pycom15g36640

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
36609987 .. 36612101
2115 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1908 bp
ATGTCTTTCAGTTATGATGACGTAATAATAATAAAAATCAGGAAAATGGGTAATCCGTTCGTGAGAAGCGGATTGAGCTTCTCCGTTCCAACCAGCATTCTTCCGCCACTTAACCCCCTGCACGAAACACTCCTCACTAGGATTCCGATTGGATTTCCGAAGCACCGCCGGACGCTTCCGCCGCACTCATCCTCCTCCTCAAACTTTGCCATCATTTCCACAACCGAGTCGTGGGATGGCAGCCTTCTCTTCCGCTTTGGGGACGAGAGGGAGAAATCTGTTACCACTGAAACAGAAACTGATGCTCAAAGTCATCTGGAGGATCCCGTGCAAGATTCAGAATTGAGCCAAACATTGTTGGGAAAAAGAGGGAGTGGTGGTGGCAGTGGTGCTGCCGCTGAGGCCGATGAGACTGTTGATGCGGTTTCAGAGACGAGCACCGACAATGCTACTGGCTGCGGTGGCGAAGAAACCACAACCACAAGGTCCATAACCACAACCACAACCACAGAAGATGAAACTCAACTCAGCAATGAAATTCATGCTTTTCCAGCGATTGGCACCGCCGCCGCCGAGGCCAAGGAGAATGCTGTTGATGTGGTTTCAGTGACAAGCACCGGCAGTGCGACTGGCCGCGGTGATGGTGGTGAAAAACCCACAATTACAACCACAACCACAACAACCACCACAGCGGATGGAACTGAAATCAGCAGTGAAATTCCTGCTTTTCCATCAATTGGCAGCGCCGAGGCCGAGGAGAATGCTGTTGATGCGGTTTCGTTGACGAGCACGGGCATTGCGACTGGTGGCGTTAGTGGTGGTGGTGAAGAAACCACAACCAGAACAAATGAAACTCAAGGCAGCAAAGAAATTCATGCTTTTCCAGCAATTGGCACAGCCGCTGCTGAGGCCAAGGAGAATGTTGTTGACGCGGTTTCAGTGACGAGCACCAACAATTGGACTGGTGGTGGTGAAGAAACCACAACTACAACCACAATTACAACCACAATCATAACAGATGAAACTCAAGTCAGCAATGAAATTCATGCTTTTCCAGCAATTGGCGGTGCCAAGGCCGAGGAGAATGCTGTTGATGGGGTTTCAGTGACGAGTATCGACATTGTCACTGGTGGCGGTAGTGGTGGTGGTGAAGAAACCACAACCACAACTACAAGAACAACCACAACAGTTGAAAGTCAAGTCAGCAATGACATTCATGCTGAGGGCGAGGAGACTGCTGCTGATGCGGTTTCGTTGACGAGCACCAGCATTTCGACTGGTGGCGAAGAAACGACACCTACAACCACAAGGTCCACAACTGACGAAACACAAGTCAGCAATGAAATTCATGCTTTTCCAGCAAATGGCAGTGGCGAGACGGAGGAGAATGCTGTTGATGCGATTTCAGTGACGAGCACCAGCACTACGACTGGTGACGGTAGTGGTGGTGGTGAAGAAACCACAACCACAACTACAACCAGAACCACAACAGATGAAACTCAAGTCAGCAATGAAATTGATGCTTTTCCAGTAATTAGCAGCGCCGAGGCCGAGGAGAATGCTGTCGATGTGTTTTCAGTGACGAGCACCAGCACTGCGACTGGTGACGGTAGTGGTGGTGGTGAAGAAACCACAACCACAACTACAACCAGAACCACAACAGATGAAACTCAAGTCAGCAATGAAATTCATGCTTTTCCAGCAATTAGCGGCGCTGAGGCCGAGGAGAATGCTGTTGATGCGGTTTTAGTGACGAGCACCGACATTGCGACTGGAGGTGGTAGCGGTGGTGGCAAAGAAACCACAACCACAGCTACAACCACAACCACAACAGATGAAACTCAAGTCAGCAATGACATTCATGCTCATGCTGAGGCTGAGGAGAATCTGTTGATGCGGTTTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C SpoIIE

