pycom15g33810

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
33292625 .. 33292888
264 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 264 bp
ATGCATCGTTATTTAAATGTCCTCAAACTCAGCATCAATGGAAAAGCATGTTTAATGGCCCAGCAGAGAACAGATCTTTTAAGGAGAGACCACCTTTTGTTCTTCTTCCTTCCACGGCATGAATTCTTTACTGGCAATGAGTGGCAGAATATCAGCGAGCTTGAATTTTCATTTGAGCATAAGCACAAACCAATACGGGAAGAGATGATATCTGGGATTGGGATGTGTTTAGTGTACGAGGAAGATGTAGAAGCGGTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

88

Amino Acids

10.41

Weight (kDa)

5.91

Isoelectric Point (pI)

50.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 254
AcsI RAATTY 2 cut(s) 122, 164
AfaI GTAC 1 cut(s) 236
AgsI TTSAA 1 cut(s) 164
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw26I GTCTC 1 cut(s) 81
AoxI GGCC 1 cut(s) 57
ApoI RAATTY 2 cut(s) 122, 164
AspS9I GGNCC 1 cut(s) 58
BceAI ACGGC 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 81
BglII AGATCT 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 58
BmsI GCATC 2 cut(s) 13, 42
BsaI GGTCTC 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 113
BseGI GGATG 1 cut(s) 228
BseMI GCAATG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 43
BseNI ACTGG 1 cut(s) 136
BseYI CCCAGC 1 cut(s) 60
BshFI GGCC 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 81
BsnI GGCC 1 cut(s) 59
Bso31I GGTCTC 1 cut(s) 81
Bsp143I GATC 1 cut(s) 73
BspACI CCGC 1 cut(s) 254
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 42
BspTNI GGTCTC 1 cut(s) 81
BsrDI GCAATG 1 cut(s) 142
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 1 cut(s) 73
Bst6I CTCTTC 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 29
BstDSI CCRYGG 1 cut(s) 113
BstF5I GGATG 1 cut(s) 228
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 1 cut(s) 73
BstNSI RCATGY 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 1 cut(s) 59
BtgI CCRYGG 1 cut(s) 113
BtsCI GGATG 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 235
CviAII CATG 2 cut(s) 48, 119
CviJI RGCY 2 cut(s) 59, 160
CviKI_1 RGCY 2 cut(s) 59, 160
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 1 cut(s) 29
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
DraI TTTAAA 1 cut(s) 15
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco31I GGTCTC 1 cut(s) 81
Eco32I GATATC 1 cut(s) 210
EcoRI GAATTC 1 cut(s) 122
EcoRV GATATC 1 cut(s) 210
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 51, 122
FaiI YATR 3 cut(s) 49, 120, 180
FatI CATG 2 cut(s) 47, 118
FokI GGATG 1 cut(s) 235
GsaI CCCAGC 1 cut(s) 64
HaeIII GGCC 1 cut(s) 59
Hin1II CATG 2 cut(s) 51, 122
Hpy166II GTNNAC 1 cut(s) 235
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 1 cut(s) 119
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 29
Hsp92II CATG 2 cut(s) 51, 122
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 3 cut(s) 74, 117, 198
LweI GCATC 2 cut(s) 13, 42
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 4 cut(s) 94, 97, 212, 254
MflI RGATCY 1 cut(s) 73
MluCI AATT 2 cut(s) 122, 164
MnlI CCTC 2 cut(s) 32, 232
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 14, 53, 80
NdeII GATC 1 cut(s) 73
NlaIII CATG 2 cut(s) 51, 122
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 60
PspPI GGNCC 1 cut(s) 58
PsuI RGATCY 1 cut(s) 73
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SaqAI TTAA 3 cut(s) 14, 53, 80
Sau3AI GATC 1 cut(s) 73
Sau96I GGNCC 1 cut(s) 58
SetI ASST 2 cut(s) 96, 162
SfaNI GCATC 2 cut(s) 13, 42
SmiI ATTTAAAT 1 cut(s) 15
Sse9I AATT 2 cut(s) 122, 164
SsiI CCGC 1 cut(s) 254
SwaI ATTTAAAT 1 cut(s) 15
TasI AATT 2 cut(s) 122, 164
Tru1I TTAA 3 cut(s) 14, 53, 80
Tru9I TTAA 3 cut(s) 14, 53, 80
TspDTI ATGAA 2 cut(s) 135, 159
XapI RAATTY 2 cut(s) 122, 164
XceI RCATGY 1 cut(s) 51
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.