Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

38718106 .. 38720681

Gene Structure 2576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGCAATGCTCTTATTGCCTCTCCAAAGGTTCAGATGATTCGAAGTTGGTTGGATTTAACAAAAAGAAGGGTAAAACTCCAAAGTACTGCTTACCATTTCTGAAACCTGGCAGGCTTGTCTCAATCCAATGTGCTAAAAGTGATGAAAGTTCTTCTTTTTCCTTTGACGACCCAGTCACATGGGGAGTGATACTTAATTTTCAACGGGTGAAAACTGTTTCAGAAGATGATGCAAGTAGAAAACCCGAAGATGCAAACTACACGGTGGATGTTCTGACAAGATGTGGGGTGAGTCCAAGTGAAGTTGCAAAGAAAACCATCAAAATTATCCCTCTGAAAGAGCCAGGAGAACCTGCTGTTGTCTCCATTTCCATATCTCAGATAAATTGTATGAGTGAACTTTGTCTGGTCGTTCCTAAGGATCTTTTGCCACTACCAGCTCAAGAAAACACACTGAAGAGAGTTGTTGAAACTCTGTCAAGATTTGATAAAGGAAAGATTCCTTTACTCGATCCCGAAGAAGATATGAAGATTGAAAGTAGTTCGTACAAAAAGGTGTCTCGTAGGATGGAGGCTTTAGAGAACCTGTTTGACAGGCATGAAGTTGCAAGAACTCCACTTATAGAGCAAAAGCTCAAGGTTTTTCATATGAAGCAGGATTTGGCCGCCAAGATCAAATCAATTAAGAAAACAATGTGCTCTTCCACTGCATTGGCTTTTAAAGATGAACTGAAGGCAAGAAAACGGGTCCTTCGGAGGCTAGGATATGTTACGAAGGATGATGTTGTGGAATTGAAGGGTAAAGTTGCTTGTGAAATCAGTAGTGCAGAGGAGTTGACCCTGACTGAGCTCATGTTCAATGGGGCTTTCAAGGACATAGAAGTGGAAGAGATGGTTTCTCTTCTCTCATGTTTTGTGTGGCAGGAGAAGGTTAAGGAAGCTATAAAACCAAGGGAAGAGCTTGACCTGCTATTTTCACAATTACAAGATACAGCTCGGAGGGTCGCTGATGTTCAGCTTGAGTGCAAGGTCGAAATTGATGTTGACAGCTTTGTGGGTTCATCTCGGCCTGATATTATGGAGGCTGTGTATGCATGGGCGGAAGGGTCCAAACTCTACGAGATCATGTCAGCTACACCTGTCTTGGAAGGCAGTTTGATCAGGGCAATTAGGAGATTAGAGGAGGTCCTTCAGCAACTTATACAAGCTGCTAAGTCTGTTGGGGAAACTGAGCTTGAATCAAAATTCGAGGAGGCTGTTTCGAATATCAAGAGGGACATTGTCTTTGCAGCTTCCCTATACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000460 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C rRNA_proc-arch

Protein Analysis

436

Amino Acids

48.9

Weight (kDa)

6.07

Isoelectric Point (pI)

