Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

37697830 .. 37700046

Gene Structure 2217 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAGAGCTTCTCGTGCTGATAACGTGTTACAAAATTTACGAGGTTCCTCTACAGTCAGTGTGACTGGAGTACGTCCTCGGGCAGCAATAACTTTATGTATTCTCTCCTCTTCTCTTCCTCTCTTTCTTTTTCTGCTCACAATTCAAAGCATACGGAGTGCTCTATTTATAGAGCAACTCCAAGCATACATCTTTGACAATATAACTTCCTTTATCTCCCAAGTCAAGATTAACTGCACGGGCATTGAAAATCCACCCAATGTCTGCAGTTTCTATGGAACAAACATACATATGCGTTCAGGACACTATTACATAAAAAGAGAAGACAACTTACTATATGCACAGTACAATTCACGAATGGACGCGACGATAAGAACCAAAGAGAGAAAACATTTGCATAAGAATGATCCTTCAAGCTCGGGCTTCACCGATCCGATGGAGTCGGAGCCCTTTCGGCGGCGGGCTGATCTCCCGTCGTTGGCTTCCAGGGCCTCGCACATGGCCCGCCAATATGGCCAGTGCTATTGGGAGCTCTCCAAAGCTCGCCTCAGCATGCTAGTCGTTGCAACTTCTGGAACTGGGTTTATTCTTGGAAGTGGCCATGCCATTGATTTTGCTGGACTTTGTTGCACATGTGTGGGTACCATGATGGTTGCAGAATCTGCTAATTCCTTAAATCAGTACCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0015980 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00190 ko00860 ko01100 ko01110 ko04714 map00190 map00860 map01100 map01110 map04714

Pfam Domains

Protein Families

UbiA

Protein Analysis

230

Amino Acids

25.49

Weight (kDa)

9.15

Isoelectric Point (pI)

