Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

35542910 .. 35544493

Gene Structure 1584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGATCGATCTTCAAAATACGTTCTTTTACAAGCTGTGTAAGAAGAAGACACTTGAGAATTTCAAGCACATAGTCCTGTTATCTTCACCACAGGATGGTTATGTTCCCTACCATTCCGCTAGAATAGATACGTGCCAGGCTGCTTCATTGGATTTCTCAAGGAAGGGAAAAGTGTTTCAGGAAATGCTGAGTGATTGCTTGGAACAGATACGGGCCCCTCAGTCTGAGAATCGAGTGTTCATGCGCTGTGACGTCAACTTTGATACCTCTTCTTATGGAAAGAACTTGAACACCTTCATAGGAAGGGCTGCTCATATTGAGTTTTTGGAGTCCGACATTTTTGCAAGATTCATCATGTGGTCTTTTCCAGACATATTTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004856 GO:0005975 GO:0005996 GO:0005997 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019321 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0046835 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3657 DUF676

Protein Analysis

128

Amino Acids

14.88

Weight (kDa)

7.68

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
AccB7I	CCANNNNNTGG	1 cut(s)	95
AciI	CCGC	1 cut(s)	117
AcsI	RAATTY	1 cut(s)	58
AcyI	GRCGYC	1 cut(s)	252
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	3 cut(s)	14, 64, 289
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	1 cut(s)	34
AluI	AGCT	1 cut(s)	34
AoxI	GGCC	1 cut(s)	213
ApaI	GGGCCC	1 cut(s)	217
ApeKI	GCWGC	2 cut(s)	140, 308
ApoI	RAATTY	1 cut(s)	58
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
Asp700I	GAANNNNTTC	1 cut(s)	293
AspLEI	GCGC	1 cut(s)	246
AspS9I	GGNCC	2 cut(s)	213, 214
AsuHPI	GGTGA	1 cut(s)	78
BaeGI	GKGCMC	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	217
BbsI	GAAGAC	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	127, 295
BccI	CCATC	1 cut(s)	89
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BciT130I	CCWGG	1 cut(s)	137
BfaI	CTAG	1 cut(s)	120
BisI	GCNGC	2 cut(s)	141, 309
BlsI	GCNGC	2 cut(s)	142, 310
Bme1390I	CCNGG	1 cut(s)	137
BmgT120I	GGNCC	2 cut(s)	213, 214
BmiI	GGNNCC	2 cut(s)	215, 216
BmrFI	CCNGG	1 cut(s)	137
BpiI	GAAGAC	1 cut(s)	53
BpuEI	CTTGAG	2 cut(s)	74, 142
Bsa29I	ATCGAT	1 cut(s)	6
BsaAI	YACGTR	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	137
BseCI	ATCGAT	1 cut(s)	6
BseGI	GGATG	1 cut(s)	100
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMII	CTCAG	3 cut(s)	179, 216, 233
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	2 cut(s)	127, 295
BshFI	GGCC	1 cut(s)	215
BshVI	ATCGAT	1 cut(s)	6
BslI	CCNNNNNNNGG	1 cut(s)	95
BsnI	GGCC	1 cut(s)	215
Bsp120I	GGGCCC	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	2 cut(s)	3, 7
BspACI	CCGC	1 cut(s)	117
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	3 cut(s)	180, 217, 232
BspDI	ATCGAT	1 cut(s)	6
BspLI	GGNNCC	2 cut(s)	215, 216
BssMI	GATC	2 cut(s)	3, 7
BssNI	GRCGYC	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	137
Bst6I	CTCTTC	1 cut(s)	274
BstACI	GRCGYC	1 cut(s)	252
BstBAI	YACGTR	1 cut(s)	132
BstDEI	CTNAG	3 cut(s)	188, 219, 225
BstF5I	GGATG	1 cut(s)	100
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	2 cut(s)	6, 10
BstMBI	GATC	2 cut(s)	3, 7
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	135
BstSLI	GKGCMC	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	127, 295
BstV2I	GAAGAC	1 cut(s)	53
Bsu15I	ATCGAT	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	215
BsuTUI	ATCGAT	1 cut(s)	6
