Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

36218817 .. 36220745

Gene Structure 1929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGTCGGAGCCTCAGCAGCCAATCGTCCTCTCCGACGAAGAAGAAGACCGAAATGCGCTCTCTTCAACCCCTCCATTTCAATCATTCCACCACTCTAAGAGACGCCGAACAGAACTCGTTCCATACCCGAATCCTCCTCCTCCTCCTCCTACCGTTCTCGTCCTCGACGACGACGACGATGGTCCCGCCTCCTCCCGCTACTTGGTCCTCGACGAGTCTCCATGCACAAAAGCACCTTCGGACTTCCAAACCCAAACTAGGGTTTCACATTCCCAACACAAATTCTCCGGTTGGCTGTTTGATTTCTGTTTTTGTTTCAACTACGGTTTCCGTAACACTAATTGTGAAATTGCTTATTACTTGCCATGCGCCGATGGATTGGTATGCTTGGAATCTGACGATGAGTGTGAAAGTGGTTGTGGAATGGGAAAGGAGAAGGAGAATGAATCAGCTGCTAGTGGTTCTGGTGTGCTGAAGGACTTAGGTTGGATATCCGAATTTGACGAGTCCCCATGTTCTTTTGGTATGTTAAGGGTATTTGGTTATCCTGACAAAGAAAATAGAACGGATCAGACGAGAAACATTGTGAAACAGAGGAGAAAAACTAAAGCAAATTCTGAAAACGAAAATATTGCACAAGCAACGGACAAAAAGAAGATGGCGAAAGAGGAAAGGATACGCCAAAGGGAAGAAAAGAATAAAAAAGAGCACGAAGAGAAGCTGCAAAGAACATATCTGAAAGCTGAAGCAGCAAAAATGAAAAAACTTGAGAAAGAAAAGCAAAAGTGGGAAAAAGGAAAGTTTGCTCTAAAATCCATTGTGGCTGAGATTGATACGAAAGTATTGGAATTGGGGTCAGTTGGAGGTGTGGCCTTAATATTATTCTCCATCTGTGTATGTATCTCGCATTATTTCATATATTGTAGCTCAGAAGTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0006139 GO:0006259 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009987 GO:0010212 GO:0010332 GO:0016787 GO:0016788 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

ERCC4

Protein Analysis

314

Amino Acids

35.58

Weight (kDa)

5.7

Isoelectric Point (pI)

