Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

38498498 .. 38500495

Gene Structure 1998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGACAGATGGGTTGCGATCGGAAAGCTGCACCAAAACTATGGCGGCAATGGCGATCTCTATGAGTCAGAGGAGGCTGGCGACCGAAGATGGCTGTAAAAACAGCGGGCCGAATTCACGTCTTCACTATTTGGAACACGATGATGAAACTCATGGAGTTTACATGCCCCCATTCAAGTTGTCCCGTATGATGAAACAAGTCGAGGATAAGAGAAGCGTTGAGTATCAGCGGTTGACGTGGGACGCCCTCAGAAAGAGTATCAACGGCCTTGTCAACAAGTTGAATGTCACCAACATCAAGTATATAATCCCGGAAATTTTGGCCGAGAATCTGATTCGCGGACGTGGTCTATTCTGCCAATCCTGCATGAAAACGCAGACGGCGTCGCCCTGGTTCACTAATGTGCTTGCAGCATTGGTAGCTGTTGTCAACACAAAGTTTCCTGAGGTTGGTCAGCTTTTATTGGGAAGACTCGTCTTACAATTTCAGAGAGCTTTTGATCTAAAAGACAAGCCTCAGCTACGATTTCAGAGAGCTTTTGATCGAAAAGACAAGCTTCGGCTACTAGCCGCCGCGAAGTTCATAGCGCATCTGGTGAACCAGCAGGTGGCTCACGAGATTATAGCTTTGGAATTGCTCACTTTTCTGTTGGACAATCCTACAGACTTCAAGGTTGAAGTTGCCGTTGTCTTTGTGACTGAATGTGGATCAATGCTTCGGGACCTTTCGCCTAAAGGCCTCTATTTTATCTTTGAGCGCTTTCGTGGAATTCTTTACCAGGGAGACAGAGAGAAGAGTTCTGTATTTGATCGAAAACTTGTTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071006 GO:0071012 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

276

Amino Acids

31.55

Weight (kDa)