BtsCI	GGATG	1 cut(s)	100
CfoI	GCGC	1 cut(s)	246
Cfr13I	GGNCC	2 cut(s)	213, 214
ClaI	ATCGAT	1 cut(s)	6
CviAII	CATG	2 cut(s)	241, 355
CviJI	RGCY	4 cut(s)	34, 140, 215, 308
CviKI_1	RGCY	4 cut(s)	34, 140, 215, 308
DdeI	CTNAG	3 cut(s)	188, 219, 225
DpnI	GATC	2 cut(s)	5, 9
DpnII	GATC	2 cut(s)	3, 7
Eam1104I	CTCTTC	1 cut(s)	274
EarI	CTCTTC	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	217
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	217
FaeI	CATG	2 cut(s)	244, 358
FaiI	YATR	8 cut(s)	71, 102, 242, 276, 299, 315, 356, 374
FatI	CATG	2 cut(s)	240, 354
Fnu4HI	GCNGC	2 cut(s)	141, 309
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	1 cut(s)	217
Fsp4HI	GCNGC	2 cut(s)	141, 309
FspBI	CTAG	1 cut(s)	120
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	2 cut(s)	141, 309
HaeIII	GGCC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	246
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	2 cut(s)	244, 358
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	3 cut(s)	229, 329, 348
HphI	GGTGA	1 cut(s)	78
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	2 cut(s)	226, 334
Hpy188III	TCNNGA	2 cut(s)	179, 368
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	3 cut(s)	157, 297, 304
HpyCH4IV	ACGT	3 cut(s)	20, 131, 252
HpyCH4V	TGCA	1 cut(s)	344
HpyF3I	CTNAG	3 cut(s)	188, 219, 225
HpySE526I	ACGT	3 cut(s)	20, 131, 252
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	244, 358
HspAI	GCGC	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	3, 7
LpnPI	CCDG	5 cut(s)	77, 89, 122, 149, 164
Lsp1109I	GCAGC	2 cut(s)	127, 295
MaeI	CTAG	1 cut(s)	120
MaeII	ACGT	3 cut(s)	20, 131, 252
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	2 cut(s)	5, 9
MboI	GATC	2 cut(s)	3, 7
MboII	GAAGA	4 cut(s)	55, 58, 75, 261
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	1 cut(s)	58
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	2 cut(s)	228, 277
MroXI	GAANNNNTTC	1 cut(s)	293
MspR9I	CCNGG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	137
NdeII	GATC	2 cut(s)	3, 7
NlaIII	CATG	2 cut(s)	244, 358
NlaIV	GGNNCC	2 cut(s)	215, 216
NmuCI	GTSAC	1 cut(s)	248
PdmI	GAANNNNTTC	1 cut(s)	293
PfeI	GAWTC	2 cut(s)	229, 348
PflMI	CCANNNNNTGG	1 cut(s)	95
PkrI	GCNGC	2 cut(s)	142, 310
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
Ppu21I	YACGTR	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	215, 216
PspOMI	GGGCCC	1 cut(s)	213
PspPI	GGNCC	2 cut(s)	213, 214
SatI	GCNGC	2 cut(s)	141, 309
Sau3AI	GATC	2 cut(s)	3, 7
Sau96I	GGNCC	2 cut(s)	213, 214
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	6 cut(s)	23, 36, 134, 255, 269, 296
SmlI	CTYRAG	2 cut(s)	53, 157
SmoI	CTYRAG	2 cut(s)	53, 157
Sse9I	AATT	1 cut(s)	58
SsiI	CCGC	1 cut(s)	117
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	135
TaiI	ACGT	3 cut(s)	23, 134, 255
TaqI	TCGA	2 cut(s)	6, 232
TasI	AATT	1 cut(s)	58
TfiI	GAWTC	2 cut(s)	229, 348
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	2 cut(s)	140, 308
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	4 cut(s)	135, 229, 286, 340
Van91I	CCANNNNNTGG	1 cut(s)	95
XapI	RAATTY	1 cut(s)	58
XmnI	GAANNNNTTC	1 cut(s)	293
XspI	CTAG	1 cut(s)	120
ZraI	GACGTC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.