Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

37673224 .. 37674274

Gene Structure 1051 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGATATCTGTTGGGAATCATGGTGGCTGGCTTTAGCTGTAGGCGTAAAAATAGAAACGTTATGTAGTTGGGCTGCAGCTTCCGGCCAGGTTTCCCTCAATGCAATGCTACTCCCAGCTGCTCTCTACTTTTGGCAAATACCTCATTTTATGGCCCTAGCATACTTGTGCCGTAATGACTATGCTGCTGGAGGATTTAGGATGTTCTCCCTTGCCGATGCTTGTGGTCAGAGAACGGCCTCAGTAGCTTTAAGGAATTGCATATACATGATCCCTTTGGGGTTTTTGGCCTATGACTGTAAGTCCAAGACTCACAAACCATCGTTCTTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0015980 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00190 ko00860 ko01100 ko01110 ko04714 map00190 map00860 map01100 map01110 map04714

Pfam Domains

Protein Families

UbiA

Protein Analysis

112

Amino Acids

12.45

Weight (kDa)

8.25

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UbiA	PF01040	5 - 92	3.8e-08	UbiA prenyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	59
AclWI	GGATC	1 cut(s)	265
AcoI	YGGCCR	1 cut(s)	85
AhdI	GACNNNNNGTC	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	4 cut(s)	38, 80, 119, 248
AluI	AGCT	4 cut(s)	38, 80, 119, 248
AlwI	GGATC	1 cut(s)	265
AoxI	GGCC	4 cut(s)	85, 153, 237, 288
ApeKI	GCWGC	4 cut(s)	74, 77, 119, 185
AspS9I	GGNCC	1 cut(s)	154
BbvI	GCAGC	4 cut(s)	61, 89, 106, 172
BccI	CCATC	1 cut(s)	328
BceAI	ACGGC	2 cut(s)	156, 252
BciT130I	CCWGG	1 cut(s)	89
BfaI	CTAG	1 cut(s)	158
BfmI	CTRYAG	2 cut(s)	39, 75
BisI	GCNGC	4 cut(s)	75, 78, 120, 186
BlsI	GCNGC	4 cut(s)	76, 79, 121, 187
Bme1390I	CCNGG	1 cut(s)	89
BmeRI	GACNNNNNGTC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	154
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	208
BpmI	CTGGAG	1 cut(s)	210
Bse3DI	GCAATG	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	89
BseGI	GGATG	1 cut(s)	207
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	255
BseXI	GCAGC	4 cut(s)	61, 89, 106, 172
BseYI	CCCAGC	1 cut(s)	115
BshFI	GGCC	4 cut(s)	87, 155, 239, 290
BsiSI	CCGG	1 cut(s)	84
BsnI	GGCC	4 cut(s)	87, 155, 239, 290
Bsp143I	GATC	1 cut(s)	270
BspANI	GGCC	4 cut(s)	87, 155, 239, 290
BspCNI	CTCAG	1 cut(s)	254
BspMAI	CTGCAG	1 cut(s)	79
BspPI	GGATC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	111
BssMI	GATC	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	241
BstF5I	GGATG	1 cut(s)	207
BstKTI	GATC	1 cut(s)	273
BstMBI	GATC	1 cut(s)	270
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNI	CCWGG	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	87
BstSFI	CTRYAG	2 cut(s)	39, 75
BstV1I	GCAGC	4 cut(s)	61, 89, 106, 172
BsuRI	GGCC	4 cut(s)	87, 155, 239, 290
BtsCI	GGATG	1 cut(s)	207
Cac8I	GCNNGC	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	154
CviAII	CATG	2 cut(s)	21, 268
DdeI	CTNAG	1 cut(s)	241
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
DriI	GACNNNNNGTC	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	85
Eam1105I	GACNNNNNGTC	1 cut(s)	301
Eco32I	GATATC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	87
EcoRV	GATATC	1 cut(s)	7
FaeI	CATG	2 cut(s)	24, 271
FaiI	YATR	9 cut(s)	22, 64, 152, 163, 183, 263, 265, 269, 294
FatI	CATG	2 cut(s)	20, 267
Fnu4HI	GCNGC	4 cut(s)	75, 78, 120, 186
FokI	GGATG	1 cut(s)	214
Fsp4HI	GCNGC	4 cut(s)	75, 78, 120, 186
FspBI	CTAG	1 cut(s)	158
GluI	GCNGC	4 cut(s)	75, 78, 120, 186
GsaI	CCCAGC	1 cut(s)	119
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	4 cut(s)	87, 155, 239, 290
HapII	CCGG	1 cut(s)	84
Hin1II	CATG	2 cut(s)	24, 271
HinfI	GANTC	2 cut(s)	17, 310
HpaII	CCGG	1 cut(s)	84
Hpy188I	TCNGA	1 cut(s)	231
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	3 cut(s)	77, 104, 261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	1 cut(s)	241
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	24, 271
Kzo9I	GATC	1 cut(s)	270
LpnPI	CCDG	6 cut(s)	14, 74, 97, 101, 129, 174
Lsp1109I	GCAGC	4 cut(s)	61, 89, 106, 172
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	1 cut(s)	59
MalI	GATC	1 cut(s)	272
MboI	GATC	1 cut(s)	270
MluCI	AATT	1 cut(s)	256
MlyI	GAGTC	1 cut(s)	304
MnlI	CCTC	4 cut(s)	107, 153, 185, 250
MseI	TTAA	1 cut(s)	251
MslI	CAYNNNNRTG	2 cut(s)	166, 266
MspA1I	CMGCKG	1 cut(s)	119
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	245
NdeII	GATC	1 cut(s)	270
NlaIII	CATG	2 cut(s)	24, 271
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	4 cut(s)	76, 79, 121, 187
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Psp1406I	AACGTT	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	87
PspFI	CCCAGC	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	154
PstI	CTGCAG	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	119
RseI	CAYNNNNRTG	2 cut(s)	166, 266
SaqAI	TTAA	1 cut(s)	251
SatI	GCNGC	4 cut(s)	75, 78, 120, 186
Sau3AI	GATC	1 cut(s)	270
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	1 cut(s)	304
ScrFI	CCNGG	1 cut(s)	89
SetI	ASST	7 cut(s)	40, 62, 82, 93, 121, 145, 250
SfaNI	GCATC	1 cut(s)	208
SfcI	CTRYAG	2 cut(s)	39, 75
SmiMI	CAYNNNNRTG	2 cut(s)	166, 266
Sse9I	AATT	1 cut(s)	256
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	299
TaiI	ACGT	1 cut(s)	62
TasI	AATT	1 cut(s)	256
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TseI	GCWGC	4 cut(s)	74, 77, 119, 185
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.