pycom16g00220

prefoldin subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
N/A
Physical Location & Seq
Reverse (-)
126465 .. 127963
1499 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 675 bp
ATGATGATTACACTTACTAGCATTTGGATATTCGTATACGACACCTGTGATGTTGGGTTCGTCTCCCTGAGAGAAGGGGTGGCGGCCAAGTCAATGGGTGTGTTATTATGGCGAAGGGAGATGGTCTGTACAAGAGTTGGGAGAAAAGACAGGGCGGGGCATAGTCGCATAAGAGAAATTTTTTTGAGATTCGATCAGAAGAGAGACAGAGAGATGGAGAAGGCCGTGAGCGTGAACGTGAGAGCGGAGATGGAGAAGCTGAGCCCTGAGCAGTTGAAGGCTGTCAAAGAACAAACCGATATGGAAGTCAATCTTCTCCAGGACTCCCTCAACAACATCCGCACTGCCACCGCCCGCCTCGAGGTCGCCTCCTCCGCCCTCCACGACCTCTCCCTCCGCCCTCAGGGAAAGAAGATGCTCGTCCCCCTTACGGCGTCGCTTTATGTCCCCGGAACCCTCCACGACGCCCACCAAGTCCTGGTCGACGTCGGCACCGGCTACTTCATCGAGAAAACCATGCCTCAGGCCAAAGATTACTGCGACCGTAAGATCAACTTGCTCAAATCTAATTTTGACCAACTTGTCGAGGTTGCTTCTAAGAAGAAAAGCATCGCAGATGAAGCCGGGGCAGTTTTGCAAGCCAAAGTGAAGCAGTTGGCTGCTACAACGTCGTAG

Protein Analysis

225

Amino Acids

25.17

Weight (kDa)