59.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	186, 196
AclWI	GGATC	1 cut(s)	576
AcsI	RAATTY	3 cut(s)	281, 497, 613
AcuI	CTGAAG	2 cut(s)	494, 765
AcyI	GRCGYC	1 cut(s)	103
AfiI	CCNNNNNNNGG	3 cut(s)	202, 258, 259
AgsI	TTSAA	3 cut(s)	66, 80, 319
AluBI	AGCT	4 cut(s)	452, 721, 743, 927
AluI	AGCT	4 cut(s)	452, 721, 743, 927
Alw21I	GWGCWC	1 cut(s)	711
Alw26I	GTCTC	2 cut(s)	94, 222
AlwI	GGATC	1 cut(s)	576
AoxI	GGCC	1 cut(s)	870
ApeKI	GCWGC	4 cut(s)	16, 452, 721, 749
ApoI	RAATTY	3 cut(s)	281, 497, 613
Asp700I	GAANNNNTTC	1 cut(s)	117
AspLEI	GCGC	2 cut(s)	58, 371
AspS9I	GGNCC	2 cut(s)	182, 205
AvaII	GGWCC	2 cut(s)	182, 205
BaeI	ACNNNNGTAYC	2 cut(s)	825, 858
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	711
BbvCI	CCTCAGC	1 cut(s)	12
BbvI	GCAGC	4 cut(s)	28, 439, 708, 761
BccI	CCATC	4 cut(s)	173, 368, 652, 896
BcgI	CGANNNNNNTGC	2 cut(s)	614, 648
BciVI	GTATCC	1 cut(s)	669
BcoDI	GTCTC	2 cut(s)	94, 222
BfaI	CTAG	2 cut(s)	258, 456
BfuI	GTATCC	1 cut(s)	669
BisI	GCNGC	4 cut(s)	17, 453, 722, 750
BlsI	GCNGC	4 cut(s)	18, 454, 723, 751
Bme18I	GGWCC	2 cut(s)	182, 205
BmgT120I	GGNCC	2 cut(s)	182, 205
BmiI	GGNNCC	2 cut(s)	9, 184
BoxI	GACNNNNGTC	1 cut(s)	180
BpiI	GAAGAC	1 cut(s)	51
Bpu10I	CCTNAGC	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	788
BsaHI	GRCGYC	1 cut(s)	103
BsaWI	WCCGGW	1 cut(s)	287
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 258, 259
BseLI	CCNNNNNNNGG	3 cut(s)	202, 258, 259
BseMII	CTCAG	3 cut(s)	26, 816, 942
BseRI	GAGGAG	6 cut(s)	126, 129, 132, 135, 181, 610
BseXI	GCAGC	4 cut(s)	28, 439, 708, 761
BshFI	GGCC	1 cut(s)	872
BsiHKAI	GWGCWC	1 cut(s)	711
BsiSI	CCGG	1 cut(s)	288
BslFI	GGGAC	2 cut(s)	168, 493
BslI	CCNNNNNNNGG	3 cut(s)	202, 258, 259
BsmAI	GTCTC	2 cut(s)	94, 222
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	2 cut(s)	168, 493
BsnI	GGCC	1 cut(s)	872
Bsp1286I	GDGCHC	1 cut(s)	711
Bsp143I	GATC	1 cut(s)	568
BspACI	CCGC	2 cut(s)	186, 196
BspANI	GGCC	1 cut(s)	872
BspCNI	CTCAG	3 cut(s)	25, 817, 941
BspLI	GGNNCC	2 cut(s)	9, 184
BspPI	GGATC	1 cut(s)	576
BssMI	GATC	1 cut(s)	568
BssNI	GRCGYC	1 cut(s)	103
Bst4CI	ACNGT	2 cut(s)	154, 326
Bst6I	CTCTTC	2 cut(s)	67, 708
BstACI	GRCGYC	1 cut(s)	103
BstDEI	CTNAG	5 cut(s)	12, 96, 481, 825, 928
BstHHI	GCGC	2 cut(s)	58, 371
BstKTI	GATC	1 cut(s)	571
BstMAI	GTCTC	2 cut(s)	94, 222
BstMBI	GATC	1 cut(s)	568
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 749
BstPAI	GACNNNNGTC	1 cut(s)	180
BstV1I	GCAGC	4 cut(s)	28, 439, 708, 761
BstV2I	GAAGAC	1 cut(s)	51
BsuI	GTATCC	1 cut(s)	669
BsuRI	GGCC	1 cut(s)	872
CfoI	GCGC	2 cut(s)	58, 371
Cfr13I	GGNCC	2 cut(s)	182, 205
CseI	GACGC	1 cut(s)	111
CviAII	CATG	3 cut(s)	222, 366, 513
CviJI	RGCY	9 cut(s)	10, 19, 295, 452, 721, 743, 824, 872, 927
CviKI_1	RGCY	9 cut(s)	10, 19, 295, 452, 721, 743, 824, 872, 927
DdeI	CTNAG	5 cut(s)	12, 96, 481, 825, 928
DpnI	GATC	1 cut(s)	570
DpnII	GATC	1 cut(s)	568
Eam1104I	CTCTTC	2 cut(s)	67, 708
EarI	CTCTTC	2 cut(s)	67, 708
Eco32I	GATATC	1 cut(s)	492
Eco47I	GGWCC	2 cut(s)	182, 205
Eco57I	CTGAAG	2 cut(s)	494, 765
