pycom15g36150

Crossover junction endonuclease

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
36222875 .. 36223863
989 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 351 bp
ATGCATAATTCGCAAAGGCATACTTACATCCAGCAGCAAGTTTGCGAAAAGGAATTTCTGCTCAAGGACTTGATAACGGAGGGTTTACTCGGCGATGACAGAAGATTGGGTGAGGTTTGTTCCAGAAGAGTGTACAGAATACTTATGGCACAAAGTGGATCCATTAAAACTGATGATGTTGAGGACGGTGCTGATTTGTTCAGATATACAAATTTGTACTATGGTTCGGTTTTGGTTTATTTTTCTCCTAAAACTTTTTCGCTTCGGTATTCGAGTTGGGGTTTTCGGTTCGATTACCAAACCAAAACCAGTCCTATGTATGGTAGCGTAAACACATCAATTGATCAATAA

Protein Analysis

117

Amino Acids

13.55

Weight (kDa)

6.71

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 153, 166
AcsI RAATTY 2 cut(s) 53, 211
AdeI CACNNNGTG 1 cut(s) 155
AfaI GTAC 2 cut(s) 134, 218
AfiI CCNNNNNNNGG 1 cut(s) 320
AlwI GGATC 2 cut(s) 153, 166
ApeKI GCWGC 1 cut(s) 34
ApoI RAATTY 2 cut(s) 53, 211
AsuHPI GGTGA 1 cut(s) 122
BamHI GGATCC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 46
BclI TGATCA 1 cut(s) 343
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 160
BpuEI CTTGAG 1 cut(s) 47
Bsc4I CCNNNNNNNGG 1 cut(s) 320
Bse1I ACTGG 1 cut(s) 309
BseGI GGATG 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 320
BseNI ACTGG 1 cut(s) 309
BseXI GCAGC 1 cut(s) 46
BslI CCNNNNNNNGG 1 cut(s) 320
Bsp1407I TGTACA 1 cut(s) 132
Bsp143I GATC 2 cut(s) 158, 343
BspLI GGNNCC 1 cut(s) 160
BspPI GGATC 2 cut(s) 153, 166
BsrGI TGTACA 1 cut(s) 132
BsrI ACTGG 1 cut(s) 309
BssMI GATC 2 cut(s) 158, 343
Bst4CI ACNGT 1 cut(s) 188
Bst6I CTCTTC 1 cut(s) 121
BstAUI TGTACA 1 cut(s) 132
BstF5I GGATG 1 cut(s) 27
BstKTI GATC 2 cut(s) 161, 346
BstMBI GATC 2 cut(s) 158, 343
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 46
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BtgZI GCGATG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 27
Csp6I GTAC 2 cut(s) 133, 217
CviQI GTAC 2 cut(s) 133, 217
DpnI GATC 2 cut(s) 160, 345
DpnII GATC 2 cut(s) 158, 343
DraIII CACNNNGTG 1 cut(s) 155
Eam1104I CTCTTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 121
EcoT22I ATGCAT 1 cut(s) 6
FaiI YATR 7 cut(s) 6, 21, 146, 207, 222, 317, 321
FalI AAGNNNNNCTT 2 cut(s) 7, 39
FbaI TGATCA 1 cut(s) 343
Fnu4HI GCNGC 1 cut(s) 35
FokI GGATG 1 cut(s) 14
Fsp4HI GCNGC 1 cut(s) 35
GluI GCNGC 1 cut(s) 35
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 3 cut(s) 86, 133, 331
Hpy188I TCNGA 1 cut(s) 203
Hpy188III TCNNGA 1 cut(s) 123
Hpy8I GTNNAC 3 cut(s) 86, 133, 331
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 2 cut(s) 158, 343
LpnPI CCDG 3 cut(s) 44, 136, 322
Lsp1109I GCAGC 1 cut(s) 46
MalI GATC 2 cut(s) 160, 345
MboI GATC 2 cut(s) 158, 343
MboII GAAGA 2 cut(s) 114, 138
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 1 cut(s) 158
MluCI AATT 4 cut(s) 7, 53, 211, 339
MnlI CCTC 3 cut(s) 73, 106, 175
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 165
MunI CAATTG 1 cut(s) 339
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 2 cut(s) 158, 343
NlaIV GGNNCC 1 cut(s) 160
NmeAIII GCCGAG 1 cut(s) 69
NsiI ATGCAT 1 cut(s) 6
PkrI GCNGC 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 160
PsuI RGATCY 1 cut(s) 158
RsaI GTAC 2 cut(s) 134, 218
RsaNI GTAC 2 cut(s) 133, 217
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 2 cut(s) 158, 343
SetI ASST 1 cut(s) 117
SgeI CNNG 8 cut(s) 43, 50, 76, 82, 101, 135, 285, 321
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 4 cut(s) 7, 53, 211, 339
TaaI ACNGT 1 cut(s) 188
TaqI TCGA 2 cut(s) 272, 291
TasI AATT 4 cut(s) 7, 53, 211, 339
TatI WGTACW 2 cut(s) 132, 216
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TseI GCWGC 1 cut(s) 34
TspGWI ACGGA 1 cut(s) 92
XapI RAATTY 2 cut(s) 53, 211
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.