9.51

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIF4G	PF02854	85 - 255	5.1e-14	MIF4G domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	595
Acc36I	ACCTGC	1 cut(s)	595
AccB7I	CCANNNNNTGG	1 cut(s)	607
AccII	CGCG	2 cut(s)	339, 575
AciI	CCGC	6 cut(s)	44, 105, 229, 339, 570, 573
AclWI	GGATC	1 cut(s)	715
AcoI	YGGCCR	1 cut(s)	321
AcsI	RAATTY	3 cut(s)	112, 315, 768
AcyI	GRCGYC	2 cut(s)	243, 383
AfeI	AGCGCT	1 cut(s)	758
AfiI	CCNNNNNNNGG	2 cut(s)	449, 607
AgsI	TTSAA	4 cut(s)	175, 283, 670, 677
AjiI	CACGTC	3 cut(s)	119, 237, 344
AjnI	CCWGG	2 cut(s)	389, 777
AleI	CACNNNNGTG	1 cut(s)	401
AluBI	AGCT	8 cut(s)	27, 422, 457, 494, 520, 536, 556, 626
AluI	AGCT	8 cut(s)	27, 422, 457, 494, 520, 536, 556, 626
Alw26I	GTCTC	1 cut(s)	777
AlwI	GGATC	1 cut(s)	715
Aor51HI	AGCGCT	1 cut(s)	758
AoxI	GGCC	4 cut(s)	107, 265, 321, 736
ApeKI	GCWGC	2 cut(s)	27, 410
ApoI	RAATTY	3 cut(s)	112, 315, 768
AspLEI	GCGC	2 cut(s)	589, 759
AspS9I	GGNCC	2 cut(s)	107, 721
AsuC2I	CCSGG	1 cut(s)	311
AsuHPI	GGTGA	2 cut(s)	280, 607
AvaII	GGWCC	1 cut(s)	721
AxyI	CCTNAGG	1 cut(s)	444
BauI	CACGAG	1 cut(s)	614
BbsI	GAAGAC	2 cut(s)	113, 475
BbvCI	CCTCAGC	1 cut(s)	516
BbvI	GCAGC	2 cut(s)	14, 422
BccI	CCATC	2 cut(s)	2, 83
BceAI	ACGGC	3 cut(s)	280, 396, 668
BciT130I	CCWGG	2 cut(s)	391, 779
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	777
BfaI	CTAG	1 cut(s)	566
BfmI	CTRYAG	1 cut(s)	660
BfoI	RGCGCY	1 cut(s)	760
BfuAI	ACCTGC	1 cut(s)	595
BisI	GCNGC	5 cut(s)	28, 45, 411, 570, 573
BlsI	GCNGC	5 cut(s)	29, 46, 412, 571, 574
Bme1390I	CCNGG	3 cut(s)	311, 391, 779
Bme18I	GGWCC	1 cut(s)	721
BmgBI	CACGTC	3 cut(s)	119, 237, 344
BmgT120I	GGNCC	2 cut(s)	107, 721
BmiI	GGNNCC	1 cut(s)	722
BmrFI	CCNGG	3 cut(s)	311, 391, 779
BmsI	GCATC	1 cut(s)	598
BpiI	GAAGAC	2 cut(s)	113, 475
Bpu10I	CCTNAGC	1 cut(s)	516
BpuMI	CCSGG	1 cut(s)	311
BsaHI	GRCGYC	2 cut(s)	243, 383
BsaJI	CCNNGG	2 cut(s)	389, 778
Bsc4I	CCNNNNNNNGG	2 cut(s)	449, 607
Bse21I	CCTNAGG	1 cut(s)	444
Bse3DI	GCAATG	1 cut(s)	54
BseBI	CCWGG	2 cut(s)	391, 779
BseDI	CCNNGG	2 cut(s)	389, 778
BseLI	CCNNNNNNNGG	2 cut(s)	449, 607
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	3 cut(s)	262, 435, 530
BseRI	GAGGAG	1 cut(s)	85
BseXI	GCAGC	2 cut(s)	14, 422
BsgI	GTGCAG	1 cut(s)	13
Bsh1236I	CGCG	2 cut(s)	339, 575
Bsh1285I	CGRYCG	2 cut(s)	20, 84
BshFI	GGCC	4 cut(s)	109, 267, 323, 738
BsiEI	CGRYCG	2 cut(s)	20, 84
BsiSI	CCGG	1 cut(s)	311
BslFI	GGGAC	3 cut(s)	166, 254, 734
BslI	CCNNNNNNNGG	2 cut(s)	449, 607
BsmAI	GTCTC	1 cut(s)	777
BsmFI	GGGAC	3 cut(s)	166, 254, 734
BsnI	GGCC	4 cut(s)	109, 267, 323, 738
Bsp143I	GATC	6 cut(s)	17, 54, 499, 541, 707, 808
BspACI	CCGC	6 cut(s)	44, 105, 229, 339, 570, 573
BspANI	GGCC	4 cut(s)	109, 267, 323, 738
BspCNI	CTCAG	3 cut(s)	261, 436, 529
BspFNI	CGCG	2 cut(s)	339, 575
BspLI	GGNNCC	1 cut(s)	722
BspMI	ACCTGC	1 cut(s)	595