53.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	641
AccB1I	GGYRCC	1 cut(s)	641
AccII	CGCG	1 cut(s)	365
AciI	CCGC	3 cut(s)	457, 460, 505
AclWI	GGATC	2 cut(s)	401, 425
AcoI	YGGCCR	2 cut(s)	514, 598
AcsI	RAATTY	1 cut(s)	34
AfaI	GTAC	4 cut(s)	72, 347, 643, 683
AfiI	CCNNNNNNNGG	2 cut(s)	456, 478
AflIII	ACRYGT	2 cut(s)	24, 632
AgsI	TTSAA	3 cut(s)	146, 248, 414
AjnI	CCWGG	1 cut(s)	485
AleI	CACNNNNGTG	1 cut(s)	635
AluBI	AGCT	4 cut(s)	8, 417, 532, 542
AluI	AGCT	4 cut(s)	8, 417, 532, 542
Alw21I	GWGCWC	2 cut(s)	163, 534
AlwI	GGATC	2 cut(s)	401, 425
AlwNI	CAGNNNCTG	2 cut(s)	662, 685
Ama87I	CYCGRG	2 cut(s)	78, 418
AoxI	GGCC	4 cut(s)	489, 501, 514, 598
ApeKI	GCWGC	1 cut(s)	83
ApoI	RAATTY	1 cut(s)	34
Asp718I	GGTACC	1 cut(s)	641
AspS9I	GGNCC	2 cut(s)	489, 502
AsuHPI	GGTGA	1 cut(s)	418
AvaI	CYCGRG	2 cut(s)	78, 418
BalI	TGGCCA	2 cut(s)	516, 600
BanI	GGYRCC	1 cut(s)	641
BanII	GRGCYC	2 cut(s)	450, 534
BarI	GAAGNNNNNNTAC	2 cut(s)	315, 347
BauI	CACGAG	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	330
Bbv12I	GWGCWC	2 cut(s)	163, 534
BbvCI	CCTCAGC	1 cut(s)	548
BbvI	GCAGC	1 cut(s)	95
BccI	CCATC	2 cut(s)	430, 643
BcgI	CGANNNNNNTGC	2 cut(s)	541, 575
BciT130I	CCWGG	1 cut(s)	487
BfaI	CTAG	1 cut(s)	557
BfmI	CTRYAG	3 cut(s)	51, 265, 686
BglI	GCCNNNNNGGC	2 cut(s)	454, 513
BisI	GCNGC	2 cut(s)	84, 458
BlsI	GCNGC	2 cut(s)	85, 459
Bme1390I	CCNGG	1 cut(s)	487
BmeT110I	CYCGRG	2 cut(s)	78, 418
BmgT120I	GGNCC	2 cut(s)	489, 502
BmiI	GGNNCC	3 cut(s)	46, 447, 643
BmrFI	CCNGG	1 cut(s)	487
BmrI	ACTGGG	1 cut(s)	588
BmuI	ACTGGG	1 cut(s)	588
BpiI	GAAGAC	1 cut(s)	330
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	87
Bpu10I	CCTNAGC	1 cut(s)	548
BsaJI	CCNNGG	2 cut(s)	77, 486
Bsc4I	CCNNNNNNNGG	2 cut(s)	456, 478
Bse1I	ACTGG	3 cut(s)	70, 517, 583
BseBI	CCWGG	1 cut(s)	487
BseDI	CCNNGG	2 cut(s)	77, 486
BseLI	CCNNNNNNNGG	2 cut(s)	456, 478
BseMII	CTCAG	1 cut(s)	562
BseNI	ACTGG	3 cut(s)	70, 517, 583
BseRI	GAGGAG	1 cut(s)	97
BseXI	GCAGC	1 cut(s)	95
BsgI	GTGCAG	1 cut(s)	220
Bsh1236I	CGCG	1 cut(s)	365
BshFI	GGCC	4 cut(s)	491, 503, 516, 600
BshNI	GGYRCC	1 cut(s)	641
BsiHKAI	GWGCWC	2 cut(s)	163, 534
BsiHKCI	CYCGRG	2 cut(s)	78, 418
BslI	CCNNNNNNNGG	2 cut(s)	456, 478
BsnI	GGCC	4 cut(s)	491, 503, 516, 600
BsoBI	CYCGRG	2 cut(s)	78, 418
Bsp1286I	GDGCHC	3 cut(s)	163, 450, 534
Bsp143I	GATC	3 cut(s)	406, 430, 466
BspACI	CCGC	3 cut(s)	457, 460, 505
BspANI	GGCC	4 cut(s)	491, 503, 516, 600
BspCNI	CTCAG	1 cut(s)	561
BspFNI	CGCG	1 cut(s)	365
BspLI	GGNNCC	3 cut(s)	46, 447, 643
BspMAI	CTGCAG	1 cut(s)	269
BspPI	GGATC	2 cut(s)	401, 425
