Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0029385

Physical Location & Seq

Genomic Coordinates Reverse (-)

31587067 .. 31587694

Gene Structure 628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAATTTTTTACAATTTCATCCCTTCCATTACCCCCTCACCCTTTCTTCTCCCTCCCATCTTCCCCAAACCCAGATCCCACCCTCATCCGCGCCTCCCCCTCCTGTCTTCCCCAAAACTAGATCCCACAATACCTTCTCCAACTTCAACCAGTCGTTCGCCTTCGACCCCATCTCAAACCTCTGGTTCCGCCACCCCACCCCCACCTTCCCCTTAGTCCTCGTCCTTCTTCGGCACCGACGGCTTCTTCCTCATCACCACCCCCTTTATCACTTTCTCCCCTATTCTCAAGCGCCACTAGCTCTCCACCTCCCCTCTCCGATGTTCCTGCATCAACCCCCTTGTCGGCGTCGATTTTCCCCCTCCTCCCCATCCCTAGCTTCGTCGTCCTCGGTGGCGTCCGATTCCTGGCTCCTCTGCCCTCCCCTCCCAGCCGATTTCCGCTCCGGAAACTCATCCCAGTCGCTCTCCTCCACCCTATCGAGACCCAAATGTGTTGGCATAGTCGAGCTACGAGTTGGGGGAGGCGATGGTGGGGTTGAATTTGAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

185

Amino Acids

20.47

Weight (kDa)

9.91

Isoelectric Point (pI)