BspPI	GGATC	1 cut(s)	715
BsrDI	GCAATG	1 cut(s)	54
BssECI	CCNNGG	2 cut(s)	389, 778
BssMI	GATC	6 cut(s)	17, 54, 499, 541, 707, 808
BssNI	GRCGYC	2 cut(s)	243, 383
BssSI	CACGAG	1 cut(s)	614
Bst2BI	CACGAG	1 cut(s)	614
Bst2UI	CCWGG	2 cut(s)	391, 779
Bst6I	CTCTTC	1 cut(s)	788
BstACI	GRCGYC	2 cut(s)	243, 383
BstC8I	GCNNGC	3 cut(s)	78, 107, 408
BstDEI	CTNAG	3 cut(s)	248, 444, 516
BstFNI	CGCG	2 cut(s)	339, 575
BstH2I	RGCGCY	1 cut(s)	760
BstHHI	GCGC	2 cut(s)	589, 759
BstKTI	GATC	6 cut(s)	20, 57, 502, 544, 710, 811
BstMAI	GTCTC	1 cut(s)	777
BstMBI	GATC	6 cut(s)	17, 54, 499, 541, 707, 808
BstMCI	CGRYCG	2 cut(s)	20, 84
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 363, 419
BstNI	CCWGG	2 cut(s)	391, 779
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	3 cut(s)	309, 389, 777
BstSFI	CTRYAG	1 cut(s)	660
BstUI	CGCG	2 cut(s)	339, 575
BstV1I	GCAGC	2 cut(s)	14, 422
BstV2I	GAAGAC	2 cut(s)	113, 475
BstXI	CCANNNNNNTGG	1 cut(s)	40
Bsu36I	CCTNAGG	1 cut(s)	444
BsuRI	GGCC	4 cut(s)	109, 267, 323, 738
BtrI	CACGTC	3 cut(s)	119, 237, 344
BveI	ACCTGC	1 cut(s)	595
Cac8I	GCNNGC	3 cut(s)	78, 107, 408
CfoI	GCGC	2 cut(s)	589, 759
Cfr13I	GGNCC	2 cut(s)	107, 721
CseI	GACGC	2 cut(s)	251, 372
CviAII	CATG	3 cut(s)	152, 163, 367
DdeI	CTNAG	3 cut(s)	248, 444, 516
DpnI	GATC	6 cut(s)	19, 56, 501, 543, 709, 810
DpnII	GATC	6 cut(s)	17, 54, 499, 541, 707, 808
EaeI	YGGCCR	1 cut(s)	321
Eam1104I	CTCTTC	1 cut(s)	788
EarI	CTCTTC	1 cut(s)	788
Eco147I	AGGCCT	1 cut(s)	738
Eco47I	GGWCC	1 cut(s)	721
Eco47III	AGCGCT	1 cut(s)	758
Eco81I	CCTNAGG	1 cut(s)	444
EcoO109I	RGGNCCY	1 cut(s)	721
EcoRI	GAATTC	2 cut(s)	112, 768
EcoRII	CCWGG	2 cut(s)	389, 777
FaeI	CATG	3 cut(s)	155, 166, 370
FalI	AAGNNNNNCTT	2 cut(s)	540, 572
FaqI	GGGAC	3 cut(s)	166, 254, 734
FatI	CATG	3 cut(s)	151, 162, 366
FauI	CCCGC	1 cut(s)	98
Fnu4HI	GCNGC	5 cut(s)	28, 45, 411, 570, 573
Fsp4HI	GCNGC	5 cut(s)	28, 45, 411, 570, 573
FspBI	CTAG	1 cut(s)	566
GlaI	GCGC	2 cut(s)	588, 758
GluI	GCNGC	5 cut(s)	28, 45, 411, 570, 573
HaeII	RGCGCY	1 cut(s)	760
HaeIII	GGCC	4 cut(s)	109, 267, 323, 738
HapII	CCGG	1 cut(s)	311
HgaI	GACGC	2 cut(s)	251, 372
HhaI	GCGC	2 cut(s)	589, 759
Hin1I	GRCGYC	2 cut(s)	243, 383
Hin1II	CATG	3 cut(s)	155, 166, 370
Hin6I	GCGC	2 cut(s)	587, 757
HinP1I	GCGC	2 cut(s)	587, 757
HincII	GTYRAC	3 cut(s)	234, 274, 430
HindII	GTYRAC	3 cut(s)	234, 274, 430
HindIII	AAGCTT	1 cut(s)	554
HinfI	GANTC	4 cut(s)	64, 328, 334, 471
HpaII	CCGG	1 cut(s)	311
HphI	GGTGA	2 cut(s)	280, 607
Hpy166II	GTNNAC	6 cut(s)	160, 234, 274, 396, 430, 598
Hpy188I	TCNGA	6 cut(s)	22, 69, 251, 333, 489, 531
Hpy188III	TCNNGA	3 cut(s)	443, 614, 719
Hpy8I	GTNNAC	6 cut(s)	160, 234, 274, 396, 430, 598
Hpy99I	CGWCG	1 cut(s)	388
HpyCH4IV	ACGT	3 cut(s)	118, 236, 343
HpyCH4V	TGCA	3 cut(s)	30, 366, 410
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 363, 419
