Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

36035747 .. 36038089

Gene Structure 2343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGACTCAAATTATCATTTGTGCCAACATTTTACTTCTAAAGACACAATTATTTATTTTTTATTATTTTTCAAATACTTAAGGCCCGCACATACCCCACTTTCTCTGCATTTCTGTCTCTTTCAGTTAACCCACCCACACCCCACTTTCCTCCTTAACCCACCCACACCTCAACCAAACAAAATCTATGCATCTCTCTCTACCACTCTCACTTCTGTCATCGATCTGAGATTTTCTTTCGTTTTTTTCTTGGAAAAACAATTGTACGTCAGATTTGAGAAACACCAACGCCTCCGCATCTCTCTCTATCTCAATCGATCCGTCTCTCCCTCTCGTTGCATCTCACGCTCAGATCCCAACTGTCTGTCGTTTGAGAAAGAACTTGAAGAAATGCAAGAGAAGCTTCAGTTCAAGAAGGAAGAGCTCCAAACAAAGGGCCAAGAGCAAGACAAGCTTCAGATGGAGTTGAAGAAGCTGCAGGACTTCAAACTCGTCGAGTCAGTTAAGTCTGAGATCGGATCTAAGATTCTGAGGAAGCACCATCGTCTTCACTATTCCTCAGATCAATGCCATAAGGAGAGTGGTTTGCATGCGATAATCTTTGATGAAATGGATGCTATTTGTAAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002790 GO:0005575 GO:0006810 GO:0006897 GO:0006909 GO:0006928 GO:0008104 GO:0008150 GO:0009306 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0032940 GO:0033036 GO:0040011 GO:0042886 GO:0045184 GO:0046903 GO:0048870 GO:0051179 GO:0051234 GO:0051674 GO:0071702 GO:0071705 GO:0098657

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 ko04727 ko04962 map04138 map04721 map04727 map04962

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N

Protein Analysis

211

Amino Acids

24.91

Weight (kDa)

