Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

32451688 .. 32451936

Gene Structure 249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGATAATTACACTTTTTTTATGTATTGGATTTTGCAGGCCCATCACTCGAGCTTCCTTGAATCCTGCAAGAAGTTTTGGCCCGGCTGCCGTCACCAGTCCGTACAAGAACATTTGGGTTTATATTGCAGCACCTATTCTTGGAGCCATTGCTGCTACTGTGGTGTACAGTGTTCTCAGGGTACCTAAGCCAGTAAAATCTGATGAGAAGGCTGATCCAATATTAGCTAGAAATCCTTCACAAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0012506 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031410 GO:0031982 GO:0034220 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

83

Amino Acids

8.84

Weight (kDa)

9.92

Isoelectric Point (pI)

44.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	3 - 56	9.9e-14	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	181
AccB1I	GGYRCC	1 cut(s)	181
AclWI	GGATC	1 cut(s)	209
AfaI	GTAC	3 cut(s)	104, 167, 183
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	61
AluBI	AGCT	2 cut(s)	53, 227
AluI	AGCT	2 cut(s)	53, 227
AlwI	GGATC	1 cut(s)	209
Ama87I	CYCGRG	1 cut(s)	48
AoxI	GGCC	2 cut(s)	38, 79
ApeKI	GCWGC	3 cut(s)	86, 128, 152
Asp700I	GAANNNNTTC	1 cut(s)	235
Asp718I	GGTACC	1 cut(s)	181
AspS9I	GGNCC	2 cut(s)	39, 80
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	85
AvaI	CYCGRG	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	181
BbvI	GCAGC	3 cut(s)	73, 139, 140
BccI	CCATC	1 cut(s)	50
BceAI	ACGGC	1 cut(s)	74
BcnI	CCSGG	1 cut(s)	83
BfaI	CTAG	1 cut(s)	228
BisI	GCNGC	3 cut(s)	87, 129, 153
BlsI	GCNGC	3 cut(s)	88, 130, 154
Bme1390I	CCNGG	1 cut(s)	83
BmeT110I	CYCGRG	1 cut(s)	48
BmgT120I	GGNCC	2 cut(s)	39, 80
BmiI	GGNNCC	2 cut(s)	145, 183
BmrFI	CCNGG	1 cut(s)	83
Bpu10I	CCTNAGC	1 cut(s)	186
BpuMI	CCSGG	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse1I	ACTGG	2 cut(s)	96, 191
Bse3DI	GCAATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMI	GCAATG	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	190
BseNI	ACTGG	2 cut(s)	96, 191
BseXI	GCAGC	3 cut(s)	73, 139, 140
BshFI	GGCC	2 cut(s)	40, 81
BshNI	GGYRCC	1 cut(s)	181
BsiHKCI	CYCGRG	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	140
BsnI	GGCC	2 cut(s)	40, 81
BsoBI	CYCGRG	1 cut(s)	48
Bsp1407I	TGTACA	1 cut(s)	165
Bsp143I	GATC	1 cut(s)	214
BspANI	GGCC	2 cut(s)	40, 81
BspCNI	CTCAG	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	145, 183
BspPI	GGATC	1 cut(s)	209
BspT107I	GGYRCC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	147
BsrGI	TGTACA	1 cut(s)	165
BsrI	ACTGG	2 cut(s)	96, 191
BssMI	GATC	1 cut(s)	214
Bst4CI	ACNGT	2 cut(s)	160, 170
BstAUI	TGTACA	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	38
BstDEI	CTNAG	2 cut(s)	176, 186
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	81
BstV1I	GCAGC	3 cut(s)	73, 139, 140
BsuRI	GGCC	2 cut(s)	40, 81
BtsIMutI	CAGTG	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	38
Cfr13I	GGNCC	2 cut(s)	39, 80
Csp6I	GTAC	3 cut(s)	103, 166, 182
CviJI	RGCY	8 cut(s)	40, 53, 81, 86, 146, 190, 212, 227
CviKI_1	RGCY	8 cut(s)	40, 53, 81, 86, 146, 190, 212, 227
CviQI	GTAC	3 cut(s)	103, 166, 182
DdeI	CTNAG	2 cut(s)	176, 186
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
Eco88I	CYCGRG	1 cut(s)	48
FaiI	YATR	2 cut(s)	22, 123
Fnu4HI	GCNGC	3 cut(s)	87, 129, 153
Fsp4HI	GCNGC	3 cut(s)	87, 129, 153
FspBI	CTAG	1 cut(s)	228
GluI	GCNGC	3 cut(s)	87, 129, 153
HaeIII	GGCC	2 cut(s)	40, 81
HapII	CCGG	1 cut(s)	83
HinfI	GANTC	1 cut(s)	61
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	202, 248
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	2 cut(s)	202, 246
HpyCH4III	ACNGT	2 cut(s)	160, 170
HpyCH4V	TGCA	3 cut(s)	36, 68, 128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	2 cut(s)	176, 186
KpnI	GGTACC	1 cut(s)	185
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	6 cut(s)	22, 78, 96, 109, 163, 204
Lsp1109I	GCAGC	3 cut(s)	73, 139, 140
MaeI	CTAG	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MluCI	AATT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	235
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	1 cut(s)	152
NciI	CCSGG	1 cut(s)	83
NdeII	GATC	1 cut(s)	214
NlaIV	GGNNCC	2 cut(s)	145, 183
NmuCI	GTSAC	1 cut(s)	91
PaeR7I	CTCGAG	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	61
PkrI	GCNGC	3 cut(s)	88, 130, 154
PspN4I	GGNNCC	2 cut(s)	145, 183
PspPI	GGNCC	2 cut(s)	39, 80
PspXI	VCTCGAGB	1 cut(s)	48
RsaI	GTAC	3 cut(s)	104, 167, 183
RsaNI	GTAC	3 cut(s)	103, 166, 182
SatI	GCNGC	3 cut(s)	87, 129, 153
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	2 cut(s)	39, 80
ScrFI	CCNGG	1 cut(s)	83
SetI	ASST	4 cut(s)	55, 136, 187, 229
Sfr274I	CTCGAG	1 cut(s)	48
SlaI	CTCGAG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	48
SmoI	CTYRAG	1 cut(s)	48
Sse9I	AATT	1 cut(s)	6
SspI	AATATT	1 cut(s)	222
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	81
TaaI	ACNGT	2 cut(s)	160, 170
TaqI	TCGA	1 cut(s)	49
TasI	AATT	1 cut(s)	6
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	1 cut(s)	61
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	3 cut(s)	86, 128, 152
Tsp45I	GTSAC	1 cut(s)	91
TspGWI	ACGGA	1 cut(s)	90
TspRI	CASTG	1 cut(s)	175
XhoI	CTCGAG	1 cut(s)	48
XmnI	GAANNNNTTC	1 cut(s)	235
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.