47.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTR4_beta-barrel	PF13234	27 - 232	6.7e-48	Mtr4-like, beta-barrel domain
DSHCT	PF08148	260 - 430	1.4e-53	DSHCT (NUC185) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	173
Acc36I	ACCTGC	2 cut(s)	361, 975
AciI	CCGC	2 cut(s)	666, 1100
AclWI	GGATC	2 cut(s)	429, 506
AcoI	YGGCCR	1 cut(s)	663
AcsI	RAATTY	1 cut(s)	1244
AcuI	CTGAAG	3 cut(s)	476, 752, 1175
AfaI	GTAC	2 cut(s)	86, 548
AgsI	TTSAA	7 cut(s)	203, 470, 536, 796, 859, 871, 1238
AjnI	CCWGG	2 cut(s)	106, 343
AjuI	GAANNNNNNNTTGG	2 cut(s)	644, 676
Alw21I	GWGCWC	2 cut(s)	701, 852
Alw26I	GTCTC	3 cut(s)	124, 367, 564
AlwI	GGATC	2 cut(s)	429, 506
AoxI	GGCC	2 cut(s)	663, 1067
ApeKI	GCWGC	2 cut(s)	1208, 1289
ApoI	RAATTY	1 cut(s)	1244
ArsI	GACNNNNNNTTYG	2 cut(s)	1268, 1300
AspS9I	GGNCC	3 cut(s)	748, 1107, 1186
AsuHPI	GGTGA	2 cut(s)	220, 301
AsuII	TTCGAA	2 cut(s)	41, 1262
AvaII	GGWCC	3 cut(s)	748, 1107, 1186
AxyI	CCTNAGG	1 cut(s)	417
BanII	GRGCYC	1 cut(s)	852
Bbv12I	GWGCWC	2 cut(s)	701, 852
BbvI	GCAGC	2 cut(s)	1195, 1301
BccI	CCATC	3 cut(s)	326, 562, 886
BciT130I	CCWGG	2 cut(s)	108, 345
BclI	TGATCA	1 cut(s)	1158
BcoDI	GTCTC	3 cut(s)	124, 367, 564
BfaI	CTAG	1 cut(s)	761
BfuAI	ACCTGC	2 cut(s)	361, 975
BisI	GCNGC	3 cut(s)	666, 1209, 1290
BlsI	GCNGC	3 cut(s)	667, 1210, 1291
BmcAI	AGTACT	1 cut(s)	86
Bme1390I	CCNGG	2 cut(s)	108, 345
Bme18I	GGWCC	3 cut(s)	748, 1107, 1186
BmgT120I	GGNCC	3 cut(s)	748, 1107, 1186
BmiI	GGNNCC	2 cut(s)	749, 1108
BmrFI	CCNGG	2 cut(s)	108, 345
BmrI	ACTGGG	1 cut(s)	167
BmsI	GCATC	2 cut(s)	220, 241
BmuI	ACTGGG	1 cut(s)	167
Bpu14I	TTCGAA	2 cut(s)	41, 1262
BpuEI	CTTGAG	3 cut(s)	426, 620, 1040
BsaJI	CCNNGG	1 cut(s)	950
BsaXI	ACNNNNNCTCC	2 cut(s)	1073, 1103
Bse1I	ACTGG	1 cut(s)	173
Bse21I	CCTNAGG	1 cut(s)	417
Bse3DI	GCAATG	1 cut(s)	11
BseBI	CCWGG	2 cut(s)	108, 345
BseDI	CCNNGG	1 cut(s)	950
BseGI	GGATG	3 cut(s)	274, 573, 784
BseMI	GCAATG	1 cut(s)	11
BseMII	CTCAG	3 cut(s)	392, 837, 1221
BseNI	ACTGG	1 cut(s)	173
BseRI	GAGGAG	3 cut(s)	845, 1196, 1265
BseXI	GCAGC	2 cut(s)	1195, 1301
BsgI	GTGCAG	1 cut(s)	846
BshFI	GGCC	2 cut(s)	665, 1069
BsiHKAI	GWGCWC	2 cut(s)	701, 852
BslFI	GGGAC	1 cut(s)	1289
BsmAI	GTCTC	3 cut(s)	124, 367, 564
BsmFI	GGGAC	1 cut(s)	1289
BsnI	GGCC	2 cut(s)	665, 1069
Bsp119I	TTCGAA	2 cut(s)	41, 1262
Bsp1286I	GDGCHC	2 cut(s)	701, 852
Bsp143I	GATC	5 cut(s)	421, 511, 672, 1122, 1158
BspACI	CCGC	2 cut(s)	666, 1100
BspANI	GGCC	2 cut(s)	665, 1069
BspCNI	CTCAG	3 cut(s)	391, 838, 1222
BspLI	GGNNCC	2 cut(s)	749, 1108
BspMI	ACCTGC	2 cut(s)	361, 975
BspPI	GGATC	2 cut(s)	429, 506
BspQI	GCTCTTC	2 cut(s)	706, 951
BspT104I	TTCGAA	2 cut(s)	41, 1262
BsrDI	GCAATG	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	950
BssMI	GATC	5 cut(s)	421, 511, 672, 1122, 1158
BssT1I	CCWWGG	1 cut(s)	950
Bst2UI	CCWGG	2 cut(s)	108, 345
Bst4CI	ACNGT	2 cut(s)	217, 265
Bst6I	CTCTTC	5 cut(s)	452, 706, 882, 906, 951
BstBI	TTCGAA	2 cut(s)	41, 1262
BstC8I	GCNNGC	1 cut(s)	113
