pycom15g38030

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
37933635 .. 37934420
786 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 786 bp
ATGGCAAACTCCAAGAGTACATCAAATATCAGAAATTTTATGTATTCCGGAAAGCATCCTTTACTTCCTCCTAAAAGTCCATTTCCTAGTGTTGCCCCATCATATGCAGATTATGTCCTTAGTCCTGCAATTGGATCAAAAATTGTTCAGAAGCCTAGAGAGGGAAATGCACATCACCAGAGGACTTCCTCAGAGAGCCTACTTATAGAGGAACAACCTTCTTGGCTTGATGATCTCCTTAATGAGCCAGACACACCTATACGCAGAGGAGGTCATCATCGTTCATCAAGTGACTCTTTTGCATATGTGGATGCAATTAATGCTTCCAACCTTGATTATGCCACTCAAGACGAGTACAAATATCATAATATGATTTCTGCACCCTCTTGGGGATCTCAAGACTTTGATCCTCGAAAAGATTTACGACATGCTTCATTATACACAGAACTGAACTTGGTGAAGCAGAAGAATAAAGCATGGGAGTCTTCTTTGAATAGTGTAAATAACCTGGGGGGCCTTCCTTCTGCCAGGGATAACATTATTCTTCAGAGTTCAAGATCATTATCTACACCACAAGAAGCTGATGGGATTGCCTCTACAGTGAGTGAAAAGCAGGATCATTTTGATTCTGGTCTTCATGATCCAAAGGCTTCTTCAGAGAGAAAGGACAATTCCAATGCTAAGCCTTATGCATCTGAGACAGATGCAAAACGTGCTAAACAGTATGTAGTTTCTTTAGTATTTTACCTATACTTTTACTCATTTTACCTGATACCAACAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

262

Amino Acids

29.22

Weight (kDa)

6.76

Isoelectric Point (pI)