BspT107I	GGYRCC	1 cut(s)	641
BsrI	ACTGG	3 cut(s)	70, 517, 583
BssECI	CCNNGG	2 cut(s)	77, 486
BssMI	GATC	3 cut(s)	406, 430, 466
BssSI	CACGAG	1 cut(s)	12
Bst2BI	CACGAG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	487
Bst4CI	ACNGT	2 cut(s)	55, 345
Bst6I	CTCTTC	2 cut(s)	115, 120
BstAPI	GCANNNNNTGC	1 cut(s)	662
BstC8I	GCNNGC	4 cut(s)	462, 505, 544, 554
BstDEI	CTNAG	1 cut(s)	548
BstFNI	CGCG	1 cut(s)	365
BstKTI	GATC	3 cut(s)	409, 433, 469
BstMBI	GATC	3 cut(s)	406, 430, 466
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 454, 488, 513, 662
BstNI	CCWGG	1 cut(s)	487
BstNSI	RCATGY	2 cut(s)	556, 636
BstSCI	CCNGG	1 cut(s)	485
BstSFI	CTRYAG	3 cut(s)	51, 265, 686
BstUI	CGCG	1 cut(s)	365
BstV1I	GCAGC	1 cut(s)	95
BstV2I	GAAGAC	1 cut(s)	330
BsuRI	GGCC	4 cut(s)	491, 503, 516, 600
BtsIMutI	CAGTG	2 cut(s)	64, 524
Cac8I	GCNNGC	4 cut(s)	462, 505, 544, 554
CaiI	CAGNNNCTG	2 cut(s)	662, 685
Cfr13I	GGNCC	2 cut(s)	489, 502
CseI	GACGC	1 cut(s)	371
Csp6I	GTAC	4 cut(s)	71, 346, 642, 682
CviAII	CATG	5 cut(s)	499, 553, 602, 633, 646
CviQI	GTAC	4 cut(s)	71, 346, 642, 682
DdeI	CTNAG	1 cut(s)	548
DpnI	GATC	3 cut(s)	408, 432, 468
DpnII	GATC	3 cut(s)	406, 430, 466
EaeI	YGGCCR	2 cut(s)	514, 598
Eam1104I	CTCTTC	2 cut(s)	115, 120
EarI	CTCTTC	2 cut(s)	115, 120
Ecl136II	GAGCTC	1 cut(s)	532
Eco24I	GRGCYC	2 cut(s)	450, 534
Eco53kI	GAGCTC	1 cut(s)	532
Eco88I	CYCGRG	2 cut(s)	78, 418
EcoICRI	GAGCTC	1 cut(s)	532
EcoO109I	RGGNCCY	1 cut(s)	489
EcoRII	CCWGG	1 cut(s)	485
EcoT38I	GRGCYC	2 cut(s)	450, 534
FaeI	CATG	5 cut(s)	502, 556, 605, 636, 649
FatI	CATG	5 cut(s)	498, 552, 601, 632, 645
FauI	CCCGC	2 cut(s)	453, 512
FauNDI	CATATG	1 cut(s)	291
Fnu4HI	GCNGC	2 cut(s)	84, 458
FriOI	GRGCYC	2 cut(s)	450, 534
Fsp4HI	GCNGC	2 cut(s)	84, 458
FspBI	CTAG	1 cut(s)	557
GluI	GCNGC	2 cut(s)	84, 458
GsuI	CTGGAG	1 cut(s)	87
HaeIII	GGCC	4 cut(s)	491, 503, 516, 600
HgaI	GACGC	1 cut(s)	371
Hin1II	CATG	5 cut(s)	502, 556, 605, 636, 649
HinfI	GANTC	2 cut(s)	440, 659
HphI	GGTGA	1 cut(s)	418
Hpy188I	TCNGA	2 cut(s)	435, 445
Hpy188III	TCNNGA	4 cut(s)	226, 300, 354, 573
Hpy99I	CGWCG	2 cut(s)	370, 478
HpyAV	CCTTC	1 cut(s)	420
HpyCH4III	ACNGT	2 cut(s)	55, 345
HpyCH4IV	ACGT	2 cut(s)	24, 73
HpyCH4V	TGCA	7 cut(s)	237, 267, 341, 397, 566, 630, 656
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 454, 488, 513, 662
HpyF3I	CTNAG	1 cut(s)	548
HpySE526I	ACGT	2 cut(s)	24, 73
Hsp92II	CATG	5 cut(s)	502, 556, 605, 636, 649
KpnI	GGTACC	1 cut(s)	645
Kzo9I	GATC	3 cut(s)	406, 430, 466
LmnI	GCTCC	2 cut(s)	445, 529
LpnPI	CCDG	8 cut(s)	51, 285, 472, 499, 530, 558, 564, 603