Protein Analysis

636

Amino Acids

64.87

Weight (kDa)

4.11

Isoelectric Point (pI)

33.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 560, 1067
AccB7I CCANNNNNTGG 6 cut(s) 557, 737, 890, 957, 1061, 1364
AccII CGCG 2 cut(s) 636, 932
AclWI GGATC 2 cut(s) 317, 330
AcoI YGGCCR 1 cut(s) 631
AcsI RAATTY 6 cut(s) 537, 717, 870, 1041, 1344, 1686
AfiI CCNNNNNNNGG 8 cut(s) 231, 259, 557, 737, 890, 957, 1061, 1364
AgsI TTSAA 1 cut(s) 1193
AluBI AGCT 2 cut(s) 78, 1814
AluI AGCT 2 cut(s) 78, 1814
Alw21I GWGCWC 7 cut(s) 440, 791, 950, 1265, 1418, 1589, 1760
Alw26I GTCTC 4 cut(s) 404, 425, 1226, 1370
AlwI GGATC 2 cut(s) 317, 330
AlwNI CAGNNNCTG 2 cut(s) 299, 902
AoxI GGCC 8 cut(s) 402, 576, 631, 750, 909, 1074, 1548, 1719
ApeKI GCWGC 8 cut(s) 240, 392, 456, 741, 861, 902, 1238, 1539
ApoI RAATTY 6 cut(s) 537, 717, 870, 1041, 1344, 1686
ArsI GACNNNNNNTTYG 2 cut(s) 1317, 1349
AspLEI GCGC 3 cut(s) 746, 1544, 1715
AspS9I GGNCC 2 cut(s) 486, 1311
AsuHPI GGTGA 9 cut(s) 650, 659, 836, 983, 1160, 1445, 1463, 1616, 1634
AvaII GGWCC 2 cut(s) 486, 1311
BamHI GGATCC 1 cut(s) 322
BanI GGYRCC 2 cut(s) 560, 1067
Bbv12I GWGCWC 7 cut(s) 440, 791, 950, 1265, 1418, 1589, 1760
BbvCI CCTCAGC 6 cut(s) 399, 906, 1221, 1716, 1872, 1878
BbvI GCAGC 8 cut(s) 252, 379, 443, 753, 873, 889, 1225, 1551
BccI CCATC 6 cut(s) 218, 230, 635, 689, 739, 1088
BcoDI GTCTC 4 cut(s) 404, 425, 1226, 1370
BfaI CTAG 1 cut(s) 138
BfoI RGCGCY 3 cut(s) 747, 1545, 1716
BglI GCCNNNNNGGC 2 cut(s) 401, 575
Bme18I GGWCC 2 cut(s) 486, 1311
BmgT120I GGNCC 2 cut(s) 486, 1311
BmiI GGNNCC 3 cut(s) 324, 562, 1069
BmsI GCATC 8 cut(s) 292, 409, 760, 1234, 1387, 1510, 1729, 1884
BpmI CTGGAG 2 cut(s) 338, 1794
Bpu10I CCTNAGC 6 cut(s) 399, 906, 1221, 1716, 1872, 1878
BpuEI CTTGAG 5 cut(s) 840, 1011, 1485, 1656, 1827
BsaXI ACNNNNNCTCC 6 cut(s) 176, 206, 364, 394, 1874, 1904
Bsc4I CCNNNNNNNGG 8 cut(s) 231, 259, 557, 737, 890, 957, 1061, 1364
Bse118I RCCGGY 1 cut(s) 617
Bse3DI GCAATG 9 cut(s) 538, 795, 1042, 1213, 1345, 1516, 1687, 1764, 1858
BseGI GGATG 3 cut(s) 188, 241, 700
BseLI CCNNNNNNNGG 8 cut(s) 231, 259, 557, 737, 890, 957, 1061, 1364
BseMI GCAATG 9 cut(s) 538, 795, 1042, 1213, 1345, 1516, 1687, 1764, 1858
