiI CAGNNNCTG 1 cut(s) 407
CciI TCATGA 1 cut(s) 1081
Cfr13I GGNCC 2 cut(s) 854, 1073
CseI GACGC 2 cut(s) 211, 515
Csp6I GTAC 3 cut(s) 283, 920, 1105
CviAII CATG 4 cut(s) 234, 452, 699, 1082
CviQI GTAC 3 cut(s) 283, 920, 1105
DdeI CTNAG 4 cut(s) 137, 408, 750, 950
DpnI GATC 5 cut(s) 70, 101, 135, 421, 542
DpnII GATC 5 cut(s) 68, 99, 133, 419, 540
DraI TTTAAA 2 cut(s) 301, 898
EaeI YGGCCR 1 cut(s) 230
Eam1104I CTCTTC 1 cut(s) 596
EarI CTCTTC 1 cut(s) 596
Eco47I GGWCC 1 cut(s) 1073
Eco57I CTGAAG 1 cut(s) 357
EcoRI GAATTC 2 cut(s) 943, 1129
EcoRII CCWGG 4 cut(s) 197, 227, 278, 522
FaeI CATG 4 cut(s) 237, 455, 702, 1085
FaqI GGGAC 1 cut(s) 172
FatI CATG 4 cut(s) 233, 451, 698, 1081
FauNDI CATATG 1 cut(s) 646
FbaI TGATCA 1 cut(s) 540
Fnu4HI GCNGC 5 cut(s) 252, 255, 258, 936, 939
FokI GGATG 1 cut(s) 162
Fsp4HI GCNGC 5 cut(s) 252, 255, 258, 936, 939
FspBI CTAG 3 cut(s) 308, 746, 1050
GluI GCNGC 5 cut(s) 252, 255, 258, 936, 939
GsuI CTGGAG 2 cut(s) 262, 774
HaeIII GGCC 2 cut(s) 232, 855
HapII CCGG 2 cut(s) 156, 595
HgaI GACGC 2 cut(s) 211, 515
Hin1I GRCGYC 3 cut(s) 203, 359, 507
Hin1II CATG 4 cut(s) 237, 455, 702, 1085
HindIII AAGCTT 1 cut(s) 913
HinfI GANTC 6 cut(s) 91, 125, 152, 560, 632, 1085
HpaII CCGG 2 cut(s) 156, 595
HphI GGTGA 1 cut(s) 919
Hpy166II GTNNAC 3 cut(s) 904, 927, 1105
Hpy188I TCNGA 8 cut(s) 138, 376, 499, 553, 606, 642, 684, 967
Hpy188III TCNNGA 5 cut(s) 214, 326, 674, 791, 1082
Hpy8I GTNNAC 3 cut(s) 904, 927, 1105
Hpy99I CGWCG 2 cut(s) 361, 509
HpyAV CCTTC 4 cut(s) 189, 271, 381, 796
HpyCH4III ACNGT 3 cut(s) 29, 549, 924
HpyCH4IV ACGT 5 cut(s) 161, 359, 516, 862, 879
HpyCH4V TGCA 4 cut(s) 401, 586, 659, 991
HpyF10VI GCNNNNNNNGC 3 cut(s) 257, 266, 755
HpyF3I CTNAG 4 cut(s) 137, 408, 750, 950
HpySE526I ACGT 5 cut(s) 161, 359, 516, 862, 879
Hsp92I GRCGYC 3 cut(s) 203, 359, 507
Hsp92II CATG 4 cut(s) 237, 455, 702, 1085
KpnI GGTACC 1 cut(s) 286
Ksp22I TGATCA 1 cut(s) 540
Kzo9I GATC 5 cut(s) 68, 99, 133, 419, 540
LmnI GCTCC 5 cut(s) 216, 348, 806, 869, 1020
Lsp1109I GCAGC 2 cut(s) 244, 950
LweI GCATC 2 cut(s) 490, 595
MaeI CTAG 3 cut(s) 308, 746, 1050
MaeII ACGT 5 cut(s) 161, 359, 516, 862, 879
MaeIII GTNAC 1 cut(s) 880
MalI GATC 5 cut(s) 70, 101, 135, 421, 542
MbiI CCGCTC 1 cut(s) 115
MboI GATC 5 cut(s) 68, 99, 133, 419, 540
MboII GAAGA 6 cut(s) 161, 174, 265, 481, 511, 583
MlsI TGGCCA 1 cut(s) 232
MluNI TGGCCA 1 cut(s) 232
MlyI GAGTC 2 cut(s) 146, 554