66.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 47
AclWI GGATC 5 cut(s) 142, 400, 401, 624, 635
AcsI RAATTY 1 cut(s) 34
AcuI CTGAAG 2 cut(s) 530, 639
AfaI GTAC 2 cut(s) 19, 356
AfiI CCNNNNNNNGG 3 cut(s) 131, 161, 389
AgsI TTSAA 2 cut(s) 493, 555
AjnI CCWGG 2 cut(s) 507, 527
AjuI GAANNNNNNNTTGG 2 cut(s) 637, 669
AluBI AGCT 1 cut(s) 581
AluI AGCT 1 cut(s) 581
Alw26I GTCTC 1 cut(s) 692
AlwI GGATC 5 cut(s) 142, 400, 401, 624, 635
Aor13HI TCCGGA 1 cut(s) 47
AoxI GGCC 1 cut(s) 514
ApoI RAATTY 1 cut(s) 34
AseI ATTAAT 1 cut(s) 318
AspS9I GGNCC 1 cut(s) 514
AsuHPI GGTGA 2 cut(s) 167, 469
BbsI GAAGAC 2 cut(s) 477, 626
BccI CCATC 2 cut(s) 106, 578
BciT130I CCWGG 2 cut(s) 509, 529
BcoDI GTCTC 1 cut(s) 692
BfaI CTAG 2 cut(s) 87, 156
BfmI CTRYAG 1 cut(s) 597
BlpI GCTNAGC 1 cut(s) 681
Bme1390I CCNGG 2 cut(s) 509, 529
BmgT120I GGNCC 1 cut(s) 514
BmiI GGNNCC 1 cut(s) 515
BmrFI CCNGG 2 cut(s) 509, 529
BmsI GCATC 4 cut(s) 64, 301, 694, 701
BpiI GAAGAC 2 cut(s) 477, 626
Bpu1102I GCTNAGC 1 cut(s) 681
BpuEI CTTGAG 2 cut(s) 330, 381
BsaBI GATNNNNATC 1 cut(s) 562
BsaJI CCNNGG 2 cut(s) 508, 528
BsaWI WCCGGW 1 cut(s) 47
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 161, 389
Bse8I GATNNNNATC 1 cut(s) 562
BseAI TCCGGA 1 cut(s) 47
BseBI CCWGG 2 cut(s) 509, 529
BseDI CCNNGG 2 cut(s) 508, 528
BseGI GGATG 2 cut(s) 55, 316
BseJI GATNNNNATC 1 cut(s) 562
BseLI CCNNNNNNNGG 3 cut(s) 131, 161, 389
BseMII CTCAG 2 cut(s) 204, 687
BseRI GAGGAG 1 cut(s) 282
BsgI GTGCAG 1 cut(s) 363
BshFI GGCC 1 cut(s) 516
BsiSI CCGG 1 cut(s) 48
BslI CCNNNNNNNGG 3 cut(s) 131, 161, 389
BsmAI GTCTC 1 cut(s) 692
BsnI GGCC 1 cut(s) 516
Bsp13I TCCGGA 1 cut(s) 47
Bsp143I GATC 7 cut(s) 134, 232, 392, 406, 557, 616, 640
Bsp1720I GCTNAGC 1 cut(s) 681
BspANI GGCC 1 cut(s) 516
BspCNI CTCAG 2 cut(s) 203, 688
BspEI TCCGGA 1 cut(s) 47
BspHI TCATGA 1 cut(s) 637
BspLI GGNNCC 1 cut(s) 515
BspPI GGATC 5 cut(s) 142, 400, 401, 624, 635
BssECI CCNNGG 2 cut(s) 508, 528
BssMI GATC 7 cut(s) 134, 232, 392, 406, 557, 616, 640
Bst2UI CCWGG 2 cut(s) 509, 529
Bst4CI ACNGT 2 cut(s) 601, 723
BstAPI GCANNNNNTGC 2 cut(s) 320, 713
BstDEI CTNAG 4 cut(s) 119, 190, 681, 696
BstF5I GGATG 2 cut(s) 55, 316
BstKTI GATC 7 cut(s) 137, 235, 395, 409, 560, 619, 643
BstMAI GTCTC 1 cut(s) 692
BstMBI GATC 7 cut(s) 134, 232, 392, 406, 557, 616, 640
BstMWI GCNNNNNNNGC 2 cut(s) 320, 713
BstNI CCWGG 2 cut(s) 509, 529
BstNSI RCATGY 1 cut(s) 431
BstSCI CCNGG 2 cut(s) 507, 527
BstSFI CTRYAG 1 cut(s) 597
BstV2I GAAGAC 2 cut(s) 477, 626
BstX2I RGATCY 1 cut(s) 392
BstYI RGATCY 1 cut(s) 392
BsuRI GGCC 1 cut(s) 516
BtsCI GGATG 2 cut(s) 55, 316
BtsIMutI CAGTG 1 cut(s) 606
CciI TCATGA 1 cut(s) 637
Cfr13I GGNCC 1 cut(s) 514
Csp6I GTAC 2 cut(s) 18, 355
CviAII CATG 3 cut(s) 428, 477, 638
CviJI RGCY 8 cut(s) 154, 198, 226, 247, 516, 581, 650, 685
CviKI_1 RGCY 8 cut(s) 154, 198, 226, 247, 516, 581, 650, 685
CviQI GTAC 2 cut(s) 18, 355
DdeI CTNAG 4 cut(s) 119, 190, 681, 696
DpnI GATC 7 cut(s) 136, 234, 394, 408, 559, 618, 642
DpnII GATC 7 cut(s) 134, 232, 392, 406, 557, 616, 640
Eco57I CTGAAG 2 cut(s) 530, 639
EcoO109I RGGNCCY 1 cut(s) 514