9.22

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin PF02996 102 - 218 4.1e-30 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 581
AatII GACGTC 1 cut(s) 489
AbsI CCTCGAGG 1 cut(s) 359
AccB1I GGYRCC 1 cut(s) 491
AccB7I CCANNNNNTGG 1 cut(s) 478
AccBSI CCGCTC 1 cut(s) 245
AccI GTMKAC 2 cut(s) 36, 483
AciI CCGC 8 cut(s) 83, 155, 245, 340, 351, 355, 375, 397
AcoI YGGCCR 1 cut(s) 84
AcsI RAATTY 1 cut(s) 177
AcyI GRCGYC 3 cut(s) 434, 465, 486
AfaI GTAC 1 cut(s) 130
AfiI CCNNNNNNNGG 4 cut(s) 361, 403, 430, 478
AgsI TTSAA 1 cut(s) 277
AjnI CCWGG 2 cut(s) 318, 477
AluBI AGCT 1 cut(s) 259
AluI AGCT 1 cut(s) 259
Alw26I GTCTC 2 cut(s) 67, 198
Ama87I CYCGRG 1 cut(s) 359
AoxI GGCC 3 cut(s) 84, 222, 525
ApeKI GCWGC 1 cut(s) 659
ApoI RAATTY 1 cut(s) 177
AsuC2I CCSGG 2 cut(s) 450, 625
AvaI CYCGRG 1 cut(s) 359
AxyI CCTNAGG 2 cut(s) 402, 522
BanI GGYRCC 1 cut(s) 491
BanII GRGCYC 1 cut(s) 266
BbvI GCAGC 1 cut(s) 646
BccI CCATC 3 cut(s) 115, 208, 244
BceAI ACGGC 2 cut(s) 209, 447
BciT130I CCWGG 2 cut(s) 320, 479
BcnI CCSGG 2 cut(s) 450, 625
BcoDI GTCTC 2 cut(s) 67, 198
BfaI CTAG 1 cut(s) 18
BisI GCNGC 2 cut(s) 84, 660
BlpI GCTNAGC 1 cut(s) 260
BlsI GCNGC 2 cut(s) 85, 661
Bme1390I CCNGG 4 cut(s) 320, 450, 479, 625
BmeT110I CYCGRG 1 cut(s) 359
BmiI GGNNCC 2 cut(s) 454, 493
BmrFI CCNGG 4 cut(s) 320, 450, 479, 625
BmsI GCATC 2 cut(s) 405, 618
BplI GAGNNNNNCTC 2 cut(s) 353, 385
BpmI CTGGAG 1 cut(s) 302
Bpu10I CCTNAGC 1 cut(s) 267
Bpu1102I GCTNAGC 1 cut(s) 260
BpuMI CCSGG 2 cut(s) 450, 625
BsaHI GRCGYC 3 cut(s) 434, 465, 486
BsaJI CCNNGG 2 cut(s) 448, 624
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 4 cut(s) 361, 403, 430, 478
Bse118I RCCGGY 1 cut(s) 494
Bse21I CCTNAGG 2 cut(s) 402, 522
BseBI CCWGG 2 cut(s) 320, 479
BseDI CCNNGG 2 cut(s) 448, 624
BseGI GGATG 1 cut(s) 336
BseLI CCNNNNNNNGG 4 cut(s) 361, 403, 430, 478
BseMII CTCAG 5 cut(s) 59, 251, 258, 416, 536
BseRI GAGGAG 1 cut(s) 361
BseXI GCAGC 1 cut(s) 646
Bsh1285I CGRYCG 1 cut(s) 544
BshFI GGCC 3 cut(s) 86, 224, 527
BshNI GGYRCC 1 cut(s) 491
BsiEI CGRYCG 1 cut(s) 544
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 3 cut(s) 450, 495, 624
BslFI GGGAC 2 cut(s) 407, 431
BslI CCNNNNNNNGG 4 cut(s) 361, 403, 430, 478
BsmAI GTCTC 2 cut(s) 67, 198
BsmBI CGTCTC 1 cut(s) 67
BsmFI GGGAC 2 cut(s) 407, 431
BsnI GGCC 3 cut(s) 86, 224, 527
BsoBI CYCGRG 1 cut(s) 359
Bsp1286I GDGCHC 1 cut(s) 266
Bsp1407I TGTACA 1 cut(s) 128
Bsp143I GATC 2 cut(s) 193, 549
Bsp1720I GCTNAGC 1 cut(s) 260
BspACI CCGC 8 cut(s) 83, 155, 245, 340, 351, 355, 375, 397
BspANI GGCC 3 cut(s) 86, 224, 527
BspCNI CTCAG 5 cut(s) 60, 252, 259, 415, 535
BspLI GGNNCC 2 cut(s) 454, 493
BspT107I GGYRCC 1 cut(s) 491
BsrBI CCGCTC 1 cut(s) 245
BsrFI RCCGGY 1 cut(s) 494
BsrGI TGTACA 1 cut(s) 128
BssAI RCCGGY 1 cut(s) 494
BssECI CCNNGG 2 cut(s) 448, 624
BssMI GATC 2 cut(s) 193, 549
BssNAI GTATAC 1 cut(s) 37
BssNI GRCGYC 3 cut(s) 434, 465, 486
Bst1107I GTATAC 1 cut(s) 37
Bst2UI CCWGG 2 cut(s) 320, 479
Bst4CI ACNGT 1 cut(s) 545
Bst6I CTCTTC 1 cut(s) 194
BstACI GRCGYC 3 cut(s) 434, 465, 486
BstAUI TGTACA 1 cut(s) 128
BstC8I GCNNGC 2 cut(s) 355, 639
BstDEI CTNAG 6 cut(s) 68, 260, 267, 402, 522, 597
BstF5I GGATG 1 cut(s) 336
BstKTI GATC 2 cut(s) 196, 552
BstMAI GTCTC 2 cut(s) 67, 198
BstMBI GATC 2 cut(s) 193, 549
BstMCI CGRYCG 1 cut(s) 544
BstMWI GCNNNNNNNGC 2 cut(s) 374, 620
BstNI CCWGG 2 cut(s) 320, 479
BstSCI CCNGG 4 cut(s) 318, 448, 477, 623
BstV1I GCAGC 1 cut(s) 646
BstXI CCANNNNNNTGG 1 cut(s) 94
BstZ17I GTATAC 1 cut(s) 37
Bsu36I CCTNAGG 2 cut(s) 402, 522
BsuRI GGCC 3 cut(s) 86, 224, 527
BtgZI GCGATG 1 cut(s) 595
BtsCI GGATG 1 cut(s) 336
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 1 cut(s) 342
Cac8I GCNNGC 2 cut(s) 355, 639
Cfr10I RCCGGY 1 cut(s) 494
