Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

37036352 .. 37037111

Gene Structure 760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTTTTTGAAAATAAGCTGGTTTTTGGAAACTGCTATTTGCAGCTTCAGAGTTTACCAAATAGCAAAAACCCTCCCAACTTTTTTTCATACTAACTTTTTTTTTATTTTTTTTTTATTTTTTATTTTTTTAAATCTCAATGCCAAACCAGGGCTGTATCTGATCATTTTGTATTTGAGTGCAACTTCACTTTGCCTTGAGCTGTCTCAATTTCTGTGGGCTTTGTCTCAATTTCCTTTGGCTTTGTCTCACTTTATGGCAATTCTCATCTCAAATCCGAAATTCATGCTTTCTTCCACTCCAATAGTTGTTCCTAGCCGCGAATTGTCCACCAGCCTCGGCCACTCGACTCATCTTGTGTTTCCTCCATGGATCTCATTTGGATACATGCTTTGGGTTTGGGTGGCTCTCAAAGTGTATTTAGCACTACTTAGTAAGATTATGGGAGCACTCATAGCGCGGGTGGTTTTCCACCCCTATTCTCCATTTCATCCAGTTGGTTTGTTGGGTCTTCTTCTAGATGGCGGCGGCTTCACGATGGTGGTGTGGCTACTTGGGTGGTGGCAGCTGGTCCCTCTTTTCAGATCGAGGGTTTTATGTTTTAGGGTGTTATGGGTTTTACTGTTGGGCTTTTCCCCTTGTATTTTATTTGGTTGTATTCTTGCTTGCTTGGTTGTTTTTGTTTGGTGGACTTTTCTAGCCTTGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031425 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901259 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

237

Amino Acids

27.17

Weight (kDa)

9.41

Isoelectric Point (pI)

