pycom15g37520

Ribosome biogenesis protein SLX9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Reverse (-)
37459145 .. 37459864
720 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 465 bp
ATGACAAACCCAAAACCCCTGCGCACCAACACCTCCAAAATACAACCCCGCCGCACCACTGACACCCCAAAAATTCCAACCCAGCCCCGCCGCAACAACACCCAGGGTCCCACTCCGGTCGCCAACCATCGCACCACCACCAACACCCGAAACCGCCCCACTTCCACCACCCCTCTAACCTTCCCTCTACACGGTCTCTCTCTGTATCCGAAAGCTCGAAAGTTTTCAGTGATGGGGAAGCCAGGTTCACGCTCAGAATCTTCGACGAAAGCAGACCGCAAGTTCGAAAAGAAGCTCGAATTTTATGCCAAGGTTAGAGATGCAGTTTCTTCCTTGGGTGCTCAGAAGGCTATTGTTAAGGTGAGGATCTTTAATTCATCCACTTTCCTTCTGTTATTCAATACCAGTACTTTACCGGCATTCTGTGTAGCGGAATTTTTTGTGTTGCATAACTTTTCTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLX9

Protein Analysis

155

Amino Acids

17.37

Weight (kDa)

11.39

Isoelectric Point (pI)

29.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 23
AciI CCGC 7 cut(s) 49, 52, 88, 91, 154, 277, 431
AclWI GGATC 1 cut(s) 374
AcsI RAATTY 3 cut(s) 72, 299, 434
AfaI GTAC 1 cut(s) 409
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 1 cut(s) 400
AjnI CCWGG 2 cut(s) 102, 241
AloI GAACNNNNNNTCC 2 cut(s) 229, 261
AluBI AGCT 2 cut(s) 215, 295
AluI AGCT 2 cut(s) 215, 295
Alw21I GWGCWC 1 cut(s) 343
Alw26I GTCTC 1 cut(s) 200
AlwI GGATC 1 cut(s) 374
ApoI RAATTY 3 cut(s) 72, 299, 434
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
Asp700I GAANNNNTTC 1 cut(s) 223
AspLEI GCGC 1 cut(s) 24
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 373
AsuII TTCGAA 1 cut(s) 285
AvaII GGWCC 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 343
BccI CCATC 2 cut(s) 135, 226
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BciT130I CCWGG 2 cut(s) 104, 243
BciVI GTATCC 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 200
BfuI GTATCC 1 cut(s) 216
BisI GCNGC 2 cut(s) 52, 91
BlsI GCNGC 2 cut(s) 53, 92
BmcAI AGTACT 1 cut(s) 409
Bme1390I CCNGG 2 cut(s) 104, 243
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 2 cut(s) 108, 109
BmrFI CCNGG 2 cut(s) 104, 243
BmsI GCATC 1 cut(s) 310
Bpu14I TTCGAA 1 cut(s) 285
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 4 cut(s) 102, 103, 309, 333
BsaWI WCCGGW 1 cut(s) 115
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse118I RCCGGY 1 cut(s) 415
Bse1I ACTGG 1 cut(s) 405
BseBI CCWGG 2 cut(s) 104, 243
BseDI CCNNGG 4 cut(s) 102, 103, 309, 333
BseGI GGATG 1 cut(s) 377
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMII CTCAG 2 cut(s) 267, 356
BseNI ACTGG 1 cut(s) 405
BseYI CCCAGC 1 cut(s) 81
Bsh1285I CGRYCG 1 cut(s) 120
BsiEI CGRYCG 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 343
BsiSI CCGG 2 cut(s) 116, 416
BslFI GGGAC 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 93
BsmI GAATGC 1 cut(s) 419
Bso31I GGTCTC 1 cut(s) 200
Bsp119I TTCGAA 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 343
Bsp143I GATC 1 cut(s) 366
BspACI CCGC 7 cut(s) 49, 52, 88, 91, 154, 277, 431
BspCNI CTCAG 2 cut(s) 266, 355
BspLI GGNNCC 2 cut(s) 108, 109
BspPI GGATC 1 cut(s) 374
BspT104I TTCGAA 1 cut(s) 285
BspTNI GGTCTC 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 415
BsrI ACTGG 1 cut(s) 405
BssAI RCCGGY 1 cut(s) 415
BssECI CCNNGG 4 cut(s) 102, 103, 309, 333
BssMI GATC 1 cut(s) 366
BssT1I CCWWGG 2 cut(s) 309, 333
Bst2UI CCWGG 2 cut(s) 104, 243
Bst4CI ACNGT 1 cut(s) 194
BstBI TTCGAA 1 cut(s) 285
BstDEI CTNAG 2 cut(s) 253, 342
BstF5I GGATG 1 cut(s) 377
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 1 cut(s) 369
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 1 cut(s) 366
BstMCI CGRYCG 1 cut(s) 120
BstMWI GCNNNNNNNGC 1 cut(s) 347
BstNI CCWGG 2 cut(s) 104, 243
