Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

38057592 .. 38061340

Gene Structure 3749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGAGTTTGCCTGAATATAAATTTATTCAAAAAATTGTTGAAGATATTTCGGTCCAAGTTTTGGATAGTACCCATTTGAATGTGGCAAATTATCCAGTTGGAATAAATATGGCACAAGATTTCAGGCAGCCGGAAACTCAGATAAGCAGGATGACGTGTTTGCAGAAGAAGTTTGAAATAGTTTGCCAATTCTTATTCCTTTTTTGTTGGATCAGCTTCGTAGTATTTTGGGTCCGTATCGCCGTACGCCACGGTTTTTTTGATATATTTTTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0047484 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0080134 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901000 GO:1901001 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

93

Amino Acids

10.99

Weight (kDa)

6.06

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	61
AclWI	GGATC	1 cut(s)	218
AcsI	RAATTY	1 cut(s)	20
AfaI	GTAC	2 cut(s)	70, 246
AfiI	CCNNNNNNNGG	1 cut(s)	61
AflIII	ACRYGT	1 cut(s)	155
AgsI	TTSAA	5 cut(s)	29, 41, 79, 176, 275
AjiI	CACGTC	1 cut(s)	156
AluBI	AGCT	1 cut(s)	216
AluI	AGCT	1 cut(s)	216
AlwI	GGATC	1 cut(s)	218
ApeKI	GCWGC	1 cut(s)	127
ApoI	RAATTY	1 cut(s)	20
AspS9I	GGNCC	2 cut(s)	52, 232
AvaII	GGWCC	2 cut(s)	52, 232
BbvI	GCAGC	1 cut(s)	139
BceAI	ACGGC	1 cut(s)	227
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
Bme18I	GGWCC	2 cut(s)	52, 232
BmgBI	CACGTC	1 cut(s)	156
BmgT120I	GGNCC	2 cut(s)	52, 232
BmiI	GGNNCC	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	131
BsiWI	CGTACG	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	61
Bsp143I	GATC	1 cut(s)	210
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	233
BspPI	GGATC	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	254
BstDEI	CTNAG	1 cut(s)	138
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	1 cut(s)	156
BstKTI	GATC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	139
BtgI	CCRYGG	1 cut(s)	250
BtrI	CACGTC	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	156
Cfr13I	GGNCC	2 cut(s)	52, 232
Csp6I	GTAC	2 cut(s)	69, 245
CviJI	RGCY	2 cut(s)	130, 216
CviKI_1	RGCY	2 cut(s)	130, 216
CviQI	GTAC	2 cut(s)	69, 245
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
Eco47I	GGWCC	2 cut(s)	52, 232
FaiI	YATR	3 cut(s)	18, 110, 266
Fnu4HI	GCNGC	1 cut(s)	128
FokI	GGATG	1 cut(s)	163
Fsp4HI	GCNGC	1 cut(s)	128
GluI	GCNGC	1 cut(s)	128
HapII	CCGG	1 cut(s)	131
HpaII	CCGG	1 cut(s)	131
Hpy188I	TCNGA	1 cut(s)	141
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	1 cut(s)	163
HpyF3I	CTNAG	1 cut(s)	138
HpySE526I	ACGT	1 cut(s)	155
Kzo9I	GATC	1 cut(s)	210
LpnPI	CCDG	5 cut(s)	24, 108, 109, 133, 144
Lsp1109I	GCAGC	1 cut(s)	139
MaeII	ACGT	1 cut(s)	155
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MboII	GAAGA	2 cut(s)	53, 178
MluCI	AATT	4 cut(s)	20, 33, 88, 188
MmeI	TCCRAC	2 cut(s)	79, 188
MslI	CAYNNNNRTG	1 cut(s)	78
MspI	CCGG	1 cut(s)	131
NdeII	GATC	1 cut(s)	210
NlaIV	GGNNCC	1 cut(s)	233
Pfl23II	CGTACG	1 cut(s)	244
PflMI	CCANNNNNTGG	1 cut(s)	61
PkrI	GCNGC	1 cut(s)	129
PspLI	CGTACG	1 cut(s)	244
PspN4I	GGNNCC	1 cut(s)	233
PspPI	GGNCC	2 cut(s)	52, 232
RsaI	GTAC	2 cut(s)	70, 246
RsaNI	GTAC	2 cut(s)	69, 245
RseI	CAYNNNNRTG	1 cut(s)	78
SatI	GCNGC	1 cut(s)	128
Sau3AI	GATC	1 cut(s)	210
Sau96I	GGNCC	2 cut(s)	52, 232
SetI	ASST	2 cut(s)	158, 218
SgeI	CNNG	9 cut(s)	23, 68, 107, 128, 136, 143, 160, 168, 263
SinI	GGWCC	2 cut(s)	52, 232
SmiMI	CAYNNNNRTG	1 cut(s)	78
Sse9I	AATT	4 cut(s)	20, 33, 88, 188
TaaI	ACNGT	1 cut(s)	254
TaiI	ACGT	1 cut(s)	158
TaqII	GACCGA	1 cut(s)	40
TasI	AATT	4 cut(s)	20, 33, 88, 188
TseI	GCWGC	1 cut(s)	127
TspGWI	ACGGA	1 cut(s)	224
Van91I	CCANNNNNTGG	1 cut(s)	61
VpaK11BI	GGWCC	2 cut(s)	52, 232
XapI	RAATTY	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.