Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

38621550 .. 38622780

Gene Structure 1231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGAGAAGATGGGTTGCCGGCTTCATCCTCAGACATATTCAATGTTGATTGAGGGAATCGATAGTCTCTGTGAGCACTACTGCAAGCAAAGTGATTTTAAACCTTATATTCCCAGAGATCTGGTAAGCACTGTGAATTGTGAATACAGAGTTTGTAGTCTTTATTTGCGCTGTGAATGTACCGTCTCTTCAGTGAGCGCATATATGTTTCTCTGGGACGAGGACCTCAGCATTGAGGATTTTGACTCAAAATGGACGATCTCAGCTTTGGCGCTGATGTTCGATGTTGTTCACTCTTCATTCCATGTATTCGTTTGCACAAGATGCTGGTCCTGTATTGCAATGAAGATCGCGTGCGGTAAAAGGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

124

Amino Acids

14.23

Weight (kDa)

5.74

Isoelectric Point (pI)

58.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	353
AciI	CCGC	1 cut(s)	357
AcuI	CTGAAG	1 cut(s)	174
AfaI	GTAC	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	42
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	2 cut(s)	71, 190
AspLEI	GCGC	3 cut(s)	171, 200, 274
AspS9I	GGNCC	2 cut(s)	223, 330
AvaII	GGWCC	2 cut(s)	223, 330
BarI	GAAGNNNNNNTAC	2 cut(s)	172, 204
Bbv12I	GWGCWC	1 cut(s)	78
BbvCI	CCTCAGC	1 cut(s)	227
BccI	CCATC	1 cut(s)	4
BcoDI	GTCTC	2 cut(s)	71, 190
BfoI	RGCGCY	1 cut(s)	275
BglII	AGATCT	1 cut(s)	118
Bme18I	GGWCC	2 cut(s)	223, 330
BmgT120I	GGNCC	2 cut(s)	223, 330
BmsI	GCATC	1 cut(s)	314
Bpu10I	CCTNAGC	1 cut(s)	227
Bsa29I	ATCGAT	1 cut(s)	60
Bse118I	RCCGGY	1 cut(s)	18
Bse3DI	GCAATG	1 cut(s)	348
BseCI	ATCGAT	1 cut(s)	60
BseGI	GGATG	1 cut(s)	25
BseMI	GCAATG	1 cut(s)	348
BseMII	CTCAG	3 cut(s)	44, 241, 276
Bsh1236I	CGCG	1 cut(s)	353
BshVI	ATCGAT	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	19
BslFI	GGGAC	1 cut(s)	230
BsmAI	GTCTC	2 cut(s)	71, 190
BsmBI	CGTCTC	1 cut(s)	190
BsmFI	GGGAC	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	3 cut(s)	118, 258, 348
BspACI	CCGC	1 cut(s)	357
BspCNI	CTCAG	3 cut(s)	43, 240, 275
BspDI	ATCGAT	1 cut(s)	60
BspFNI	CGCG	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	348
BsrFI	RCCGGY	1 cut(s)	18
BssAI	RCCGGY	1 cut(s)	18
BssMI	GATC	3 cut(s)	118, 258, 348
Bst4CI	ACNGT	2 cut(s)	133, 184
Bst6I	CTCTTC	2 cut(s)	193, 301
BstAPI	GCANNNNNTGC	1 cut(s)	324
BstC8I	GCNNGC	3 cut(s)	20, 86, 355
BstDEI	CTNAG	3 cut(s)	30, 227, 262
BstF5I	GGATG	1 cut(s)	25
BstFNI	CGCG	1 cut(s)	353
BstH2I	RGCGCY	1 cut(s)	275
BstHHI	GCGC	3 cut(s)	171, 200, 274
BstKTI	GATC	3 cut(s)	121, 261, 351
BstMAI	GTCTC	2 cut(s)	71, 190
BstMBI	GATC	3 cut(s)	118, 258, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	324
BstUI	CGCG	1 cut(s)	353
BstX2I	RGATCY	1 cut(s)	118
BstXI	CCANNNNNNTGG	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	118
Bsu15I	ATCGAT	1 cut(s)	60
BsuTUI	ATCGAT	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	25
BtsIMutI	CAGTG	2 cut(s)	129, 198
Cac8I	GCNNGC	3 cut(s)	20, 86, 355
CfoI	GCGC	3 cut(s)	171, 200, 274