EcoRV	GATATC	1 cut(s)	492
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	3 cut(s)	225, 369, 516
FaqI	GGGAC	2 cut(s)	168, 493
FatI	CATG	3 cut(s)	221, 365, 512
FauI	CCCGC	2 cut(s)	193, 203
Fnu4HI	GCNGC	4 cut(s)	17, 453, 722, 750
Fsp4HI	GCNGC	4 cut(s)	17, 453, 722, 750
FspBI	CTAG	2 cut(s)	258, 456
GlaI	GCGC	2 cut(s)	57, 370
GluI	GCNGC	4 cut(s)	17, 453, 722, 750
HaeIII	GGCC	1 cut(s)	872
HapII	CCGG	1 cut(s)	288
HgaI	GACGC	1 cut(s)	111
HhaI	GCGC	2 cut(s)	58, 371
Hin1I	GRCGYC	1 cut(s)	103
Hin1II	CATG	3 cut(s)	225, 369, 516
Hin6I	GCGC	2 cut(s)	56, 369
HinP1I	GCGC	2 cut(s)	56, 369
HinfI	GANTC	5 cut(s)	130, 215, 392, 446, 506
HpaII	CCGG	1 cut(s)	288
Hpy188I	TCNGA	9 cut(s)	7, 34, 241, 397, 496, 573, 619, 738, 931
Hpy188III	TCNNGA	1 cut(s)	548
Hpy99I	CGWCG	6 cut(s)	38, 170, 173, 176, 179, 215
HpyAV	CCTTC	3 cut(s)	246, 430, 469
HpyCH4III	ACNGT	2 cut(s)	154, 326
HpyCH4V	TGCA	3 cut(s)	225, 635, 724
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 749
HpyF3I	CTNAG	5 cut(s)	12, 96, 481, 825, 928
Hsp92I	GRCGYC	1 cut(s)	103
Hsp92II	CATG	3 cut(s)	225, 369, 516
HspAI	GCGC	2 cut(s)	56, 369
Kzo9I	GATC	1 cut(s)	568
LmnI	GCTCC	1 cut(s)	7
LpnPI	CCDG	3 cut(s)	301, 450, 561
Lsp1109I	GCAGC	4 cut(s)	28, 439, 708, 761
MaeI	CTAG	2 cut(s)	258, 456
MaeIII	GTNAC	1 cut(s)	332
MalI	GATC	1 cut(s)	570
MboI	GATC	1 cut(s)	568
MboII	GAAGA	7 cut(s)	50, 53, 54, 56, 667, 701, 725
MhlI	GDGCHC	1 cut(s)	711
MluCI	AATT	6 cut(s)	281, 340, 348, 497, 613, 848
MlyI	GAGTC	2 cut(s)	224, 515
MmeI	TCCRAC	3 cut(s)	57, 467, 841
MroXI	GAANNNNTTC	1 cut(s)	117
MseI	TTAA	2 cut(s)	530, 875
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	2 cut(s)	16, 749
NdeII	GATC	1 cut(s)	568
NlaIII	CATG	3 cut(s)	225, 369, 516
NlaIV	GGNNCC	2 cut(s)	9, 184
PcsI	WCGNNNNNNNCGW	5 cut(s)	30, 165, 171, 174, 572
PdmI	GAANNNNTTC	1 cut(s)	117
PfeI	GAWTC	3 cut(s)	130, 392, 446
PkrI	GCNGC	4 cut(s)	18, 454, 723, 751
PleI	GAGTC	2 cut(s)	223, 514
PpsI	GAGTC	2 cut(s)	223, 514
PshAI	GACNNNNGTC	1 cut(s)	180
PspN4I	GGNNCC	2 cut(s)	9, 184
PspPI	GGNCC	2 cut(s)	182, 205
PvuII	CAGCTG	1 cut(s)	452
SaqAI	TTAA	2 cut(s)	530, 875
SatI	GCNGC	4 cut(s)	17, 453, 722, 750
Sau3AI	GATC	1 cut(s)	568
Sau96I	GGNCC	2 cut(s)	182, 205
SchI	GAGTC	2 cut(s)	224, 515
SduI	GDGCHC	1 cut(s)	711
SetI	ASST	7 cut(s)	238, 454, 487, 723, 745, 868, 929
SinI	GGWCC	2 cut(s)	182, 205
SmlI	CTYRAG	1 cut(s)	767
SmoI	CTYRAG	1 cut(s)	767
Sse9I	AATT	6 cut(s)	281, 340, 348, 497, 613, 848
SsiI	CCGC	2 cut(s)	186, 196
SspI	AATATT	2 cut(s)	631, 879
SspMI	CTAG	2 cut(s)	258, 456
TaaI	ACNGT	2 cut(s)	154, 326
TaqI	TCGA	2 cut(s)	165, 210
TaqII	GACCGA	1 cut(s)	63
TasI	AATT	6 cut(s)	281, 340, 348, 497, 613, 848
TfiI	GAWTC	3 cut(s)	130, 392, 446
Tru1I	TTAA	2 cut(s)	530, 875
Tru9I	TTAA	2 cut(s)	530, 875
TseI	GCWGC	4 cut(s)	16, 452, 721, 749
TspDTI	ATGAA	3 cut(s)	459, 773, 904
TspGWI	ACGGA	3 cut(s)	320, 581, 659
VpaK11BI	GGWCC	2 cut(s)	182, 205
XapI	RAATTY	3 cut(s)	281, 497, 613
XmnI	GAANNNNTTC	1 cut(s)	117
XspI	CTAG	2 cut(s)	258, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.