EcoRII CCWGG 2 cut(s) 507, 527
EcoT22I ATGCAT 1 cut(s) 694
FaeI CATG 3 cut(s) 431, 480, 641
FalI AAGNNNNNCTT 2 cut(s) 280, 312
FatI CATG 3 cut(s) 427, 476, 637
FauNDI CATATG 2 cut(s) 103, 304
FokI GGATG 2 cut(s) 42, 323
FspBI CTAG 2 cut(s) 87, 156
HaeIII GGCC 1 cut(s) 516
HapII CCGG 1 cut(s) 48
Hin1II CATG 3 cut(s) 431, 480, 641
HinfI GANTC 3 cut(s) 293, 482, 626
HpaII CCGG 1 cut(s) 48
HphI GGTGA 2 cut(s) 167, 469
Hpy188I TCNGA 6 cut(s) 32, 150, 193, 549, 658, 697
Hpy188III TCNNGA 5 cut(s) 48, 347, 398, 555, 638
HpyAV CCTTC 3 cut(s) 228, 527, 531
HpyCH4III ACNGT 2 cut(s) 601, 723
HpyCH4IV ACGT 1 cut(s) 712
HpyCH4V TGCA 8 cut(s) 107, 128, 170, 302, 314, 380, 692, 707
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 713
HpyF3I CTNAG 4 cut(s) 119, 190, 681, 696
HpySE526I ACGT 1 cut(s) 712
Hsp92II CATG 3 cut(s) 431, 480, 641
Kpn2I TCCGGA 1 cut(s) 47
Kzo9I GATC 7 cut(s) 134, 232, 392, 406, 557, 616, 640
LweI GCATC 4 cut(s) 64, 301, 694, 701
MaeI CTAG 2 cut(s) 87, 156
MaeII ACGT 1 cut(s) 712
MaeIII GTNAC 1 cut(s) 290
MalI GATC 7 cut(s) 136, 234, 394, 408, 559, 618, 642
MboI GATC 7 cut(s) 134, 232, 392, 406, 557, 616, 640
MboII GAAGA 5 cut(s) 477, 478, 536, 626, 645
MfeI CAATTG 1 cut(s) 129
MflI RGATCY 1 cut(s) 392
MluCI AATT 5 cut(s) 34, 129, 141, 315, 670
MlyI GAGTC 2 cut(s) 287, 491
MmeI TCCRAC 1 cut(s) 351
Mph1103I ATGCAT 1 cut(s) 694
MroI TCCGGA 1 cut(s) 47
MseI TTAA 2 cut(s) 240, 318
MspI CCGG 1 cut(s) 48
MspR9I CCNGG 2 cut(s) 509, 529
MunI CAATTG 1 cut(s) 129
MvaI CCWGG 2 cut(s) 509, 529
MwoI GCNNNNNNNGC 2 cut(s) 320, 713
NdeI CATATG 2 cut(s) 103, 304
NdeII GATC 7 cut(s) 134, 232, 392, 406, 557, 616, 640
NlaIII CATG 3 cut(s) 431, 480, 641
NlaIV GGNNCC 1 cut(s) 515
NmuCI GTSAC 1 cut(s) 290
NsiI ATGCAT 1 cut(s) 694
NspI RCATGY 1 cut(s) 431
PagI TCATGA 1 cut(s) 637
PfeI GAWTC 1 cut(s) 626
PleI GAGTC 2 cut(s) 287, 490
PpsI GAGTC 2 cut(s) 287, 490
PshBI ATTAAT 1 cut(s) 318
Psp6I CCWGG 2 cut(s) 507, 527
PspGI CCWGG 2 cut(s) 507, 527
PspN4I GGNNCC 1 cut(s) 515
PspPI GGNCC 1 cut(s) 514
PsuI RGATCY 1 cut(s) 392
RsaI GTAC 2 cut(s) 19, 356
RsaNI GTAC 2 cut(s) 18, 355
SaqAI TTAA 2 cut(s) 240, 318
Sau3AI GATC 7 cut(s) 134, 232, 392, 406, 557, 616, 640
Sau96I GGNCC 1 cut(s) 514
SchI GAGTC 2 cut(s) 287, 491
ScrFI CCNGG 2 cut(s) 509, 529
SetI ASST 9 cut(s) 220, 259, 274, 333, 510, 583, 715, 750, 771
SfaNI GCATC 4 cut(s) 64, 301, 694, 701
SfcI CTRYAG 1 cut(s) 597
SmlI CTYRAG 2 cut(s) 345, 396
SmoI CTYRAG 2 cut(s) 345, 396
Sse9I AATT 5 cut(s) 34, 129, 141, 315, 670
SspMI CTAG 2 cut(s) 87, 156
StyD4I CCNGG 2 cut(s) 507, 527
TaaI ACNGT 2 cut(s) 601, 723
TaiI ACGT 1 cut(s) 715
TaqI TCGA 1 cut(s) 412
TasI AATT 5 cut(s) 34, 129, 141, 315, 670
TatI WGTACW 2 cut(s) 17, 354
TfiI GAWTC 1 cut(s) 626
Tru1I TTAA 2 cut(s) 240, 318
Tru9I TTAA 2 cut(s) 240, 318
TscAI CASTG 1 cut(s) 606
TseFI GTSAC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 3 cut(s) 273, 423, 626
TspRI CASTG 1 cut(s) 606
VspI ATTAAT 1 cut(s) 318
XapI RAATTY 1 cut(s) 34
XceI RCATGY 1 cut(s) 431
XspI CTAG 2 cut(s) 87, 156
Zsp2I ATGCAT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.