Cfr10I	RCCGGY	1 cut(s)	18
Cfr13I	GGNCC	2 cut(s)	223, 330
ClaI	ATCGAT	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	1 cut(s)	305
CviJI	RGCY	2 cut(s)	22, 266
CviKI_1	RGCY	2 cut(s)	22, 266
CviQI	GTAC	1 cut(s)	180
DdeI	CTNAG	3 cut(s)	30, 227, 262
DpnI	GATC	3 cut(s)	120, 260, 350
DpnII	GATC	3 cut(s)	118, 258, 348
DraI	TTTAAA	1 cut(s)	100
Eam1104I	CTCTTC	2 cut(s)	193, 301
EarI	CTCTTC	2 cut(s)	193, 301
Eco47I	GGWCC	2 cut(s)	223, 330
Eco57I	CTGAAG	1 cut(s)	174
EcoO109I	RGGNCCY	1 cut(s)	223
Esp3I	CGTCTC	1 cut(s)	190
FaeI	CATG	1 cut(s)	308
FaiI	YATR	6 cut(s)	37, 108, 202, 204, 206, 306
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	1 cut(s)	304
FokI	GGATG	1 cut(s)	12
GlaI	GCGC	3 cut(s)	170, 199, 273
HaeII	RGCGCY	1 cut(s)	275
HapII	CCGG	1 cut(s)	19
HhaI	GCGC	3 cut(s)	171, 200, 274
Hin1II	CATG	1 cut(s)	308
Hin6I	GCGC	3 cut(s)	169, 198, 272
HinP1I	GCGC	3 cut(s)	169, 198, 272
HinfI	GANTC	2 cut(s)	57, 245
HpaII	CCGG	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	1 cut(s)	33
Hpy8I	GTNNAC	1 cut(s)	292
HpyCH4III	ACNGT	2 cut(s)	133, 184
HpyCH4V	TGCA	3 cut(s)	84, 318, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	324
HpyF3I	CTNAG	3 cut(s)	30, 227, 262
Hsp92II	CATG	1 cut(s)	308
HspAI	GCGC	3 cut(s)	169, 198, 272
KroI	GCCGGC	1 cut(s)	18
KroNI	GCCGGC	1 cut(s)	20
Kzo9I	GATC	3 cut(s)	118, 258, 348
LpnPI	CCDG	6 cut(s)	32, 107, 127, 199, 313, 346
LweI	GCATC	1 cut(s)	314
MalI	GATC	3 cut(s)	120, 260, 350
MboI	GATC	3 cut(s)	118, 258, 348
MboII	GAAGA	4 cut(s)	19, 180, 288, 358
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	1 cut(s)	136
MlyI	GAGTC	1 cut(s)	239
MnlI	CCTC	5 cut(s)	39, 46, 214, 229, 236
MroNI	GCCGGC	1 cut(s)	18
MseI	TTAA	1 cut(s)	99
MspI	CCGG	1 cut(s)	19
MvnI	CGCG	1 cut(s)	353
MwoI	GCNNNNNNNGC	1 cut(s)	324
NaeI	GCCGGC	1 cut(s)	20
NdeII	GATC	3 cut(s)	118, 258, 348
NgoMIV	GCCGGC	1 cut(s)	18
NlaIII	CATG	1 cut(s)	308
PdiI	GCCGGC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	57
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
PpuMI	RGGWCCY	1 cut(s)	223
Psp5II	RGGWCCY	1 cut(s)	223
PspPI	GGNCC	2 cut(s)	223, 330
PspPPI	RGGWCCY	1 cut(s)	223
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	99
Sau3AI	GATC	3 cut(s)	118, 258, 348
Sau96I	GGNCC	2 cut(s)	223, 330
SchI	GAGTC	1 cut(s)	239
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	3 cut(s)	106, 228, 268
SfaNI	GCATC	1 cut(s)	314
SinI	GGWCC	2 cut(s)	223, 330
Sse9I	AATT	1 cut(s)	136
SsiI	CCGC	1 cut(s)	357
TaaI	ACNGT	2 cut(s)	133, 184
TaqI	TCGA	2 cut(s)	60, 282
TasI	AATT	1 cut(s)	136
TfiI	GAWTC	1 cut(s)	57
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	2 cut(s)	136, 198
TspDTI	ATGAA	3 cut(s)	14, 288, 359
TspRI	CASTG	2 cut(s)	136, 198
VpaK11BI	GGWCC	2 cut(s)	223, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.