BseMII CTCAG 7 cut(s) 390, 541, 897, 1212, 1707, 1863, 1869
BseXI GCAGC 8 cut(s) 252, 379, 443, 753, 873, 889, 1225, 1551
BsgI GTGCAG 1 cut(s) 104
Bsh1236I CGCG 2 cut(s) 636, 932
BshFI GGCC 8 cut(s) 404, 578, 633, 752, 911, 1076, 1550, 1721
BshNI GGYRCC 2 cut(s) 560, 1067
BsiHKAI GWGCWC 7 cut(s) 440, 791, 950, 1265, 1418, 1589, 1760
BsiSI CCGG 2 cut(s) 169, 618
BslFI GGGAC 1 cut(s) 275
BslI CCNNNNNNNGG 8 cut(s) 231, 259, 557, 737, 890, 957, 1061, 1364
BsmAI GTCTC 4 cut(s) 404, 425, 1226, 1370
BsmBI CGTCTC 2 cut(s) 425, 1370
BsmFI GGGAC 1 cut(s) 275
BsmI GAATGC 7 cut(s) 96, 592, 766, 1090, 1393, 1564, 1735
BsnI GGCC 8 cut(s) 404, 578, 633, 752, 911, 1076, 1550, 1721
Bsp1286I GDGCHC 7 cut(s) 440, 791, 950, 1265, 1418, 1589, 1760
Bsp143I GATC 1 cut(s) 322
BspANI GGCC 8 cut(s) 404, 578, 633, 752, 911, 1076, 1550, 1721
BspCNI CTCAG 7 cut(s) 391, 540, 898, 1213, 1708, 1864, 1870
BspFNI CGCG 2 cut(s) 636, 932
BspLI GGNNCC 3 cut(s) 324, 562, 1069
BspPI GGATC 2 cut(s) 317, 330
BspT107I GGYRCC 2 cut(s) 560, 1067
BsrDI GCAATG 9 cut(s) 538, 795, 1042, 1213, 1345, 1516, 1687, 1764, 1858
BsrFI RCCGGY 1 cut(s) 617
BssAI RCCGGY 1 cut(s) 617
BssMI GATC 1 cut(s) 322
BssT1I CCWWGG 3 cut(s) 579, 912, 1071
Bst4CI ACNGT 4 cut(s) 415, 1189, 1439, 1610
Bst6I CTCTTC 1 cut(s) 254
BstDEI CTNAG 7 cut(s) 399, 527, 906, 1221, 1716, 1872, 1878
BstDSI CCRYGG 1 cut(s) 634
BstF5I GGATG 3 cut(s) 188, 241, 700
BstFNI CGCG 2 cut(s) 636, 932
BstH2I RGCGCY 3 cut(s) 747, 1545, 1716
BstHHI GCGC 3 cut(s) 746, 1544, 1715
BstKTI GATC 1 cut(s) 325
BstMAI GTCTC 4 cut(s) 404, 425, 1226, 1370
BstMBI GATC 1 cut(s) 322
BstUI CGCG 2 cut(s) 636, 932
BstV1I GCAGC 8 cut(s) 252, 379, 443, 753, 873, 889, 1225, 1551
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BsuRI GGCC 8 cut(s) 404, 578, 633, 752, 911, 1076, 1550, 1721
BtgI CCRYGG 1 cut(s) 634
BtsCI GGATG 3 cut(s) 188, 241, 700
BtsI GCAGTG 5 cut(s) 391, 628, 718, 1375, 1593
CaiI CAGNNNCTG 2 cut(s) 299, 902
CfoI GCGC 3 cut(s) 746, 1544, 1715
Cfr10I RCCGGY 1 cut(s) 617
Cfr13I GGNCC 2 cut(s) 486, 1311
Cfr42I CCGCGG 1 cut(s) 637
CseI GACGC 2 cut(s) 181, 938
CspCI CAANNNNNGTGG 2 cut(s) 1171, 1206
CviAII CATG 8 cut(s) 542, 875, 1046, 1217, 1349, 1691, 1862, 1868
DdeI CTNAG 7 cut(s) 399, 527, 906, 1221, 1716, 1872, 1878