32.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	321, 460
AciI	CCGC	4 cut(s)	319, 460, 525, 528
AclWI	GGATC	1 cut(s)	380
AcoI	YGGCCR	1 cut(s)	340
AcsI	RAATTY	1 cut(s)	281
AcuI	CTGAAG	1 cut(s)	31
AfiI	CCNNNNNNNGG	1 cut(s)	150
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	148
AleI	CACNNNNGTG	1 cut(s)	539
AluBI	AGCT	4 cut(s)	18, 45, 202, 568
AluI	AGCT	4 cut(s)	18, 45, 202, 568
Alw21I	GWGCWC	1 cut(s)	451
Alw26I	GTCTC	3 cut(s)	210, 231, 252
AlwI	GGATC	1 cut(s)	380
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	2 cut(s)	42, 565
ApoI	RAATTY	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	460
AspS9I	GGNCC	1 cut(s)	571
AvaII	GGWCC	1 cut(s)	571
BbsI	GAAGAC	1 cut(s)	503
Bbv12I	GWGCWC	1 cut(s)	451
BbvI	GCAGC	2 cut(s)	54, 577
BccI	CCATC	2 cut(s)	515, 532
BcgI	CGANNNNNNTGC	2 cut(s)	268, 302
BciT130I	CCWGG	1 cut(s)	150
BciVI	GTATCC	1 cut(s)	377
BclI	TGATCA	1 cut(s)	162
BcoDI	GTCTC	3 cut(s)	210, 231, 252
BfaI	CTAG	3 cut(s)	315, 518, 698
BfuI	GTATCC	1 cut(s)	377
BisI	GCNGC	5 cut(s)	43, 319, 526, 529, 566
BlsI	GCNGC	5 cut(s)	44, 320, 527, 530, 567
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	1 cut(s)	571
BmgT120I	GGNCC	1 cut(s)	571
BmiI	GGNNCC	1 cut(s)	573
BmrFI	CCNGG	1 cut(s)	150
BpiI	GAAGAC	1 cut(s)	503
BpuEI	CTTGAG	1 cut(s)	218
BsaJI	CCNNGG	3 cut(s)	149, 337, 368
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	494
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	3 cut(s)	149, 337, 368
BseGI	GGATG	1 cut(s)	490
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	494
BseXI	GCAGC	2 cut(s)	54, 577
Bsh1236I	CGCG	2 cut(s)	321, 460
BshFI	GGCC	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	451
BslFI	GGGAC	1 cut(s)	557
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmAI	GTCTC	3 cut(s)	210, 231, 252
BsmFI	GGGAC	1 cut(s)	557
BsnI	GGCC	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	451
Bsp143I	GATC	3 cut(s)	162, 372, 584
Bsp19I	CCATGG	1 cut(s)	368
BspACI	CCGC	4 cut(s)	319, 460, 525, 528
BspANI	GGCC	1 cut(s)	342
BspFNI	CGCG	2 cut(s)	321, 460
BspLI	GGNNCC	1 cut(s)	573
BspPI	GGATC	1 cut(s)	380
BsrI	ACTGG	1 cut(s)	494
BssECI	CCNNGG	3 cut(s)	149, 337, 368
BssMI	GATC	3 cut(s)	162, 372, 584
BssT1I	CCWWGG	1 cut(s)	368
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	624
BstC8I	GCNNGC	1 cut(s)	667
BstDEI	CTNAG	1 cut(s)	431
BstDSI	CCRYGG	1 cut(s)	368
BstF5I	GGATG	1 cut(s)	490
BstFNI	CGCG	2 cut(s)	321, 460
BstHHI	GCGC	1 cut(s)	460
BstKTI	GATC	3 cut(s)	165, 375, 587
BstMAI	GTCTC	3 cut(s)	210, 231, 252
BstMBI	GATC	3 cut(s)	162, 372, 584
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstNI	CCWGG	1 cut(s)	150
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	1 cut(s)	148
BstUI	CGCG	2 cut(s)	321, 460
BstV1I	GCAGC	2 cut(s)	54, 577
BstV2I	GAAGAC	1 cut(s)	503
BstX2I	RGATCY	1 cut(s)	372
BstYI	RGATCY	1 cut(s)	372
BsuI	GTATCC	1 cut(s)	377
BsuRI	GGCC	1 cut(s)	342
BtgI	CCRYGG	1 cut(s)	368
BtsCI	GGATG	1 cut(s)	490
Cac8I	GCNNGC	1 cut(s)	667
CfoI	GCGC	1 cut(s)	460
Cfr13I	GGNCC	1 cut(s)	571
CspCI	CAANNNNNGTGG	2 cut(s)	197, 232
CviAII	CATG	3 cut(s)	286, 369, 388
DdeI	CTNAG	1 cut(s)	431
DpnI	GATC	3 cut(s)	164, 374, 586
DpnII	GATC	3 cut(s)	162, 372, 584
DraI	TTTAAA	1 cut(s)	132