BstSCI CCNGG 2 cut(s) 102, 241
BstX2I RGATCY 1 cut(s) 366
BstYI RGATCY 1 cut(s) 366
BsuI GTATCC 1 cut(s) 216
BtgZI GCGATG 1 cut(s) 113
BtsCI GGATG 1 cut(s) 377
BtsIMutI CAGTG 2 cut(s) 57, 234
CfoI GCGC 1 cut(s) 24
Cfr10I RCCGGY 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 107
Csp6I GTAC 1 cut(s) 408
CviJI RGCY 5 cut(s) 85, 215, 241, 295, 350
CviKI_1 RGCY 5 cut(s) 85, 215, 241, 295, 350
CviQI GTAC 1 cut(s) 408
DdeI CTNAG 2 cut(s) 253, 342
DpnI GATC 1 cut(s) 368
DpnII GATC 1 cut(s) 366
Eco130I CCWWGG 2 cut(s) 309, 333
Eco31I GGTCTC 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 107
EcoO109I RGGNCCY 1 cut(s) 107
EcoRII CCWGG 2 cut(s) 102, 241
EcoT14I CCWWGG 2 cut(s) 309, 333
ErhI CCWWGG 2 cut(s) 309, 333
FaiI YATR 2 cut(s) 306, 450
FaqI GGGAC 1 cut(s) 93
FauI CCCGC 2 cut(s) 56, 95
Fnu4HI GCNGC 2 cut(s) 52, 91
FokI GGATG 1 cut(s) 364
Fsp4HI GCNGC 2 cut(s) 52, 91
FspI TGCGCA 1 cut(s) 23
GlaI GCGC 1 cut(s) 23
GluI GCNGC 2 cut(s) 52, 91
GsaI CCCAGC 1 cut(s) 85
HapII CCGG 2 cut(s) 116, 416
HhaI GCGC 1 cut(s) 24
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HinfI GANTC 1 cut(s) 257
HpaII CCGG 2 cut(s) 116, 416
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 1 cut(s) 248
Hpy188I TCNGA 3 cut(s) 210, 256, 345
Hpy8I GTNNAC 1 cut(s) 248
Hpy99I CGWCG 1 cut(s) 268
HpyAV CCTTC 3 cut(s) 190, 340, 398
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4V TGCA 2 cut(s) 323, 448
HpyF10VI GCNNNNNNNGC 1 cut(s) 347
HpyF3I CTNAG 2 cut(s) 253, 342
HspAI GCGC 1 cut(s) 22
KflI GGGWCCC 1 cut(s) 107
Kzo9I GATC 1 cut(s) 366
LpnPI CCDG 9 cut(s) 32, 89, 95, 116, 129, 228, 255, 418, 429
LweI GCATC 1 cut(s) 310
MalI GATC 1 cut(s) 368
MboI GATC 1 cut(s) 366
MboII GAAGA 2 cut(s) 252, 321
MflI RGATCY 1 cut(s) 366
MhlI GDGCHC 1 cut(s) 343
MluCI AATT 4 cut(s) 72, 299, 373, 434
MmeI TCCRAC 1 cut(s) 101
MnlI CCTC 4 cut(s) 43, 183, 195, 357
MroXI GAANNNNTTC 1 cut(s) 223
MseI TTAA 2 cut(s) 357, 372
MspI CCGG 2 cut(s) 116, 416
MspR9I CCNGG 2 cut(s) 104, 243
Mva1269I GAATGC 1 cut(s) 419
MvaI CCWGG 2 cut(s) 104, 243
MwoI GCNNNNNNNGC 1 cut(s) 347
NdeII GATC 1 cut(s) 366
NlaIV GGNNCC 2 cut(s) 108, 109
NsbI TGCGCA 1 cut(s) 23
NspV TTCGAA 1 cut(s) 285
PasI CCCWGGG 1 cut(s) 103
PctI GAATGC 1 cut(s) 419
PdmI GAANNNNTTC 1 cut(s) 223
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 2 cut(s) 53, 92
PpuMI RGGWCCY 1 cut(s) 107
Psp5II RGGWCCY 1 cut(s) 107
Psp6I CCWGG 2 cut(s) 102, 241
PspFI CCCAGC 1 cut(s) 81
PspGI CCWGG 2 cut(s) 102, 241
PspN4I GGNNCC 2 cut(s) 108, 109
PspPI GGNCC 1 cut(s) 107
PspPPI RGGWCCY 1 cut(s) 107
PsuI RGATCY 1 cut(s) 366
RsaI GTAC 1 cut(s) 409
RsaNI GTAC 1 cut(s) 408
SaqAI TTAA 2 cut(s) 357, 372
SatI GCNGC 2 cut(s) 52, 91
Sau3AI GATC 1 cut(s) 366
Sau96I GGNCC 1 cut(s) 107
ScaI AGTACT 1 cut(s) 409
ScrFI CCNGG 2 cut(s) 104, 243
SduI GDGCHC 1 cut(s) 343
SetI ASST 7 cut(s) 35, 182, 217, 247, 297, 315, 363
SfaNI GCATC 1 cut(s) 310
SfuI TTCGAA 1 cut(s) 285
SinI GGWCC 1 cut(s) 107
Sse9I AATT 4 cut(s) 72, 299, 373, 434
SsiI CCGC 7 cut(s) 49, 52, 88, 91, 154, 277, 431
StyD4I CCNGG 2 cut(s) 102, 241
StyI CCWWGG 2 cut(s) 309, 333
TaaI ACNGT 1 cut(s) 194
TaqI TCGA 4 cut(s) 217, 263, 285, 297
TasI AATT 4 cut(s) 72, 299, 373, 434
TatI WGTACW 1 cut(s) 407
TauI GCSGC 2 cut(s) 54, 93
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 2 cut(s) 357, 372
Tru9I TTAA 2 cut(s) 357, 372
TscAI CASTG 2 cut(s) 64, 234
TspDTI ATGAA 1 cut(s) 366
TspRI CASTG 2 cut(s) 64, 234
VpaK11BI GGWCC 1 cut(s) 107
XapI RAATTY 3 cut(s) 72, 299, 434
XmnI GAANNNNTTC 1 cut(s) 223
ZrmI AGTACT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.