DpnI GATC 1 cut(s) 324
DpnII GATC 1 cut(s) 322
EaeI YGGCCR 1 cut(s) 631
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
EciI GGCGGA 2 cut(s) 93, 168
Eco130I CCWWGG 3 cut(s) 579, 912, 1071
Eco47I GGWCC 2 cut(s) 486, 1311
EcoT14I CCWWGG 3 cut(s) 579, 912, 1071
ErhI CCWWGG 3 cut(s) 579, 912, 1071
Esp3I CGTCTC 2 cut(s) 425, 1370
FaeI CATG 8 cut(s) 545, 878, 1049, 1220, 1352, 1694, 1865, 1871
FaqI GGGAC 1 cut(s) 275
FatI CATG 8 cut(s) 541, 874, 1045, 1216, 1348, 1690, 1861, 1867
FokI GGATG 3 cut(s) 175, 248, 707
FspBI CTAG 1 cut(s) 138
GlaI GCGC 3 cut(s) 745, 1543, 1714
GsuI CTGGAG 2 cut(s) 338, 1794
HaeII RGCGCY 3 cut(s) 747, 1545, 1716
HaeIII GGCC 8 cut(s) 404, 578, 633, 752, 911, 1076, 1550, 1721
HapII CCGG 2 cut(s) 169, 618
HgaI GACGC 2 cut(s) 181, 938
HhaI GCGC 3 cut(s) 746, 1544, 1715
Hin1II CATG 8 cut(s) 545, 878, 1049, 1220, 1352, 1694, 1865, 1871
Hin6I GCGC 3 cut(s) 744, 1542, 1713
HinP1I GCGC 3 cut(s) 744, 1542, 1713
HincII GTYRAC 3 cut(s) 783, 928, 1257
HindII GTYRAC 3 cut(s) 783, 928, 1257
HinfI GANTC 4 cut(s) 142, 227, 335, 1885
HpaII CCGG 2 cut(s) 169, 618
HphI GGTGA 9 cut(s) 650, 659, 836, 983, 1160, 1445, 1463, 1616, 1634
Hpy166II GTNNAC 4 cut(s) 783, 928, 1257, 1314
Hpy188I TCNGA 4 cut(s) 147, 159, 340, 430
Hpy188III TCNNGA 3 cut(s) 40, 61, 317
Hpy8I GTNNAC 4 cut(s) 783, 928, 1257, 1314
HpyAV CCTTC 1 cut(s) 254
HpyCH4III ACNGT 4 cut(s) 415, 1189, 1439, 1610
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 2 cut(s) 121, 331
HpyF3I CTNAG 7 cut(s) 399, 527, 906, 1221, 1716, 1872, 1878
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 8 cut(s) 545, 878, 1049, 1220, 1352, 1694, 1865, 1871
HspAI GCGC 3 cut(s) 744, 1542, 1713
KspI CCGCGG 1 cut(s) 637
Kzo9I GATC 1 cut(s) 322
Lsp1109I GCAGC 8 cut(s) 252, 379, 443, 753, 873, 889, 1225, 1551
LweI GCATC 8 cut(s) 292, 409, 760, 1234, 1387, 1510, 1729, 1884
MaeI CTAG 1 cut(s) 138
MaeII ACGT 1 cut(s) 21
MalI GATC 1 cut(s) 324
MboI GATC 1 cut(s) 322
MfeI CAATTG 4 cut(s) 735, 888, 955, 1059
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 7 cut(s) 440, 791, 950, 1265, 1418, 1589, 1760
MlyI GAGTC 1 cut(s) 236
MmeI TCCRAC 1 cut(s) 113
MseI TTAA 1 cut(s) 111
MslI CAYNNNNRTG 1 cut(s) 1866
