Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

35775242 .. 35780178

Gene Structure 4937 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAAGAATGATATAAAAGATTATTTGACATCAAGGAACATTCAGTGGGAAGAAAGTGCGGACTTAATGGAAGTTGCTTCTAAGTGTGATGTTGTGTATCAAACTCGCATTCAGCGTGAACGATTTGGAGAGAGAATTGACCTCTATGAAGAAGCTCGAGGCAAGTACATTGTGGATAGTCGTGTGTTAGAGGTGATGCAGAAGCACGCTGTGGTCATGCACCCTCTGCCTAGACTTGACGAGATTACCGTGGATGTTGATGGGGATACACGAGCTGCCTATTTCAGACAAGCAAAGAACGGCCTATATATAAGGATGGCTCTCTTGAAACTCCTACTTGTAGGGTGCCTGTTGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004070 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009165 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016740 GO:0016741 GO:0016743 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034641 GO:0034654 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046390 GO:0046483 GO:0050896 GO:0051716 GO:0055086 GO:0071496 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko00250 ko01100 map00240 map00250 map01100

Pfam Domains

Protein Families

OTCace OTCace_N

Protein Analysis

120

Amino Acids

13.85

Weight (kDa)

6.12

Isoelectric Point (pI)

25.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OTCace	PF00185	6 - 111	2.3e-24	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	345
AciI	CCGC	1 cut(s)	59
AdeI	CACNNNGTG	1 cut(s)	211
AfaI	GTAC	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	328
AluBI	AGCT	2 cut(s)	155, 275
AluI	AGCT	2 cut(s)	155, 275
Ama87I	CYCGRG	1 cut(s)	156
AoxI	GGCC	1 cut(s)	301
ApeKI	GCWGC	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	205
AvaI	CYCGRG	1 cut(s)	156
BanI	GGYRCC	1 cut(s)	345
BauI	CACGAG	1 cut(s)	270
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	2 cut(s)	254, 310
BceAI	ACGGC	1 cut(s)	316
BciVI	GTATCC	1 cut(s)	259
BfaI	CTAG	1 cut(s)	231
BfuI	GTATCC	1 cut(s)	259
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
BmeT110I	CYCGRG	1 cut(s)	156
BmiI	GGNNCC	1 cut(s)	347
BmsI	GCATC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	2 cut(s)	259, 321
BseXI	GCAGC	1 cut(s)	262
BshFI	GGCC	1 cut(s)	303
BshNI	GGYRCC	1 cut(s)	345
BsiHKCI	CYCGRG	1 cut(s)	156
BsmI	GAATGC	1 cut(s)	108
BsnI	GGCC	1 cut(s)	303
BsoBI	CYCGRG	1 cut(s)	156
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	347
BspT107I	GGYRCC	1 cut(s)	345
BssECI	CCNNGG	1 cut(s)	249
BssSI	CACGAG	1 cut(s)	270
Bst2BI	CACGAG	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	250
BstAPI	GCANNNNNTGC	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	81
BstDSI	CCRYGG	1 cut(s)	249
BstF5I	GGATG	2 cut(s)	259, 321
BstMWI	GCNNNNNNNGC	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	262
BsuI	GTATCC	1 cut(s)	259
BsuRI	GGCC	1 cut(s)	303
BtgI	CCRYGG	1 cut(s)	249
BtsCI	GGATG	2 cut(s)	259, 321
BtsIMutI	CAGTG	1 cut(s)	50
Cac8I	GCNNGC	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	4 cut(s)	155, 275, 303, 320
CviKI_1	RGCY	4 cut(s)	155, 275, 303, 320
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	1 cut(s)	81
DraIII	CACNNNGTG	1 cut(s)	211
Eco88I	CYCGRG	1 cut(s)	156
FaeI	CATG	1 cut(s)	220
FaiI	YATR	6 cut(s)	14, 147, 218, 307, 309, 311
FatI	CATG	1 cut(s)	216
Fnu4HI	GCNGC	1 cut(s)	276
FokI	GGATG	2 cut(s)	266, 328
Fsp4HI	GCNGC	1 cut(s)	276
FspBI	CTAG	1 cut(s)	231
GluI	GCNGC	1 cut(s)	276
HaeIII	GGCC	1 cut(s)	303
Hin1II	CATG	1 cut(s)	220
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	287
Hpy188III	TCNNGA	1 cut(s)	325
Hpy8I	GTNNAC	1 cut(s)	119
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4V	TGCA	2 cut(s)	199, 220
HpyF10VI	GCNNNNNNNGC	1 cut(s)	226
HpyF3I	CTNAG	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	220
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	1 cut(s)	186
MaeI	CTAG	1 cut(s)	231
MboII	GAAGA	3 cut(s)	16, 62, 161
MluCI	AATT	1 cut(s)	135
MnlI	CCTC	4 cut(s)	152, 152, 184, 234
MseI	TTAA	1 cut(s)	65
Mva1269I	GAATGC	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	226
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	1 cut(s)	347
PaeR7I	CTCGAG	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	2 cut(s)	112, 246
PctI	GAATGC	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	347
PspXI	VCTCGAGB	1 cut(s)	156
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	1 cut(s)	276
SetI	ASST	4 cut(s)	144, 157, 195, 277
SfaNI	GCATC	1 cut(s)	186
Sfr274I	CTCGAG	1 cut(s)	156
SlaI	CTCGAG	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
Sse9I	AATT	1 cut(s)	135
SsiI	CCGC	1 cut(s)	59
SspMI	CTAG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	250
TaqI	TCGA	1 cut(s)	157
TasI	AATT	1 cut(s)	135
TatI	WGTACW	1 cut(s)	165
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	1 cut(s)	50
TseI	GCWGC	1 cut(s)	275
TspDTI	ATGAA	2 cut(s)	17, 162
TspRI	CASTG	1 cut(s)	50
XhoI	CTCGAG	1 cut(s)	156
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.