CseI GACGC 2 cut(s) 423, 473
Csp6I GTAC 1 cut(s) 129
CviAII CATG 1 cut(s) 517
CviQI GTAC 1 cut(s) 129
DdeI CTNAG 6 cut(s) 68, 260, 267, 402, 522, 597
DpnI GATC 2 cut(s) 195, 551
DpnII GATC 2 cut(s) 193, 549
DrdI GACNNNNNNGTC 1 cut(s) 581
DseDI GACNNNNNNGTC 1 cut(s) 581
EaeI YGGCCR 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
EciI GGCGGA 2 cut(s) 364, 386
Eco24I GRGCYC 1 cut(s) 266
Eco81I CCTNAGG 2 cut(s) 402, 522
Eco88I CYCGRG 1 cut(s) 359
EcoRII CCWGG 2 cut(s) 318, 477
EcoT38I GRGCYC 1 cut(s) 266
Esp3I CGTCTC 1 cut(s) 67
FaeI CATG 1 cut(s) 520
FaiI YATR 7 cut(s) 37, 109, 162, 170, 302, 444, 518
FalI AAGNNNNNCTT 4 cut(s) 297, 329, 539, 571
FaqI GGGAC 2 cut(s) 407, 431
FatI CATG 1 cut(s) 516
FauI CCCGC 2 cut(s) 148, 362
FblI GTMKAC 2 cut(s) 36, 483
Fnu4HI GCNGC 2 cut(s) 84, 660
FokI GGATG 1 cut(s) 323
FriOI GRGCYC 1 cut(s) 266
Fsp4HI GCNGC 2 cut(s) 84, 660
FspBI CTAG 1 cut(s) 18
GluI GCNGC 2 cut(s) 84, 660
GsuI CTGGAG 1 cut(s) 302
HaeIII GGCC 3 cut(s) 86, 224, 527
HapII CCGG 3 cut(s) 450, 495, 624
HgaI GACGC 2 cut(s) 423, 473
Hin1I GRCGYC 3 cut(s) 434, 465, 486
Hin1II CATG 1 cut(s) 520
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HinfI GANTC 2 cut(s) 189, 323
HpaII CCGG 3 cut(s) 450, 495, 624
Hpy166II GTNNAC 3 cut(s) 37, 235, 484
Hpy188I TCNGA 1 cut(s) 198
Hpy188III TCNNGA 1 cut(s) 508
Hpy8I GTNNAC 3 cut(s) 37, 235, 484
Hpy99I CGWCG 5 cut(s) 439, 467, 488, 491, 673
HpyAV CCTTC 4 cut(s) 68, 108, 214, 271
HpyCH4III ACNGT 1 cut(s) 545
HpyCH4IV ACGT 3 cut(s) 237, 486, 668
HpyCH4V TGCA 1 cut(s) 637
HpyF10VI GCNNNNNNNGC 2 cut(s) 374, 620
HpyF3I CTNAG 6 cut(s) 68, 260, 267, 402, 522, 597
HpySE526I ACGT 3 cut(s) 237, 486, 668
Hsp92I GRCGYC 3 cut(s) 434, 465, 486
Hsp92II CATG 1 cut(s) 520
Kzo9I GATC 2 cut(s) 193, 549
Lsp1109I GCAGC 1 cut(s) 646
LweI GCATC 2 cut(s) 405, 618
MaeI CTAG 1 cut(s) 18
MaeII ACGT 3 cut(s) 237, 486, 668
MalI GATC 2 cut(s) 195, 551
MbiI CCGCTC 1 cut(s) 245
MboI GATC 2 cut(s) 193, 549
MboII GAAGA 4 cut(s) 211, 305, 424, 613
MhlI GDGCHC 1 cut(s) 266
MluCI AATT 2 cut(s) 177, 568
MlyI GAGTC 1 cut(s) 317
MspI CCGG 3 cut(s) 450, 495, 624
MspR9I CCNGG 4 cut(s) 320, 450, 479, 625
MvaI CCWGG 2 cut(s) 320, 479
MwoI GCNNNNNNNGC 2 cut(s) 374, 620
NciI CCSGG 2 cut(s) 450, 625
NdeII GATC 2 cut(s) 193, 549
NlaIII CATG 1 cut(s) 520
NlaIV GGNNCC 2 cut(s) 454, 493
PaeR7I CTCGAG 1 cut(s) 359
PfeI GAWTC 1 cut(s) 189
PflMI CCANNNNNTGG 1 cut(s) 478
PfoI TCCNGGA 1 cut(s) 318
PkrI GCNGC 2 cut(s) 85, 661
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
Psp6I CCWGG 2 cut(s) 318, 477
PspGI CCWGG 2 cut(s) 318, 477
PspN4I GGNNCC 2 cut(s) 454, 493
PspXI VCTCGAGB 1 cut(s) 359
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
SalI GTCGAC 1 cut(s) 482
SatI GCNGC 2 cut(s) 84, 660
Sau3AI GATC 2 cut(s) 193, 549
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 4 cut(s) 320, 450, 479, 625
SduI GDGCHC 1 cut(s) 266
SetI ASST 8 cut(s) 47, 240, 261, 366, 390, 489, 591, 671
SfaNI GCATC 2 cut(s) 405, 618
Sfr274I CTCGAG 1 cut(s) 359
SlaI CTCGAG 1 cut(s) 359
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 2 cut(s) 177, 568
SsiI CCGC 8 cut(s) 83, 155, 245, 340, 351, 355, 375, 397
SspMI CTAG 1 cut(s) 18
StyD4I CCNGG 4 cut(s) 318, 448, 477, 623
TaaI ACNGT 1 cut(s) 545
TaiI ACGT 3 cut(s) 240, 489, 671
TaqI TCGA 5 cut(s) 192, 360, 483, 507, 585
TasI AATT 2 cut(s) 177, 568
TatI WGTACW 1 cut(s) 128
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 1 cut(s) 189
TscAI CASTG 1 cut(s) 349
TseI GCWGC 1 cut(s) 659
TspDTI ATGAA 2 cut(s) 493, 633
TspRI CASTG 1 cut(s) 349
Van91I CCANNNNNTGG 1 cut(s) 478
XapI RAATTY 1 cut(s) 177
XhoI CTCGAG 1 cut(s) 359
XmiI GTMKAC 2 cut(s) 36, 483
XspI CTAG 1 cut(s) 18
ZraI GACGTC 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.