pycom15g37470

Transmembrane emp24 domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Reverse (-)
37416240 .. 37416538
299 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 210 bp
ATGGCCGTCATCCTGTATCAACGCTTTCTCAAGGCGAGAGAAGCGGAAAGGAGGAATTTGAGCGAACGAACTAACTCGAGGGTGACACGGTATAGCATGATGTCGTTGGGCCTCTGCGTTGGAGTTTCATGTCTGCAGTTATGGCACTTGAAGAGATTTTTCCGAAAGAAGAAGATTATTCGAATTGCTCAACTCCGATCATCTTTGTAG

Protein Analysis

70

Amino Acids

8.26

Weight (kDa)

11.61

Isoelectric Point (pI)

61.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMP24_GP25L PF01105 3 - 55 4.2e-16 emp24/gp25L/p24 family/GOLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 44
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 55
AgsI TTSAA 1 cut(s) 151
Ama87I CYCGRG 1 cut(s) 76
AoxI GGCC 2 cut(s) 3, 109
ApoI RAATTY 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 109
AsuHPI GGTGA 1 cut(s) 94
AsuII TTCGAA 1 cut(s) 181
AvaI CYCGRG 1 cut(s) 76
BfmI CTRYAG 1 cut(s) 134
BmeT110I CYCGRG 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 109
Bpu14I TTCGAA 1 cut(s) 181
BpuEI CTTGAG 1 cut(s) 14
BseGI GGATG 1 cut(s) 9
BshFI GGCC 2 cut(s) 5, 111
BsiHKCI CYCGRG 1 cut(s) 76
BsnI GGCC 2 cut(s) 5, 111
BsoBI CYCGRG 1 cut(s) 76
Bsp119I TTCGAA 1 cut(s) 181
Bsp143I GATC 1 cut(s) 197
BspACI CCGC 1 cut(s) 44
BspANI GGCC 2 cut(s) 5, 111
BspMAI CTGCAG 1 cut(s) 138
BspT104I TTCGAA 1 cut(s) 181
BssMI GATC 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 146
BstBI TTCGAA 1 cut(s) 181
BstF5I GGATG 1 cut(s) 9
BstKTI GATC 1 cut(s) 200
BstMBI GATC 1 cut(s) 197
BstMWI GCNNNNNNNGC 2 cut(s) 41, 142
BstSFI CTRYAG 1 cut(s) 134
BsuRI GGCC 2 cut(s) 5, 111
BtsCI GGATG 1 cut(s) 9
Cfr13I GGNCC 1 cut(s) 109
CviAII CATG 2 cut(s) 97, 129
CviJI RGCY 2 cut(s) 5, 111
CviKI_1 RGCY 2 cut(s) 5, 111
DpnI GATC 1 cut(s) 199
DpnII GATC 1 cut(s) 197
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Eco88I CYCGRG 1 cut(s) 76
FaeI CATG 2 cut(s) 100, 132
FaiI YATR 4 cut(s) 93, 98, 130, 142
FatI CATG 2 cut(s) 96, 128
HaeIII GGCC 2 cut(s) 5, 111
Hin1II CATG 2 cut(s) 100, 132
HphI GGTGA 1 cut(s) 94
Hpy188I TCNGA 2 cut(s) 164, 197
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4V TGCA 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 142
Hsp92II CATG 2 cut(s) 100, 132
Kzo9I GATC 1 cut(s) 197
LpnPI CCDG 1 cut(s) 26
MaeIII GTNAC 1 cut(s) 82
MalI GATC 1 cut(s) 199
MboI GATC 1 cut(s) 197
MboII GAAGA 3 cut(s) 163, 181, 184
MluCI AATT 2 cut(s) 55, 183
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 3 cut(s) 45, 72, 122
MwoI GCNNNNNNNGC 2 cut(s) 41, 142
NdeII GATC 1 cut(s) 197
NlaIII CATG 2 cut(s) 100, 132
NmuCI GTSAC 1 cut(s) 82
NspV TTCGAA 1 cut(s) 181
PaeR7I CTCGAG 1 cut(s) 76
PspPI GGNCC 1 cut(s) 109
PspXI VCTCGAGB 1 cut(s) 76
PstI CTGCAG 1 cut(s) 138
Sau3AI GATC 1 cut(s) 197
Sau96I GGNCC 1 cut(s) 109
SfcI CTRYAG 1 cut(s) 134
Sfr274I CTCGAG 1 cut(s) 76
SfuI TTCGAA 1 cut(s) 181
SgeI CNNG 9 cut(s) 25, 43, 48, 88, 90, 99, 109, 141, 160
SlaI CTCGAG 1 cut(s) 76
SmlI CTYRAG 2 cut(s) 29, 76
SmoI CTYRAG 2 cut(s) 29, 76
Sse9I AATT 2 cut(s) 55, 183
SsiI CCGC 1 cut(s) 44
TaaI ACNGT 1 cut(s) 90
TaqI TCGA 2 cut(s) 77, 181
TasI AATT 2 cut(s) 55, 183
TseFI GTSAC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 117
XapI RAATTY 1 cut(s) 55
XhoI CTCGAG 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.