HpyF3I	CTNAG	3 cut(s)	248, 444, 516
HpySE526I	ACGT	3 cut(s)	118, 236, 343
Hsp92I	GRCGYC	2 cut(s)	243, 383
Hsp92II	CATG	3 cut(s)	155, 166, 370
HspAI	GCGC	2 cut(s)	587, 757
Kzo9I	GATC	6 cut(s)	17, 54, 499, 541, 707, 808
Lsp1109I	GCAGC	2 cut(s)	14, 422
LweI	GCATC	1 cut(s)	598
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	3 cut(s)	118, 236, 343
MaeIII	GTNAC	2 cut(s)	286, 694
MalI	GATC	6 cut(s)	19, 56, 501, 543, 709, 810
MboI	GATC	6 cut(s)	17, 54, 499, 541, 707, 808
MboII	GAAGA	4 cut(s)	98, 113, 480, 805
MluCI	AATT	5 cut(s)	112, 315, 482, 632, 768
MlyI	GAGTC	2 cut(s)	73, 465
MmeI	TCCRAC	1 cut(s)	630
MnlI	CCTC	7 cut(s)	63, 66, 196, 257, 439, 525, 749
MslI	CAYNNNNRTG	2 cut(s)	141, 401
MspA1I	CMGCKG	2 cut(s)	105, 229
MspI	CCGG	1 cut(s)	311
MspR9I	CCNGG	3 cut(s)	311, 391, 779
MvaI	CCWGG	2 cut(s)	391, 779
MvnI	CGCG	2 cut(s)	339, 575
MwoI	GCNNNNNNNGC	3 cut(s)	50, 363, 419
NciI	CCSGG	1 cut(s)	311
NdeII	GATC	6 cut(s)	17, 54, 499, 541, 707, 808
NlaIII	CATG	3 cut(s)	155, 166, 370
NlaIV	GGNNCC	1 cut(s)	722
NmeAIII	GCCGAG	1 cut(s)	349
NmuCI	GTSAC	2 cut(s)	286, 694
NspI	RCATGY	1 cut(s)	166
OliI	CACNNNNGTG	1 cut(s)	401
PaqCI	CACCTGC	1 cut(s)	595
PceI	AGGCCT	1 cut(s)	738
PcsI	WCGNNNNNNNCGW	1 cut(s)	380
PfeI	GAWTC	2 cut(s)	328, 334
PflFI	GACNNNGTC	2 cut(s)	345, 382
PflMI	CCANNNNNTGG	1 cut(s)	607
PfoI	TCCNGGA	1 cut(s)	309
PkrI	GCNGC	5 cut(s)	29, 46, 412, 571, 574
Ple19I	CGATCG	1 cut(s)	20
PleI	GAGTC	2 cut(s)	72, 465
PpsI	GAGTC	2 cut(s)	72, 465
PpuMI	RGGWCCY	1 cut(s)	721
Psp5II	RGGWCCY	1 cut(s)	721
Psp6I	CCWGG	2 cut(s)	389, 777
PspGI	CCWGG	2 cut(s)	389, 777
PspN4I	GGNNCC	1 cut(s)	722
PspPI	GGNCC	2 cut(s)	107, 721
PspPPI	RGGWCCY	1 cut(s)	721
PsyI	GACNNNGTC	2 cut(s)	345, 382
PvuI	CGATCG	1 cut(s)	20
RseI	CAYNNNNRTG	2 cut(s)	141, 401
SatI	GCNGC	5 cut(s)	28, 45, 411, 570, 573
Sau3AI	GATC	6 cut(s)	17, 54, 499, 541, 707, 808
Sau96I	GGNCC	2 cut(s)	107, 721
SchI	GAGTC	2 cut(s)	73, 465
ScrFI	CCNGG	3 cut(s)	311, 391, 779
SfaNI	GCATC	1 cut(s)	598
SfcI	CTRYAG	1 cut(s)	660
SinI	GGWCC	1 cut(s)	721
SmiMI	CAYNNNNRTG	2 cut(s)	141, 401
Sse9I	AATT	5 cut(s)	112, 315, 482, 632, 768
SseBI	AGGCCT	1 cut(s)	738
SsiI	CCGC	6 cut(s)	44, 105, 229, 339, 570, 573
SspMI	CTAG	1 cut(s)	566
StuI	AGGCCT	1 cut(s)	738
StyD4I	CCNGG	3 cut(s)	309, 389, 777
TaiI	ACGT	3 cut(s)	121, 239, 346
TaqI	TCGA	3 cut(s)	201, 544, 811
TaqII	GACCGA	1 cut(s)	98
TasI	AATT	5 cut(s)	112, 315, 482, 632, 768
TauI	GCSGC	3 cut(s)	47, 572, 575
TfiI	GAWTC	2 cut(s)	328, 334
TseFI	GTSAC	2 cut(s)	286, 694
TseI	GCWGC	2 cut(s)	27, 410
Tsp45I	GTSAC	2 cut(s)	286, 694
TspDTI	ATGAA	4 cut(s)	159, 206, 383, 571
Tth111I	GACNNNGTC	2 cut(s)	345, 382
Van91I	CCANNNNNTGG	1 cut(s)	607
VpaK11BI	GGWCC	1 cut(s)	721
XapI	RAATTY	3 cut(s)	112, 315, 768
XceI	RCATGY	1 cut(s)	166
XspI	CTAG	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.