8.82

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	87, 295
AclWI	GGATC	3 cut(s)	312, 347, 526
AcuI	CTGAAG	2 cut(s)	389, 440
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	433
AflII	CTTAAG	1 cut(s)	79
AgsI	TTSAA	5 cut(s)	73, 386, 412, 469, 487
AluBI	AGCT	4 cut(s)	403, 424, 454, 475
AluI	AGCT	4 cut(s)	403, 424, 454, 475
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	2 cut(s)	122, 328
AlwI	GGATC	3 cut(s)	312, 347, 526
AoxI	GGCC	2 cut(s)	83, 436
ApeKI	GCWGC	1 cut(s)	475
AspS9I	GGNCC	2 cut(s)	84, 436
BanII	GRGCYC	1 cut(s)	426
BbsI	GAAGAC	1 cut(s)	539
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	1 cut(s)	462
BccI	CCATC	2 cut(s)	454, 549
BcoDI	GTCTC	2 cut(s)	122, 328
BfmI	CTRYAG	1 cut(s)	476
BfrI	CTTAAG	1 cut(s)	79
BisI	GCNGC	1 cut(s)	476
BlsI	GCNGC	1 cut(s)	477
BmgT120I	GGNCC	2 cut(s)	84, 436
BmsI	GCATC	4 cut(s)	200, 306, 348, 604
BpiI	GAAGAC	1 cut(s)	539
Bsa29I	ATCGAT	2 cut(s)	222, 316
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
BseCI	ATCGAT	2 cut(s)	222, 316
BseGI	GGATG	1 cut(s)	619
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMII	CTCAG	5 cut(s)	218, 363, 501, 521, 573
BseXI	GCAGC	1 cut(s)	462
BshFI	GGCC	2 cut(s)	85, 438
BshVI	ATCGAT	2 cut(s)	222, 316
BsiHKAI	GWGCWC	1 cut(s)	426
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmAI	GTCTC	2 cut(s)	122, 328
BsmBI	CGTCTC	1 cut(s)	328
BsnI	GGCC	2 cut(s)	85, 438
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp143I	GATC	6 cut(s)	223, 317, 352, 513, 518, 562
BspACI	CCGC	2 cut(s)	87, 295
BspANI	GGCC	2 cut(s)	85, 438
BspCNI	CTCAG	5 cut(s)	219, 362, 502, 522, 572
BspDI	ATCGAT	2 cut(s)	222, 316
BspMAI	CTGCAG	1 cut(s)	480
BspPI	GGATC	3 cut(s)	312, 347, 526
BspQI	GCTCTTC	1 cut(s)	414
BspTI	CTTAAG	1 cut(s)	79
BssMI	GATC	6 cut(s)	223, 317, 352, 513, 518, 562
Bst4CI	ACNGT	1 cut(s)	362
Bst6I	CTCTTC	1 cut(s)	414
BstAFI	CTTAAG	1 cut(s)	79
BstC8I	GCNNGC	2 cut(s)	87, 591
BstDEI	CTNAG	6 cut(s)	227, 349, 510, 522, 530, 559
BstF5I	GGATG	1 cut(s)	619
BstKTI	GATC	6 cut(s)	226, 320, 355, 516, 521, 565
BstMAI	GTCTC	2 cut(s)	122, 328
BstMBI	GATC	6 cut(s)	223, 317, 352, 513, 518, 562
BstMWI	GCNNNNNNNGC	3 cut(s)	345, 400, 451
BstNSI	RCATGY	1 cut(s)	593
BstSFI	CTRYAG	1 cut(s)	476
BstV1I	GCAGC	1 cut(s)	462
BstV2I	GAAGAC	1 cut(s)	539
BstX2I	RGATCY	2 cut(s)	352, 518
BstYI	RGATCY	2 cut(s)	352, 518
Bsu15I	ATCGAT	2 cut(s)	222, 316
BsuRI	GGCC	2 cut(s)	85, 438
BsuTUI	ATCGAT	2 cut(s)	222, 316
BtsCI	GGATG	1 cut(s)	619
Cac8I	GCNNGC	2 cut(s)	87, 591
Cfr13I	GGNCC	2 cut(s)	84, 436
ClaI	ATCGAT	2 cut(s)	222, 316
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	1 cut(s)	590
CviJI	RGCY	6 cut(s)	85, 403, 424, 438, 454, 475
CviKI_1	RGCY	6 cut(s)	85, 403, 424, 438, 454, 475
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	6 cut(s)	227, 349, 510, 522, 530, 559
DpnI	GATC	6 cut(s)	225, 319, 354, 515, 520, 564
DpnII	GATC	6 cut(s)	223, 317, 352, 513, 518, 562
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
Ecl136II	GAGCTC	1 cut(s)	424
Eco24I	GRGCYC	1 cut(s)	426
Eco53kI	GAGCTC	1 cut(s)	424
Eco57I	CTGAAG	2 cut(s)	389, 440
EcoICRI	GAGCTC	1 cut(s)	424
EcoT22I	ATGCAT	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	426