BstDEI	CTNAG	5 cut(s)	378, 417, 846, 1212, 1230
BstF5I	GGATG	3 cut(s)	274, 573, 784
BstKTI	GATC	5 cut(s)	424, 514, 675, 1125, 1161
BstMAI	GTCTC	3 cut(s)	124, 367, 564
BstMBI	GATC	5 cut(s)	421, 511, 672, 1122, 1158
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 967, 1091
BstNI	CCWGG	2 cut(s)	108, 345
BstSCI	CCNGG	2 cut(s)	106, 343
BstV1I	GCAGC	2 cut(s)	1195, 1301
BstX2I	RGATCY	1 cut(s)	421
BstXI	CCANNNNNNTGG	2 cut(s)	180, 712
BstYI	RGATCY	1 cut(s)	421
Bsu36I	CCTNAGG	1 cut(s)	417
BsuRI	GGCC	2 cut(s)	665, 1069
BtsCI	GGATG	3 cut(s)	274, 573, 784
BtsI	GCAGTG	1 cut(s)	705
BtsIMutI	CAGTG	2 cut(s)	452, 705
BveI	ACCTGC	2 cut(s)	361, 975
Cac8I	GCNNGC	1 cut(s)	113
Cfr13I	GGNCC	3 cut(s)	748, 1107, 1186
Csp6I	GTAC	2 cut(s)	85, 547
CviAII	CATG	6 cut(s)	180, 599, 853, 909, 1095, 1126
CviQI	GTAC	2 cut(s)	85, 547
DdeI	CTNAG	5 cut(s)	378, 417, 846, 1212, 1230
DpnI	GATC	5 cut(s)	423, 513, 674, 1124, 1160
DpnII	GATC	5 cut(s)	421, 511, 672, 1122, 1158
DraI	TTTAAA	1 cut(s)	721
DrdI	GACNNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	173
EaeI	YGGCCR	1 cut(s)	663
Eam1104I	CTCTTC	5 cut(s)	452, 706, 882, 906, 951
EarI	CTCTTC	5 cut(s)	452, 706, 882, 906, 951
EciI	GGCGGA	1 cut(s)	1115
Ecl136II	GAGCTC	1 cut(s)	850
Eco130I	CCWWGG	1 cut(s)	950
Eco24I	GRGCYC	1 cut(s)	852
Eco47I	GGWCC	3 cut(s)	748, 1107, 1186
Eco53kI	GAGCTC	1 cut(s)	850
Eco57I	CTGAAG	3 cut(s)	476, 752, 1175
Eco81I	CCTNAGG	1 cut(s)	417
EcoICRI	GAGCTC	1 cut(s)	850
EcoO109I	RGGNCCY	2 cut(s)	748, 1186
EcoRII	CCWGG	2 cut(s)	106, 343
EcoT14I	CCWWGG	1 cut(s)	950
EcoT22I	ATGCAT	1 cut(s)	1096
EcoT38I	GRGCYC	1 cut(s)	852
ErhI	CCWWGG	1 cut(s)	950
FaeI	CATG	6 cut(s)	183, 602, 856, 912, 1098, 1129
FalI	AAGNNNNNCTT	4 cut(s)	74, 106, 139, 171
FaqI	GGGAC	1 cut(s)	1289
FatI	CATG	6 cut(s)	179, 598, 852, 908, 1094, 1125
FauNDI	CATATG	1 cut(s)	648
FbaI	TGATCA	1 cut(s)	1158
Fnu4HI	GCNGC	3 cut(s)	666, 1209, 1290
FokI	GGATG	3 cut(s)	281, 580, 791
FriOI	GRGCYC	1 cut(s)	852
Fsp4HI	GCNGC	3 cut(s)	666, 1209, 1290
FspBI	CTAG	1 cut(s)	761
GluI	GCNGC	3 cut(s)	666, 1209, 1290
HaeIII	GGCC	2 cut(s)	665, 1069
Hin1II	CATG	6 cut(s)	183, 602, 856, 912, 1098, 1129
HincII	GTYRAC	2 cut(s)	837, 1045
HindII	GTYRAC	2 cut(s)	837, 1045
HinfI	GANTC	4 cut(s)	38, 292, 499, 1238
HphI	GGTGA	2 cut(s)	220, 301
Hpy166II	GTNNAC	3 cut(s)	398, 837, 1045
Hpy188I	TCNGA	8 cut(s)	34, 102, 223, 276, 336, 381, 756, 999
Hpy188III	TCNNGA	4 cut(s)	443, 480, 515, 1270
Hpy8I	GTNNAC	3 cut(s)	398, 837, 1045
HpyAV	CCTTC	9 cut(s)	61, 727, 761, 769, 790, 922, 1097, 1142, 1199
HpyCH4III	ACNGT	2 cut(s)	217, 265
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 967, 1091
HpyF3I	CTNAG	5 cut(s)	378, 417, 846, 1212, 1230
Hsp92II	CATG	6 cut(s)	183, 602, 856, 912, 1098, 1129
Ksp22I	TGATCA	1 cut(s)	1158
Kzo9I	GATC	5 cut(s)	421, 511, 672, 1122, 1158
LguI	GCTCTTC	2 cut(s)	706, 951
Lsp1109I	GCAGC	2 cut(s)	1195, 1301
LweI	GCATC	2 cut(s)	220, 241
MaeI	CTAG	1 cut(s)	761