EaeI	YGGCCR	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	368
Eco47I	GGWCC	1 cut(s)	571
Eco57I	CTGAAG	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	368
ErhI	CCWWGG	1 cut(s)	368
FaeI	CATG	3 cut(s)	289, 372, 391
FaiI	YATR	9 cut(s)	90, 257, 287, 370, 389, 443, 455, 598, 613
FaqI	GGGAC	1 cut(s)	557
FatI	CATG	3 cut(s)	285, 368, 387
FauI	CCCGC	1 cut(s)	453
FbaI	TGATCA	1 cut(s)	162
Fnu4HI	GCNGC	5 cut(s)	43, 319, 526, 529, 566
FokI	GGATG	1 cut(s)	477
Fsp4HI	GCNGC	5 cut(s)	43, 319, 526, 529, 566
FspBI	CTAG	3 cut(s)	315, 518, 698
GlaI	GCGC	1 cut(s)	459
GluI	GCNGC	5 cut(s)	43, 319, 526, 529, 566
HaeIII	GGCC	1 cut(s)	342
HhaI	GCGC	1 cut(s)	460
Hin1II	CATG	3 cut(s)	289, 372, 391
Hin6I	GCGC	1 cut(s)	458
HinP1I	GCGC	1 cut(s)	458
HinfI	GANTC	1 cut(s)	349
Hpy166II	GTNNAC	3 cut(s)	55, 330, 690
Hpy188I	TCNGA	4 cut(s)	50, 162, 279, 584
Hpy188III	TCNNGA	2 cut(s)	518, 535
Hpy8I	GTNNAC	3 cut(s)	55, 330, 690
HpyCH4III	ACNGT	1 cut(s)	624
HpyCH4V	TGCA	2 cut(s)	42, 182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpyF3I	CTNAG	1 cut(s)	431
Hsp92II	CATG	3 cut(s)	289, 372, 391
HspAI	GCGC	1 cut(s)	458
Ksp22I	TGATCA	1 cut(s)	162
Kzo9I	GATC	3 cut(s)	162, 372, 584
LmnI	GCTCC	1 cut(s)	446
LpnPI	CCDG	6 cut(s)	4, 135, 162, 346, 507, 554
Lsp1109I	GCAGC	2 cut(s)	54, 577
MaeI	CTAG	3 cut(s)	315, 518, 698
MalI	GATC	3 cut(s)	164, 374, 586
MboI	GATC	3 cut(s)	162, 372, 584
MboII	GAAGA	3 cut(s)	285, 503, 506
MflI	RGATCY	1 cut(s)	372
MhlI	GDGCHC	1 cut(s)	451
MluCI	AATT	5 cut(s)	209, 230, 261, 281, 323
MlyI	GAGTC	1 cut(s)	343
MnlI	CCTC	5 cut(s)	83, 347, 375, 582, 585
MseI	TTAA	1 cut(s)	131
MslI	CAYNNNNRTG	1 cut(s)	539
MspA1I	CMGCKG	1 cut(s)	568
MspR9I	CCNGG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	150
MvnI	CGCG	2 cut(s)	321, 460
MwoI	GCNNNNNNNGC	1 cut(s)	455
NcoI	CCATGG	1 cut(s)	368
NdeII	GATC	3 cut(s)	162, 372, 584
NlaIII	CATG	3 cut(s)	289, 372, 391
NlaIV	GGNNCC	1 cut(s)	573
NmeAIII	GCCGAG	1 cut(s)	318
NspI	RCATGY	1 cut(s)	391
OliI	CACNNNNGTG	1 cut(s)	539
PkrI	GCNGC	5 cut(s)	44, 320, 527, 530, 567
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	573
PspPI	GGNCC	1 cut(s)	571
PsuI	RGATCY	1 cut(s)	372
PvuII	CAGCTG	1 cut(s)	568
RseI	CAYNNNNRTG	1 cut(s)	539
SaqAI	TTAA	1 cut(s)	131
SatI	GCNGC	5 cut(s)	43, 319, 526, 529, 566
Sau3AI	GATC	3 cut(s)	162, 372, 584
Sau96I	GGNCC	1 cut(s)	571
SchI	GAGTC	1 cut(s)	343
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	1 cut(s)	451
SetI	ASST	4 cut(s)	20, 47, 204, 570
SinI	GGWCC	1 cut(s)	571
SmiMI	CAYNNNNRTG	1 cut(s)	539
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	5 cut(s)	209, 230, 261, 281, 323
SsiI	CCGC	4 cut(s)	319, 460, 525, 528
SspMI	CTAG	3 cut(s)	315, 518, 698
StyD4I	CCNGG	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	368
TaaI	ACNGT	1 cut(s)	624
TaqI	TCGA	2 cut(s)	347, 587
TasI	AATT	5 cut(s)	209, 230, 261, 281, 323
TauI	GCSGC	3 cut(s)	321, 528, 531
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TseI	GCWGC	2 cut(s)	42, 565
TspDTI	ATGAA	3 cut(s)	77, 274, 479
VpaK11BI	GGWCC	1 cut(s)	571
XapI	RAATTY	1 cut(s)	281
XbaI	TCTAGA	1 cut(s)	517
XceI	RCATGY	1 cut(s)	391
XspI	CTAG	3 cut(s)	315, 518, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.