Esp3I	CGTCTC	1 cut(s)	328
FaeI	CATG	1 cut(s)	593
FaiI	YATR	5 cut(s)	93, 189, 573, 591, 631
FalI	AAGNNNNNCTT	4 cut(s)	387, 419, 438, 470
FatI	CATG	1 cut(s)	589
FauI	CCCGC	1 cut(s)	94
Fnu4HI	GCNGC	1 cut(s)	476
FokI	GGATG	1 cut(s)	626
FriOI	GRGCYC	1 cut(s)	426
Fsp4HI	GCNGC	1 cut(s)	476
GluI	GCNGC	1 cut(s)	476
HaeIII	GGCC	2 cut(s)	85, 438
Hin1II	CATG	1 cut(s)	593
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HindIII	AAGCTT	2 cut(s)	401, 452
HinfI	GANTC	3 cut(s)	5, 497, 526
HpaI	GTTAAC	1 cut(s)	129
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188I	TCNGA	8 cut(s)	228, 272, 352, 459, 511, 518, 531, 562
Hpy188III	TCNNGA	1 cut(s)	412
Hpy8I	GTNNAC	1 cut(s)	129
Hpy99I	CGWCG	1 cut(s)	497
HpyAV	CCTTC	1 cut(s)	409
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	6 cut(s)	109, 191, 339, 394, 478, 589
HpyF10VI	GCNNNNNNNGC	3 cut(s)	345, 400, 451
HpyF3I	CTNAG	6 cut(s)	227, 349, 510, 522, 530, 559
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	1 cut(s)	593
KspAI	GTTAAC	1 cut(s)	129
Kzo9I	GATC	6 cut(s)	223, 317, 352, 513, 518, 562
LguI	GCTCTTC	1 cut(s)	414
LmnI	GCTCC	1 cut(s)	429
LpnPI	CCDG	1 cut(s)	464
Lsp1109I	GCAGC	1 cut(s)	462
LweI	GCATC	4 cut(s)	200, 306, 348, 604
MaeII	ACGT	1 cut(s)	267
MalI	GATC	6 cut(s)	225, 319, 354, 515, 520, 564
MboI	GATC	6 cut(s)	223, 317, 352, 513, 518, 562
MboII	GAAGA	4 cut(s)	398, 431, 481, 539
MfeI	CAATTG	1 cut(s)	260
MflI	RGATCY	2 cut(s)	352, 518
MhlI	GDGCHC	1 cut(s)	426
MluCI	AATT	3 cut(s)	10, 48, 260
MlyI	GAGTC	1 cut(s)	506
MnlI	CCTC	6 cut(s)	161, 180, 302, 340, 525, 568
Mph1103I	ATGCAT	1 cut(s)	193
MseI	TTAA	4 cut(s)	80, 128, 156, 504
MspCI	CTTAAG	1 cut(s)	79
MunI	CAATTG	1 cut(s)	260
MwoI	GCNNNNNNNGC	3 cut(s)	345, 400, 451
NdeII	GATC	6 cut(s)	223, 317, 352, 513, 518, 562
NlaIII	CATG	1 cut(s)	593
NsiI	ATGCAT	1 cut(s)	193
NspI	RCATGY	1 cut(s)	593
PaeI	GCATGC	1 cut(s)	593
PciSI	GCTCTTC	1 cut(s)	414
PfeI	GAWTC	1 cut(s)	526
PkrI	GCNGC	1 cut(s)	477
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
Psp124BI	GAGCTC	1 cut(s)	426
PspPI	GGNCC	2 cut(s)	84, 436
PstI	CTGCAG	1 cut(s)	480
PsuI	RGATCY	2 cut(s)	352, 518
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SacI	GAGCTC	1 cut(s)	426
SapI	GCTCTTC	1 cut(s)	414
SaqAI	TTAA	4 cut(s)	80, 128, 156, 504
SatI	GCNGC	1 cut(s)	476
Sau3AI	GATC	6 cut(s)	223, 317, 352, 513, 518, 562
Sau96I	GGNCC	2 cut(s)	84, 436
SchI	GAGTC	1 cut(s)	506
SduI	GDGCHC	1 cut(s)	426
SetI	ASST	7 cut(s)	172, 270, 405, 426, 456, 477, 630
SfaNI	GCATC	4 cut(s)	200, 306, 348, 604
SfcI	CTRYAG	1 cut(s)	476
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
SphI	GCATGC	1 cut(s)	593
Sse9I	AATT	3 cut(s)	10, 48, 260
SsiI	CCGC	2 cut(s)	87, 295
SstI	GAGCTC	1 cut(s)	426
TaaI	ACNGT	1 cut(s)	362
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	3 cut(s)	222, 316, 495
TasI	AATT	3 cut(s)	10, 48, 260
TfiI	GAWTC	1 cut(s)	526
Tru1I	TTAA	4 cut(s)	80, 128, 156, 504
Tru9I	TTAA	4 cut(s)	80, 128, 156, 504
TseI	GCWGC	1 cut(s)	475
TspDTI	ATGAA	1 cut(s)	621
TspGWI	ACGGA	1 cut(s)	310
Vha464I	CTTAAG	1 cut(s)	79
XceI	RCATGY	1 cut(s)	593
XcmI	CCANNNNNNNNNTGG	1 cut(s)	578
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.