MaeIII	GTNAC	2 cut(s)	175, 769
MalI	GATC	5 cut(s)	423, 513, 674, 1124, 1160
MboI	GATC	5 cut(s)	421, 511, 672, 1122, 1158
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	2 cut(s)	701, 852
MluCI	AATT	9 cut(s)	196, 324, 385, 681, 791, 980, 1035, 1167, 1244
MlyI	GAGTC	1 cut(s)	301
MmeI	TCCRAC	1 cut(s)	31
Mph1103I	ATGCAT	1 cut(s)	1096
MseI	TTAA	5 cut(s)	57, 195, 684, 720, 933
MslI	CAYNNNNRTG	1 cut(s)	881
MspR9I	CCNGG	2 cut(s)	108, 345
MvaI	CCWGG	2 cut(s)	108, 345
MwoI	GCNNNNNNNGC	3 cut(s)	15, 967, 1091
NdeI	CATATG	1 cut(s)	648
NdeII	GATC	5 cut(s)	421, 511, 672, 1122, 1158
NlaIII	CATG	6 cut(s)	183, 602, 856, 912, 1098, 1129
NlaIV	GGNNCC	2 cut(s)	749, 1108
NmeAIII	GCCGAG	1 cut(s)	1045
NmuCI	GTSAC	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	1096
NspV	TTCGAA	2 cut(s)	41, 1262
PciSI	GCTCTTC	2 cut(s)	706, 951
PfeI	GAWTC	3 cut(s)	38, 499, 1238
PflFI	GACNNNGTC	2 cut(s)	173, 1280
PkrI	GCNGC	3 cut(s)	667, 1210, 1291
PleI	GAGTC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	300
PpuMI	RGGWCCY	2 cut(s)	748, 1186
Psp124BI	GAGCTC	1 cut(s)	852
Psp5II	RGGWCCY	2 cut(s)	748, 1186
Psp6I	CCWGG	2 cut(s)	106, 343
PspGI	CCWGG	2 cut(s)	106, 343
PspN4I	GGNNCC	2 cut(s)	749, 1108
PspPI	GGNCC	3 cut(s)	748, 1107, 1186
PspPPI	RGGWCCY	2 cut(s)	748, 1186
PsuI	RGATCY	1 cut(s)	421
PsyI	GACNNNGTC	2 cut(s)	173, 1280
RsaI	GTAC	2 cut(s)	86, 548
RsaNI	GTAC	2 cut(s)	85, 547
RseI	CAYNNNNRTG	1 cut(s)	881
SacI	GAGCTC	1 cut(s)	852
SapI	GCTCTTC	2 cut(s)	706, 951
SaqAI	TTAA	5 cut(s)	57, 195, 684, 720, 933
SatI	GCNGC	3 cut(s)	666, 1209, 1290
Sau3AI	GATC	5 cut(s)	421, 511, 672, 1122, 1158
Sau96I	GGNCC	3 cut(s)	748, 1107, 1186
ScaI	AGTACT	1 cut(s)	86
SchI	GAGTC	1 cut(s)	301
ScrFI	CCNGG	2 cut(s)	108, 345
SduI	GDGCHC	2 cut(s)	701, 852
SfaNI	GCATC	2 cut(s)	220, 241
SfuI	TTCGAA	2 cut(s)	41, 1262
SinI	GGWCC	3 cut(s)	748, 1107, 1186
SmiMI	CAYNNNNRTG	1 cut(s)	881
SmlI	CTYRAG	3 cut(s)	441, 635, 1019
SmoI	CTYRAG	3 cut(s)	441, 635, 1019
Sse9I	AATT	9 cut(s)	196, 324, 385, 681, 791, 980, 1035, 1167, 1244
SsiI	CCGC	2 cut(s)	666, 1100
SspMI	CTAG	1 cut(s)	761
SstI	GAGCTC	1 cut(s)	852
StyD4I	CCNGG	2 cut(s)	106, 343
StyI	CCWWGG	1 cut(s)	950
TaaI	ACNGT	2 cut(s)	217, 265
TaqI	TCGA	5 cut(s)	41, 510, 1032, 1248, 1262
TasI	AATT	9 cut(s)	196, 324, 385, 681, 791, 980, 1035, 1167, 1244
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	1 cut(s)	668
TfiI	GAWTC	3 cut(s)	38, 499, 1238
Tru1I	TTAA	5 cut(s)	57, 195, 684, 720, 933
Tru9I	TTAA	5 cut(s)	57, 195, 684, 720, 933
TscAI	CASTG	2 cut(s)	459, 712
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	2 cut(s)	1208, 1289
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	7 cut(s)	159, 542, 615, 635, 665, 741, 1050
TspRI	CASTG	2 cut(s)	459, 712
Tth111I	GACNNNGTC	2 cut(s)	173, 1280
VpaK11BI	GGWCC	3 cut(s)	748, 1107, 1186
XapI	RAATTY	1 cut(s)	1244
XspI	CTAG	1 cut(s)	761
ZrmI	AGTACT	1 cut(s)	86
Zsp2I	ATGCAT	1 cut(s)	1096

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.