pycom15g38240
TCP Family

cx9C motif-containing protein 4

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
N/A
Physical Location & Seq
Forward (+)
38070721 .. 38070960
240 bp
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UTR
Exon/CDS
Intron
pycom15g38240.1

Sequence Viewer

Length: 240 bp
ATGGGGCGGCAAGAAAGCAAAGAGCCGTGCAAGAAAGAAGCCTGCAACATTCAAGCATGCCTCTCCAAGAACAACTTCCTTCCTCAAAAGTACGTCCGTCCGTCCATCCTCCCTTTCCTCCTCTCCTCTTTATTATTATGTATCACTTGTTTGGTTTCCGAGAAAATATTGTTTGGTTGCCAAGAAAATAGAGGAACATTTCTACCGTCTCCATTCTCTTTCCCAAGAGTGAAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

80

Amino Acids

8.95

Weight (kDa)

9.24

Isoelectric Point (pI)

75.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CMC4 PF08991 9 - 30 2e-06 Cx9C motif-containing protein 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 7
AfaI GTAC 1 cut(s) 92
AgsI TTSAA 1 cut(s) 53
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
Alw26I GTCTC 1 cut(s) 213
Asp700I GAANNNNTTC 1 cut(s) 74
BccI CCATC 1 cut(s) 113
BceAI ACGGC 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 213
BisI GCNGC 1 cut(s) 8
BlsI GCNGC 1 cut(s) 9
BseGI GGATG 1 cut(s) 105
BseRI GAGGAG 2 cut(s) 110, 115
BsmAI GTCTC 1 cut(s) 213
BsmBI CGTCTC 1 cut(s) 213
BspACI CCGC 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 207
BstC8I GCNNGC 2 cut(s) 43, 58
BstF5I GGATG 1 cut(s) 105
BstMAI GTCTC 1 cut(s) 213
BstNSI RCATGY 1 cut(s) 60
BtsCI GGATG 1 cut(s) 105
Cac8I GCNNGC 2 cut(s) 43, 58
Csp6I GTAC 1 cut(s) 91
CviAII CATG 1 cut(s) 57
CviJI RGCY 3 cut(s) 25, 41, 235
CviKI_1 RGCY 3 cut(s) 25, 41, 235
CviQI GTAC 1 cut(s) 91
Esp3I CGTCTC 1 cut(s) 213
FaeI CATG 1 cut(s) 60
FaiI YATR 2 cut(s) 58, 139
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FatI CATG 1 cut(s) 56
Fnu4HI GCNGC 1 cut(s) 8
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 1 cut(s) 8
GluI GCNGC 1 cut(s) 8
Hin1II CATG 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 233
Hpy188I TCNGA 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 89
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 30, 45
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 1 cut(s) 60
LpnPI CCDG 1 cut(s) 55
MaeII ACGT 1 cut(s) 93
MnlI CCTC 7 cut(s) 71, 93, 119, 128, 131, 136, 185
MroXI GAANNNNTTC 1 cut(s) 74
MseI TTAA 1 cut(s) 238
NlaIII CATG 1 cut(s) 60
NspI RCATGY 1 cut(s) 60
PaeI GCATGC 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 74
PkrI GCNGC 1 cut(s) 9
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SaqAI TTAA 1 cut(s) 238
SatI GCNGC 1 cut(s) 8
SetI ASST 2 cut(s) 96, 237
SphI GCATGC 1 cut(s) 60
SsiI CCGC 1 cut(s) 7
SspI AATATT 1 cut(s) 168
TaaI ACNGT 1 cut(s) 207
TaiI ACGT 1 cut(s) 96
TauI GCSGC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 238
Tru9I TTAA 1 cut(s) 238
TspGWI ACGGA 2 cut(s) 86, 90
XceI RCATGY 1 cut(s) 60
XmnI GAANNNNTTC 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.