87.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029385)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g20410 pycom15g32520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	234
AccBSI	CCGCTC	1 cut(s)	444
AccII	CGCG	1 cut(s)	92
AccIII	TCCGGA	1 cut(s)	446
AciI	CCGC	3 cut(s)	90, 190, 442
AclWI	GGATC	2 cut(s)	70, 117
AcsI	RAATTY	2 cut(s)	4, 542
AcyI	GRCGYC	2 cut(s)	349, 398
AfiI	CCNNNNNNNGG	2 cut(s)	345, 408
AgsI	TTSAA	3 cut(s)	148, 542, 548
AjnI	CCWGG	1 cut(s)	407
AluBI	AGCT	3 cut(s)	302, 380, 511
AluI	AGCT	3 cut(s)	302, 380, 511
Alw26I	GTCTC	1 cut(s)	478
AlwI	GGATC	2 cut(s)	70, 117
Aor13HI	TCCGGA	1 cut(s)	446
ApoI	RAATTY	2 cut(s)	4, 542
AspLEI	GCGC	2 cut(s)	94, 295
AsuHPI	GGTGA	2 cut(s)	31, 248
BanI	GGYRCC	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	100
BccI	CCATC	4 cut(s)	66, 179, 379, 524
BceAI	ACGGC	1 cut(s)	257
BcgI	CGANNNNNNTGC	2 cut(s)	310, 344
BciT130I	CCWGG	1 cut(s)	409
BcoDI	GTCTC	1 cut(s)	478
BfaI	CTAG	3 cut(s)	120, 299, 377
BfoI	RGCGCY	1 cut(s)	296
Bme1390I	CCNGG	1 cut(s)	409
BmiI	GGNNCC	3 cut(s)	188, 236, 413
BmrFI	CCNGG	1 cut(s)	409
BmrI	ACTGGG	1 cut(s)	454
BmsI	GCATC	1 cut(s)	340
BmuI	ACTGGG	1 cut(s)	454
BpiI	GAAGAC	1 cut(s)	100
BpuEI	CTTGAG	1 cut(s)	273
BsaHI	GRCGYC	2 cut(s)	349, 398
BsaI	GGTCTC	1 cut(s)	478
BsaJI	CCNNGG	1 cut(s)	390
BsaWI	WCCGGW	1 cut(s)	446
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	2 cut(s)	345, 408
Bse1I	ACTGG	2 cut(s)	151, 460
BseAI	TCCGGA	1 cut(s)	446
BseBI	CCWGG	1 cut(s)	409
BseDI	CCNNGG	1 cut(s)	390
BseGI	GGATG	4 cut(s)	19, 86, 371, 455
BseLI	CCNNNNNNNGG	2 cut(s)	345, 408
BseNI	ACTGG	2 cut(s)	151, 460
BseRI	GAGGAG	3 cut(s)	355, 404, 460
BseYI	CCCAGC	1 cut(s)	430
Bsh1236I	CGCG	1 cut(s)	92
BshNI	GGYRCC	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	447
BslI	CCNNNNNNNGG	2 cut(s)	345, 408
BsmAI	GTCTC	1 cut(s)	478
Bso31I	GGTCTC	1 cut(s)	478
Bsp13I	TCCGGA	1 cut(s)	446
Bsp143I	GATC	2 cut(s)	75, 122
BspACI	CCGC	3 cut(s)	90, 190, 442
BspEI	TCCGGA	1 cut(s)	446
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	3 cut(s)	188, 236, 413
BspPI	GGATC	2 cut(s)	70, 117
BspT107I	GGYRCC	1 cut(s)	234
BspTNI	GGTCTC	1 cut(s)	478
BsrBI	CCGCTC	1 cut(s)	444
BsrI	ACTGG	2 cut(s)	151, 460
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	2 cut(s)	75, 122
BssNI	GRCGYC	2 cut(s)	349, 398
Bst2UI	CCWGG	1 cut(s)	409
BstACI	GRCGYC	2 cut(s)	349, 398
BstDEI	CTNAG	1 cut(s)	214
BstF5I	GGATG	4 cut(s)	19, 86, 371, 455
BstFNI	CGCG	1 cut(s)	92
BstH2I	RGCGCY	1 cut(s)	296
BstHHI	GCGC	2 cut(s)	94, 295
BstKTI	GATC	2 cut(s)	78, 125
BstMAI	GTCTC	1 cut(s)	478
BstMBI	GATC	2 cut(s)	75, 122
BstMWI	GCNNNNNNNGC	2 cut(s)	241, 299
BstNI	CCWGG	1 cut(s)	409
BstSCI	CCNGG	1 cut(s)	407
BstUI	CGCG	1 cut(s)	92
BstV2I	GAAGAC	1 cut(s)	100
BstX2I	RGATCY	2 cut(s)	75, 122
BstYI	RGATCY	2 cut(s)	75, 122
BtgZI	GCGATG	1 cut(s)	543
BtsCI	GGATG	4 cut(s)	19, 86, 371, 455
CfoI	GCGC	2 cut(s)	94, 295
CseI	GACGC	2 cut(s)	338, 387
CviJI	RGCY	6 cut(s)	244, 302, 380, 412, 434, 511
CviKI_1	RGCY	6 cut(s)	244, 302, 380, 412, 434, 511
DdeI	CTNAG	1 cut(s)	214
DpnI	GATC	2 cut(s)	77, 124
DpnII	GATC	2 cut(s)	75, 122
EciI	GGCGGA	1 cut(s)	179
Eco31I	GGTCTC	1 cut(s)	478
EcoRII	CCWGG	1 cut(s)	407
FaiI	YATR	1 cut(s)	503
FokI	GGATG	4 cut(s)	6, 73, 358, 442
FspBI	CTAG	3 cut(s)	120, 299, 377
GlaI	GCGC	2 cut(s)	93, 294
GsaI	CCCAGC	1 cut(s)	434
HaeII	RGCGCY	1 cut(s)	296
HapII	CCGG	1 cut(s)	447
HgaI	GACGC	2 cut(s)	338, 387
HhaI	GCGC	2 cut(s)	94, 295
Hin1I	GRCGYC	2 cut(s)	349, 398
Hin6I	GCGC	2 cut(s)	92, 293
HinP1I	GCGC	2 cut(s)	92, 293
HinfI	GANTC	1 cut(s)	404
HpaII	CCGG	1 cut(s)	447
HphI	GGTGA	2 cut(s)	31, 248
Hpy188I	TCNGA	2 cut(s)	321, 403
Hpy188III	TCNNGA	2 cut(s)	447, 483
Hpy99I	CGWCG	3 cut(s)	243, 354, 388
HpyAV	CCTTC	6 cut(s)	34, 145, 172, 217, 236, 542
HpyCH4V	TGCA	1 cut(s)	331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	241, 299
HpyF3I	CTNAG	1 cut(s)	214
Hsp92I	GRCGYC	2 cut(s)	349, 398
HspAI	GCGC	2 cut(s)	92, 293
Kpn2I	TCCGGA	1 cut(s)	446
Kzo9I	GATC	2 cut(s)	75, 122
LmnI	GCTCC	2 cut(s)	417, 449
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	3 cut(s)	120, 299, 377
MalI	GATC	2 cut(s)	77, 124
MbiI	CCGCTC	1 cut(s)	444
MboI	GATC	2 cut(s)	75, 122
MboII	GAAGA	5 cut(s)	39, 53, 100, 221, 239
MflI	RGATCY	2 cut(s)	75, 122
MluCI	AATT	3 cut(s)	4, 14, 542
MmeI	TCCRAC	1 cut(s)	165
MroI	TCCGGA	1 cut(s)	446
MspI	CCGG	1 cut(s)	447
MspR9I	CCNGG	1 cut(s)	409
MvaI	CCWGG	1 cut(s)	409
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	2 cut(s)	241, 299
NdeII	GATC	2 cut(s)	75, 122
NlaIV	GGNNCC	3 cut(s)	188, 236, 413
PfeI	GAWTC	1 cut(s)	404
Psp6I	CCWGG	1 cut(s)	407
PspFI	CCCAGC	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	407
PspN4I	GGNNCC	3 cut(s)	188, 236, 413
PsuI	RGATCY	2 cut(s)	75, 122
Sau3AI	GATC	2 cut(s)	75, 122
ScrFI	CCNGG	1 cut(s)	409
SetI	ASST	7 cut(s)	137, 183, 209, 304, 312, 382, 513
SfaNI	GCATC	1 cut(s)	340
SmlI	CTYRAG	1 cut(s)	288
SmoI	CTYRAG	1 cut(s)	288
Sse9I	AATT	3 cut(s)	4, 14, 542
SsiI	CCGC	3 cut(s)	90, 190, 442
SspMI	CTAG	3 cut(s)	120, 299, 377
StyD4I	CCNGG	1 cut(s)	407
TaqI	TCGA	4 cut(s)	165, 352, 482, 507
TasI	AATT	3 cut(s)	4, 14, 542
TfiI	GAWTC	1 cut(s)	404
TspDTI	ATGAA	2 cut(s)	8, 17
XapI	RAATTY	2 cut(s)	4, 542
XspI	CTAG	3 cut(s)	120, 299, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.