MspA1I CMGCKG 4 cut(s) 398, 636, 692, 902
MspI CCGG 2 cut(s) 169, 618
MunI CAATTG 4 cut(s) 735, 888, 955, 1059
Mva1269I GAATGC 7 cut(s) 96, 592, 766, 1090, 1393, 1564, 1735
MvnI CGCG 2 cut(s) 636, 932
NdeII GATC 1 cut(s) 322
NlaIII CATG 8 cut(s) 545, 878, 1049, 1220, 1352, 1694, 1865, 1871
NlaIV GGNNCC 3 cut(s) 324, 562, 1069
NmeAIII GCCGAG 7 cut(s) 598, 772, 778, 1102, 1570, 1576, 1747
NmuCI GTSAC 9 cut(s) 607, 940, 1105, 1123, 1408, 1433, 1579, 1604, 1750
PcsI WCGNNNNNNNCGW 1 cut(s) 797
PctI GAATGC 7 cut(s) 96, 592, 766, 1090, 1393, 1564, 1735
PfeI GAWTC 3 cut(s) 142, 335, 1885
PflFI GACNNNGTC 1 cut(s) 1121
PflMI CCANNNNNTGG 6 cut(s) 557, 737, 890, 957, 1061, 1364
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PspN4I GGNNCC 3 cut(s) 324, 562, 1069
PspPI GGNCC 2 cut(s) 486, 1311
PstNI CAGNNNCTG 2 cut(s) 299, 902
PsuI RGATCY 1 cut(s) 322
PsyI GACNNNGTC 1 cut(s) 1121
RseI CAYNNNNRTG 1 cut(s) 1866
SacII CCGCGG 1 cut(s) 637
SaqAI TTAA 1 cut(s) 111
Sau3AI GATC 1 cut(s) 322
Sau96I GGNCC 2 cut(s) 486, 1311
SchI GAGTC 1 cut(s) 236
SduI GDGCHC 7 cut(s) 440, 791, 950, 1265, 1418, 1589, 1760
SetI ASST 7 cut(s) 24, 80, 488, 1300, 1313, 1780, 1816
SfaNI GCATC 8 cut(s) 292, 409, 760, 1234, 1387, 1510, 1729, 1884
Sfr303I CCGCGG 1 cut(s) 637
SgrBI CCGCGG 1 cut(s) 637
SinI GGWCC 2 cut(s) 486, 1311
SmiMI CAYNNNNRTG 1 cut(s) 1866
SmlI CTYRAG 5 cut(s) 855, 1026, 1500, 1671, 1842
SmoI CTYRAG 5 cut(s) 855, 1026, 1500, 1671, 1842
SspMI CTAG 1 cut(s) 138
StyI CCWWGG 3 cut(s) 579, 912, 1071
TaaI ACNGT 4 cut(s) 415, 1189, 1439, 1610
TaiI ACGT 1 cut(s) 24
TaqI TCGA 3 cut(s) 1116, 1274, 1566
TauI GCSGC 7 cut(s) 184, 398, 569, 572, 636, 902, 1713
TfiI GAWTC 3 cut(s) 142, 335, 1885
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TseFI GTSAC 9 cut(s) 607, 940, 1105, 1123, 1408, 1433, 1579, 1604, 1750
TseI GCWGC 8 cut(s) 240, 392, 456, 741, 861, 902, 1238, 1539
Tsp45I GTSAC 9 cut(s) 607, 940, 1105, 1123, 1408, 1433, 1579, 1604, 1750
TspGWI ACGGA 3 cut(s) 45, 73, 1394
Tth111I GACNNNGTC 1 cut(s) 1121
Van91I CCANNNNNTGG 6 cut(s) 557, 737, 890, 957, 1061, 1364
VpaK11BI GGWCC 2 cut(s) 486, 1311
XapI RAATTY 6 cut(s) 537, 717, 870, 1041, 1344, 1686
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.