Lsp1109I	GCAGC	1 cut(s)	95
MaeI	CTAG	1 cut(s)	557
MaeII	ACGT	2 cut(s)	24, 73
MaeIII	GTNAC	2 cut(s)	27, 61
MalI	GATC	3 cut(s)	408, 432, 468
MboI	GATC	3 cut(s)	406, 430, 466
MboII	GAAGA	3 cut(s)	102, 107, 335
MhlI	GDGCHC	3 cut(s)	163, 450, 534
MlsI	TGGCCA	2 cut(s)	516, 600
MluCI	AATT	4 cut(s)	34, 141, 349, 667
MluNI	TGGCCA	2 cut(s)	516, 600
MlyI	GAGTC	1 cut(s)	449
MmeI	TCCRAC	1 cut(s)	423
MnlI	CCTC	7 cut(s)	35, 58, 87, 118, 129, 502, 557
Mox20I	TGGCCA	2 cut(s)	516, 600
MscI	TGGCCA	2 cut(s)	516, 600
MseI	TTAA	2 cut(s)	231, 674
MslI	CAYNNNNRTG	3 cut(s)	290, 402, 635
Msp20I	TGGCCA	2 cut(s)	516, 600
MspR9I	CCNGG	1 cut(s)	487
MvaI	CCWGG	1 cut(s)	487
MvnI	CGCG	1 cut(s)	365
MwoI	GCNNNNNNNGC	5 cut(s)	14, 454, 488, 513, 662
NdeI	CATATG	1 cut(s)	291
NdeII	GATC	3 cut(s)	406, 430, 466
NlaIII	CATG	5 cut(s)	502, 556, 605, 636, 649
NlaIV	GGNNCC	3 cut(s)	46, 447, 643
NmuCI	GTSAC	1 cut(s)	61
NspI	RCATGY	2 cut(s)	556, 636
OliI	CACNNNNGTG	1 cut(s)	635
PaeI	GCATGC	1 cut(s)	556
PciI	ACATGT	1 cut(s)	632
PfeI	GAWTC	1 cut(s)	659
PkrI	GCNGC	2 cut(s)	85, 459
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
PscI	ACATGT	1 cut(s)	632
Psp124BI	GAGCTC	1 cut(s)	534
Psp6I	CCWGG	1 cut(s)	485
PspGI	CCWGG	1 cut(s)	485
PspN4I	GGNNCC	3 cut(s)	46, 447, 643
PspPI	GGNCC	2 cut(s)	489, 502
PstI	CTGCAG	1 cut(s)	269
PstNI	CAGNNNCTG	2 cut(s)	662, 685
RsaI	GTAC	4 cut(s)	72, 347, 643, 683
RsaNI	GTAC	4 cut(s)	71, 346, 642, 682
RseI	CAYNNNNRTG	3 cut(s)	290, 402, 635
SacI	GAGCTC	1 cut(s)	534
SaqAI	TTAA	2 cut(s)	231, 674
SatI	GCNGC	2 cut(s)	84, 458
Sau3AI	GATC	3 cut(s)	406, 430, 466
Sau96I	GGNCC	2 cut(s)	489, 502
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	1 cut(s)	487
SduI	GDGCHC	3 cut(s)	163, 450, 534
SetI	ASST	8 cut(s)	10, 27, 46, 76, 419, 534, 544, 687
SfcI	CTRYAG	3 cut(s)	51, 265, 686
SmiMI	CAYNNNNRTG	3 cut(s)	290, 402, 635
SphI	GCATGC	1 cut(s)	556
Sse9I	AATT	4 cut(s)	34, 141, 349, 667
SsiI	CCGC	3 cut(s)	457, 460, 505
SspMI	CTAG	1 cut(s)	557
SstI	GAGCTC	1 cut(s)	534
StyD4I	CCNGG	1 cut(s)	485
TaaI	ACNGT	2 cut(s)	55, 345
TaiI	ACGT	2 cut(s)	27, 76
TasI	AATT	4 cut(s)	34, 141, 349, 667
TatI	WGTACW	1 cut(s)	345
TauI	GCSGC	1 cut(s)	460
TfiI	GAWTC	1 cut(s)	659
Tru1I	TTAA	2 cut(s)	231, 674
Tru9I	TTAA	2 cut(s)	231, 674
TscAI	CASTG	2 cut(s)	64, 524
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	61
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	2 cut(s)	64, 524
XapI	RAATTY	1 cut(s)	34
XceI	RCATGY	2 cut(s)	556, 636
XspI	CTAG	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.