MmeI TCCRAC 1 cut(s) 847
MnlI CCTC 6 cut(s) 250, 495, 521, 747, 1029, 1135
Mox20I TGGCCA 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 1034
MscI TGGCCA 1 cut(s) 232
MseI TTAA 5 cut(s) 120, 300, 365, 897, 911
Msp20I TGGCCA 1 cut(s) 232
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 2 cut(s) 156, 595
MspR9I CCNGG 6 cut(s) 157, 199, 229, 280, 524, 596
MvaI CCWGG 4 cut(s) 199, 229, 280, 524
MwoI GCNNNNNNNGC 3 cut(s) 257, 266, 755
NciI CCSGG 2 cut(s) 157, 596
NdeI CATATG 1 cut(s) 646
NdeII GATC 5 cut(s) 68, 99, 133, 419, 540
NlaIII CATG 4 cut(s) 237, 455, 702, 1085
NlaIV GGNNCC 4 cut(s) 172, 218, 284, 1075
NmuCI GTSAC 1 cut(s) 880
PagI TCATGA 1 cut(s) 1081
PcsI WCGNNNNNNNCGW 2 cut(s) 95, 513
PdmI GAANNNNTTC 1 cut(s) 1034
PfeI GAWTC 4 cut(s) 91, 125, 632, 1085
PfoI TCCNGGA 3 cut(s) 155, 197, 522
PkrI GCNGC 5 cut(s) 253, 256, 259, 937, 940
Ple19I CGATCG 1 cut(s) 102
PleI GAGTC 2 cut(s) 146, 554
PpsI GAGTC 2 cut(s) 146, 554
Psp6I CCWGG 4 cut(s) 197, 227, 278, 522
PspGI CCWGG 4 cut(s) 197, 227, 278, 522
PspN4I GGNNCC 4 cut(s) 172, 218, 284, 1075
PspPI GGNCC 2 cut(s) 854, 1073
PstNI CAGNNNCTG 1 cut(s) 407
PvuI CGATCG 1 cut(s) 102
RsaI GTAC 3 cut(s) 284, 921, 1106
RsaNI GTAC 3 cut(s) 283, 920, 1105
SaqAI TTAA 5 cut(s) 120, 300, 365, 897, 911
SatI GCNGC 5 cut(s) 252, 255, 258, 936, 939
Sau3AI GATC 5 cut(s) 68, 99, 133, 419, 540
Sau96I GGNCC 2 cut(s) 854, 1073
SchI GAGTC 2 cut(s) 146, 554
ScrFI CCNGG 6 cut(s) 157, 199, 229, 280, 524, 596
SfaNI GCATC 2 cut(s) 490, 595
SfcI CTRYAG 1 cut(s) 108
SinI GGWCC 1 cut(s) 1073
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
SsiI CCGC 5 cut(s) 115, 252, 255, 491, 936
SspMI CTAG 3 cut(s) 308, 746, 1050
StyD4I CCNGG 6 cut(s) 155, 197, 227, 278, 522, 594
TaaI ACNGT 3 cut(s) 29, 549, 924
TaiI ACGT 5 cut(s) 164, 362, 519, 865, 882
TaqI TCGA 3 cut(s) 102, 422, 1127
TatI WGTACW 1 cut(s) 1104
TauI GCSGC 3 cut(s) 254, 257, 938
TfiI GAWTC 4 cut(s) 91, 125, 632, 1085
Tru1I TTAA 5 cut(s) 120, 300, 365, 897, 911
Tru9I TTAA 5 cut(s) 120, 300, 365, 897, 911
TseFI GTSAC 1 cut(s) 880
TseI GCWGC 2 cut(s) 257, 938
Tsp45I GTSAC 1 cut(s) 880
TspDTI ATGAA 4 cut(s) 616, 663, 839, 1098
TspGWI ACGGA 1 cut(s) 1086
VpaK11BI GGWCC 1 cut(s) 1073
XapI RAATTY 6 cut(s) 82, 576, 622, 943, 1030, 1129
XmnI GAANNNNTTC 1 cut(s) 1034
XspI CTAG 3 cut(s) 308, 746, 1050
ZraI GACGTC 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.